Oryzias melastigma (Indian medaka): 112142413
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Entry
112142413 CDS
T07439
Symbol
tbc1d8b
Name
(RefSeq) TBC1 domain family member 8B isoform X1
KO
K19951
TBC1 domain family member 8/9
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112142413 (tbc1d8b)
Membrane trafficking [BR:
oml04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112142413 (tbc1d8b)
Endosome - Golgi transport
Rab GTPases and associated proteins
112142413 (tbc1d8b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
GRAM
RabGap-TBC_2
EF-hand_1
EF-hand_8
EF-hand_6
EF-hand_7
Ric8
EF-hand_5
Motif
Other DBs
NCBI-GeneID:
112142413
NCBI-ProteinID:
XP_024121514
Ensembl:
ENSOMEG00000005561
LinkDB
All DBs
Position
LG14:complement(11464493..11484304)
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AA seq
1139 aa
AA seq
DB search
MWLKPEEILLKNAFKLWVTEKDNEYFVLQRRRGYGEGGGGLTGLLVGTLDTVLDSTSKVA
PYRILHHTPDSQVYWSVACGVTREEIFQHWEWLQQNIMRTLSVFDSSEDITSFVQGKIRG
LIAEEGKTSLVLEDDPEKFREALLRFEKWFELPPEEKLVTYYSCSYWKGKVPCQGWLYLS
TNFLCFYSYLLGAEVKLVISWDEIWRLEKTSNVILTESIHVLAHGEDHYFSMLLHLNETF
SIMEQLADYSIKRLFDKEAFEREPALSDPLQITKRGLEAHAKSQQFRTFFRLPKEENLLE
VHEGFLWVPFSHFNTLGKICLSENYLCFASQDGSQCHVVIPMREVVNVEKPDSGSRALTV
FVRGKKALRFSEVRDYQRLANTIRSRCGISASPQHSASPEAIRGECQSLINHFEDNPEDV
TLMVGQKDSSKAVSTEALMTVFHPQDVENLDPKMLKEKMKEQSWDIHFSEYGRGTSMFFT
RKTRDLIVRGVPESLRGELWMLFSGAVNDMATHPGYYTELVEQSLGTSTLATDEIERDLH
RSLPEHPAFQSDTGISALRRVLTAYAYRNPKIGYCQAMNILTSVLLLYAKEEEAFWLLVA
VCERMLPDYFNRRIIGALVDQAVFEDLIRENLPQLVEHMTDLSFFSSVSLSWFLTLFISV
LPIESAVNVVDCFFFDGIKSILQLGLAVLDYNMEALISCSDDAEAVTILNKFFDSVTNRD
SPLPPTVQQALVGNNSKASHVGVDISELIREAYEKYGSIRSEEVESSRKRNKLYVIQTLE
DTTKQNVIRVVSQDVRFNITQLDELYNLFKRQHFLSCYWTMKSPALLHHDPSLAYLEQYQ
LGFQQFSELFSLLEPWAFCTYKSSLSLWVFRLIDENQDGLINFKEFCCALDTLYSGSFTN
KLKFLFKLHLPPAFTGSPLHSEKQRILHYVPVPEDSSHLTRLSAFDLPEDGVIKKSPERG
RGRIDLQAYLKQWQNEILKKEETIKDLPRINQTQFIQLSKTFYNIFHGHPEEESLYRAIA
HVTSLLLRMEEVGRRLQEPSSPSESEKAAGTSPAEDSSTEQGAVTPESCDSSHNSQDAGS
ELSDTEWSFSFEQVLASLLNEPTIVDFFDRPLNVQTKLGQARAAQLKLKANKGKDSKGN
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgtggctcaaacctgaagagattctgctgaagaacgcgtttaaattatgggtcaccgaa
aaggataacgagtatttcgtgctgcaaaggagacgagggtacggagaaggtggtggcggt
ttgacaggcctccttgtgggaactctggatacggtgttggactccacatccaaagttgct
ccttaccgcattctgcaccacactccagactcacaagtgtactggtcagtagcatgtggt
gtcaccagagaggagattttccagcactgggagtggctgcagcagaatatcatgaggaca
ctgtctgtgtttgactccagtgaagacatcaccagctttgtccagggcaagatacgaggc
cttattgcagaggaaggaaagacctctctggtgctggaagatgatccagaaaaattccga
gaagcacttttgaggtttgaaaagtggtttgaactccccccagaggaaaagctggtcacc
tattactcatgcagctactggaaaggcaaagtaccctgccagggctggctctacctcagc
acaaacttcctctgcttctactcctaccttctgggagctgaggtgaaactcgtcatctcc
tgggacgagatctggaggctggagaaaacctccaacgtcatcctgacggagagcatccat
gttctggctcatggagaggaccactatttctccatgctgctgcatctcaacgaaaccttt
tctattatggaacaactggcggactattccatcaagcgtcttttcgataaagaggcattc
gagagggagccggcactctcagacccactgcagattaccaagagaggccttgaagctcat
gcgaagagtcagcagttccggacgttttttcgtctcccaaaagaggaaaacctgctggag
gttcacgagggcttcttgtgggtgcccttcagccatttcaacactctcggaaagatctgc
ctgtctgagaactacctgtgcttcgccagtcaggatggaagccagtgccatgtcgtcatt
ccaatgagggaggttgtcaacgtggagaagccagactccggcagcagggctttgaccgtc
ttcgtacgtggaaaaaaggcgctgcgtttctccgaggtgcgggactaccaacggctggcg
aacaccatccgcagcaggtgtgggatcagcgccagcccacagcactctgcgtcaccagag
gccatacgaggagagtgtcagtccctcataaatcactttgaggataatccggaggacgtg
actctcatggtgggacagaaagacagcagcaaggctgtgagcaccgaggctctcatgaca
gttttccaccctcaggacgttgaaaaccttgatcctaaaatgcttaaagagaagatgaag
gaacagtcctgggacatccatttctctgaatatggccgtggaaccagcatgttcttcacc
agaaagacccgagatttaattgttcgtggagttccagagtctttgagaggagaattatgg
atgctgttctcaggagctgtgaacgacatggccactcaccccggatattacaccgagctg
gtggagcagtctctgggcaccagcactctggcaacggatgagatcgagagagacctccac
cgctccctacctgaacatcccgccttccagagcgacacgggaatctctgctctgcgcaga
gtcctcactgcctatgcctacaggaaccccaaaatcggatactgtcaggccatgaacatc
ctcacttcagtcctgctgctgtatgcaaaagaagaggaagctttctggctgctggtagcc
gtttgtgagagaatgctcccagattactttaaccgcagaatcatcggtgctttggttgac
caggctgtgtttgaggacctgatcagagaaaacctccctcagctggtggagcacatgacc
gacctcagttttttctcgtccgtgtcgttgtcctggtttctcacgctttttatcagcgtc
ttacccatagagagcgctgtgaatgtggtggactgttttttctttgatggcatcaaatct
atcctgcagctcggtctggctgtgctggattacaacatggaggctctgatcagctgcagt
gacgatgcggaggccgtcaccatcctgaacaagttttttgatagtgtgacaaacagagac
agcccgctgccaccaacagtgcagcaagctttagtgggcaataacagtaaagcatctcac
gtcggtgtggatatcagtgagctgattcgagaggcctacgagaaatatggaagcattcgc
tcagaggaagtcgagagctcacggaaaagaaacaaactgtatgtgatccagacgctggag
gacacaaccaagcagaatgtgatccgagtggtgtcccaagatgtcagattcaacatcaca
cagcttgatgagctttataatctgttcaaaaggcagcatttccttagctgctactggacc
atgaaaagcccggctctgctgcaccatgaccccagcctggcctatctggagcagtaccag
ctgggtttccagcagttcagtgagctcttctctctgctggagccctgggctttttgcacc
tacaagagcagcctctccctctgggtgttccgcctcatagatgagaaccaggacggtctc
atcaacttcaaagagttctgctgtgctctcgacactttatactccggctcgttcacaaac
aagctgaagtttctcttcaagctgcatctgcccccagccttcacaggcagccctttgcac
tcagagaagcaaagaatcctgcactatgttccagtgcctgaagactcttctcacttgact
agactttctgcctttgacctcccagaagacggtgtgattaagaaaagtccggagagaggc
agggggaggattgacctgcaggcctatctgaagcagtggcagaatgaaattcttaaaaag
gaggaaactatcaaggatctccccaggatcaaccagactcagttcatccagctctccaag
accttctacaacattttccatggccatccagaggaagagtctctgtatcgagccatcgcc
catgtgaccagcctcctcctgaggatggaggaggtgggacggaggctgcaggagccaagc
agcccgtcggagtccgaaaaggccgccggcacatcccccgcagaagactcttccaccgag
cagggtgccgtcaccccggagagctgcgacagctcccacaacagccaggacgcagggtct
gagctgtcggacacagagtggtccttctccttcgagcaggtgctggcgtctctgctcaat
gagcccactatagtcgacttcttcgacaggcccctcaacgttcagaccaaactgggacag
gctcgggccgcccagctcaagctgaaggcaaacaagggaaaagattcaaaagggaactaa
DBGET
integrated database retrieval system
