Oryzias melastigma (Indian medaka): 112142457
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Entry
112142457 CDS
T07439
Symbol
zc3h12b
Name
(RefSeq) probable ribonuclease ZC3H12B
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112142457 (zc3h12b)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
112142457 (zc3h12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH_4
UBA_N4BP1_C
Motif
Other DBs
NCBI-GeneID:
112142457
NCBI-ProteinID:
XP_024121631
Ensembl:
ENSOMEG00000005768
LinkDB
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Position
LG14:11257534..11269022
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AA seq
843 aa
AA seq
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MTAWSMVEKLKMEKRPCREENIDSSEAQHATEESEDGSSSESESEDQKPQRAPANSSKRR
EPLAVTKPHRQLCRSPCLDRPSFSQSSTVQDLREDDTSTASGVKPVSEREYQTKIEFALK
LGYSGEQVETVLSKLGAAALINDVLAELVRLGNKVEPETQPCSSAAAPASRPPCVKETVS
PEVSVEEDSVDTFDNLRPIVIDGSNVAMSHGNKEVFSCRGIQLAVEWFRDKGHKDITVFV
PAWRKEQSRPDALITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAYDSDGI
IVSNDNYRDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPVVP
EHKKQPCPYGKKCTYGHKCKYYHPERVNQPLRSVADELRAFAKLSAVKTMSEGALAKCGT
GSATVKGDSSSEAKRVAPKRQSDPSIRSVACEPPEALSIVRKSETNSVPSLVSALSVPTM
QPAKSHAAGALNTRSASSPVPGSLQFSHSSLEHMSSVQYPPILVTNSHGASMTYSEPFPK
YDSVSDHGYYSLHSDFSNMSMSSMHNVDSFCSMEHEHVYQRNPSHCPESCLSHSNSDSFS
SYGDMYPSSMDSSLEESMKGSQQAPAQGRMQAFSHGFRHEALTRVQSYGPEEPKQCSRKQ
SGAHLAPHIQHAAVGARSSCPGDYPLTQNVLPPLSSQPTRSLGMTRMDSVSDSRLYDSNP
MRQRRPPLCREQHASWDPLPCGNESFGYHSYPLSNSLMPCCERVMVRSMPDKMEQIWSSP
WETPSAAEHQEHQVVPDHQYQTYRNLCNIFPAYIVHAVMEKNPHLTDPQQLAAVIVTKLR
SNH
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgacagcatggtccatggtggagaagctcaaaatggaaaaacgcccatgcagggaagag
aacattgactcaagtgaggcccagcatgccactgaggagtcggaggatggaagcagctca
gaaagtgaatccgaagaccagaaaccgcagagggctccggcgaacagcagtaaaagaaga
gaaccgctggctgtcaccaaacctcaccgtcagctctgccgctctccgtgcctcgaccgg
ccgagtttctcccagagtagcactgtccaagacctccgtgaggacgataccagcacggcg
tcaggggttaaacctgtgagtgaaagagagtaccagaccaagattgagtttgcgttgaag
ctgggctattctggagagcaagtggagacggtgctcagtaagctaggagccgcggcactc
attaacgatgttctcgctgaattggtgcgactcggaaacaaagtagagccggaaactcag
ccttgcagcagcgcagccgctccagcgtcacggcccccatgtgtgaaagagactgttagt
ccagaagtttcagtggaagaagattctgtggatacctttgataacctcaggcccatcgtc
attgacggctcaaacgttgcaatgagccatggaaacaaagaggtattctcttgtcgtggt
atccagcttgctgttgaatggtttcgggataaaggacacaaagacatcactgtatttgtt
ccagcctggaggaaggagcagtcaagacctgatgctctaatcacagatcaagaaatctta
cgcaaactggagaaggagaagatcctggttttcaccccatctcgaagagttcagggcagg
agggtggtgtgctatgatgatcgcttcatagtgaagctggcttatgattctgatggaatt
attgtgtcaaacgacaactacagggacctgcaaaacgagaaaccagagtggaaaaagttt
atcgaagagcgtctcttgatgtattcatttgtcaatgacaagtttatgccacctgatgat
ccgctgggaagacatggtccaagcttggaaaattttctccgtaagcgaccggttgttcca
gagcacaaaaaacaaccttgtccctatggaaaaaagtgcacatatggacataagtgtaaa
tactatcatccagaacgtgttaaccaacctttgcggtccgtggcggatgaactccgagcc
tttgccaaattatctgcggtgaaaacgatgagtgaaggagctttagcgaaatgcggcacc
ggttcagcaactgtaaagggggacagcagctctgaagccaaacgcgtggcccccaagcgc
cagtccgatcccagcattcgctcagtggcctgtgaacctccagaggcactctccatcgta
aggaagtccgagacaaattcagtgccttccctcgtgtctgccctcagcgtgcccaccatg
cagcctgccaagagccacgcagccggggccttgaacacacgatcagccagcagccccgtt
cctggttctctgcagttttcccacagttcactggagcacatgtccagcgtgcagtatccc
ccaattttagtcacaaatagtcacggcgcctccatgacttacagtgaaccgttcccaaag
tacgactccgtcagcgatcacggatactactcactccacagtgatttctcaaacatgagc
atgagcagcatgcacaacgtggacagtttctgtagcatggagcacgagcatgtgtaccag
agaaaccccagccactgccccgagtcctgcctaagccattccaacagcgactccttctcc
tcttacggggacatgtaccccagctccatggacagcagtctggaggagagcatgaagggg
tcacagcaggctcctgcacagggaaggatgcaagccttctcccacgggtttcgccacgaa
gcactgactagagttcagagttacggaccggaggagcccaagcagtgctcccggaagcag
tctggagctcacctagcgccacacatccaacacgctgcagtgggagcccggtccagctgt
cccggagactacccacttactcagaacgtcctcccccctttgtcctctcagcccacgcgc
tctctaggtatgactcgaatggacagtgtttctgactcaaggctatatgacagtaaccca
atgaggcagaggcgacctccgctgtgccgcgagcagcacgcaagctgggaccctctgcct
tgcggtaacgagtcctttggatatcactcatatccacttagtaacagcctgatgccgtgc
tgcgagcgtgtgatggttcgcagcatgccagacaagatggaacaaatttggagctcgcca
tgggagaccccatctgcagccgagcaccaggagcatcaggtcgtcccggaccaccagtac
cagacatacaggaacctgtgcaacatctttcctgcttacatcgttcacgccgtcatggag
aaaaacccgcatttgaccgatcctcaacagctggctgcagtcatcgtcactaaactgagg
tccaaccactga
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