Oryzias melastigma (Indian medaka): 112142410
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Entry
112142410 CDS
T07439
Name
(RefSeq) interferon regulatory factor 1 isoform X1
KO
K09444
interferon regulatory factor 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
112142410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112142410
Transcription factors [BR:
oml03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
112142410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF
Motif
Other DBs
NCBI-GeneID:
112142410
NCBI-ProteinID:
XP_024121509
Ensembl:
ENSOMEG00000004091
UniProt:
A0A3B3D2Y9
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All DBs
Position
LG14:complement(22425251..22428290)
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AA seq
293 aa
AA seq
DB search
MPVARMRMRQWLEKMIESESIEGLRWVDKDKKTFSIPWKHAARHGWEMDKDASLFKEWAI
HTGKYVQGQATDPKTWKANFRCAMNSLPDIEEVKDKSINKGHQAMRVFRMLPVSPKCKAK
RSKTEAKHKNKKTSVKMEEDSDYSDTRSPVSTTMQESNFCTQENTIDSTAEVEQTEFPYA
GLSEVPDWSLSVEIGSDPFSMFSHRFEVSPEHSPNYDCSQDIIELCKQLEKDSNGFLNNE
ACTSPGSLWSESSSVDELEDTSLYTPQYTTLGPEFSCQTDNLWKNFYQYPTCL
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtggccaggatgaggatgaggcagtggctggagaagatgatcgagtccgagagc
atcgaagggctgcgctgggtggacaaggataagaaaacattctcaattccttggaaacat
gcagccagacacggttgggagatggataaagatgcatccctgttcaaagagtgggcgatc
cacactggaaagtatgtccagggtcaggctactgatcccaagacttggaaagccaacttt
cggtgtgccatgaactcccttcctgacatcgaggaggtgaaagacaagagcatcaacaaa
ggccaccaagctatgcgagtcttcagaatgctgccagtttctcccaaatgcaaagctaaa
aggagcaaaactgaagcaaagcacaaaaacaagaaaacatctgtcaagatggaggaagac
agcgactacagcgacacacggtctcccgtcagcacaaccatgcaagagtccaacttctgc
acgcaggagaacacaatcgacagcaccgccgaggtcgagcaaacagaatttccttacgcc
ggcttgtctgaagttccagattggtctttgtcagttgagattgggtcggacccgttttca
atgttttcccacagatttgaagtttcccctgaacacagcccaaactacgactgctctcaa
gatattatcgagctttgcaagcaactcgagaaagacagcaatgggttcctgaacaatgaa
gcatgcaccagtccaggaagcctgtggagtgaatcttcctcagtcgacgaactagaagac
acgtcgttgtacacgccccagtacacaacgttgggaccagagttttcatgtcagacggac
aacttgtggaaaaatttttatcagtaccccacctgcctctga
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