Oryzias melastigma (Indian medaka): 112142583 Help Entry 112142583         CDS       T07439                                  Symbol rad50 Name (RefSeq) DNA repair protein RAD50   KO K10866   DNA repair protein RAD50 [EC:3.6.-.-] Organism oml  Oryzias melastigma (Indian medaka) Pathway oml03440   Homologous recombination oml03450   Non-homologous end-joining oml04218   Cellular senescence Brite KEGG Orthology (KO) [BR:oml00001]  09120 Genetic Information Processing   09124 Replication and repair    03440 Homologous recombination     112142583 (rad50)    03450 Non-homologous end-joining     112142583 (rad50)  09140 Cellular Processes   09143 Cell growth and death    04218 Cellular senescence     112142583 (rad50)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:oml03032]     112142583 (rad50)    03400 DNA repair and recombination proteins [BR:oml03400]     112142583 (rad50) DNA replication proteins [BR:oml03032]  Eukaryotic type   DNA Replication Termination Factors    MRN complex     112142583 (rad50) DNA repair and recombination proteins [BR:oml03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     MRN(MRX) complex      112142583 (rad50)     BRCA1-C complex      112142583 (rad50)    NHEJ (non-homologous end-joining)     MRX complex      112142583 (rad50) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_23 Rad50_zn_hook AAA_21 SbcC_Walker_B SMC_N ABC_tran zf-met AAA_29 AAA_16 AAA_13 AAA_22 Motif Other DBs NCBI-GeneID:  112142583 NCBI-ProteinID:  XP_024121815 Ensembl:  ENSOMEG00000005935 LinkDB All DBs Position LG14:20382829..20404981 Genome browser AA seq 1311 aa AA seqDB search MSKIDKMSILGVRSFGIEDKDKQLIAFFSPLTVLVGPNGAGKTTIIECLKYATSGELPPG SKGGAFVHDPRDAHETDVRAQIRLLFTDVTGEKVSVQRSMSCTQKAKNYSFKSLEQVITR MKDGEKVSLSSKCGELDREMISALGVSKPVLNHVIFCHQEESNWPLSEGKALKDKFDSIF AATKYIKALETMRQLRLKQSLTVKECQVELRYLKENKEKAQQIRETVAKKEAQLMASKDS VQQIDGQIDPLESRMNEIDLKLGKVIRLDSDIKLLESRKKQMEQDNKELLETMEQVFQGS DQELQDVYQNHQRTVKDKERRLTDCQKELERAGRECQKLNRVRADLLVEQGRLQLEADRQ MQYIKNRDTQVRSLSSYLEMEGYDRSPFTAVQLESFHRHVTQRLEQEKETFSQVLADLQE KEQQKQKAIDDMRDKKTGLERTVELKRDMQAKKQQELRSIRADLQRLEGSSTRLQELDNE LTKAEHDLQSAVQSSNVEELKTEVEELQREKSELDRTQRQLDQEMQTLNAHTTARTQMEM LKRDKLDKEEQIRKIKSRHNEDLVTLLGHFPNKRELEDWLYSKSKEINSTRDRLAKLNKD LASSEQNKSHTAAELRKKEQQLTSDEEKFFNVCGSQDLEQDLGKLQEDLEKVSKQRAMLA GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQDVIDDMQSKLRLVPDKLKNTEQDLK RKERKRDEMMALRPVRQSIVQVQEKELPELKNRLQTVNREIERLKTDVEKQESLLSRLMS EEDTAKSCLQDISLMDRYMMDLREVERKMAQQAAKLHGVDLNRTIQQVSQEKQETQHKLD TISSKMDLKRNLIQSQQDQIQMLKSEVNERKAEKLQLSSDMQKQQQLEEQCVESTTEIQT LTRDIRESKEQLAPLTAALEKLQQEKQSLMELKKQKQDEGREKVNAIIEKVKAITSLERE INKYVSEGKDQYKEQKESELQETNTQLHEAEKQKERINKEMGNIRQDIDTQKVQERLLQD NLTLRKREEELREVVAKREALLKDIGNMQVTQLRQERRDVERKLEDLKKNRSIALGRQKG FEDEILHYRKELREDQYDKADERYKNKMITMRTTELVINDLNLYYKALDQTIMKFHSMKM DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENASAGVKRRVYNYRVVMVKGDTALDMRGR CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVHIIKSRSRQR NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEIIKCSISSLSELS NT seq 3936 nt NT seq  +upstreamnt  +downstreamnt atgtcgaaaatcgacaaaatgagcatactgggagtgaggagttttgggatagaggataag gacaaacaactcatcgctttcttcagtcctctgactgttttggtaggacccaacggagca ggaaaaacgactattatcgagtgcttgaagtatgcaacatcaggagaacttccccctgga tccaaaggaggtgcatttgttcacgatccaagggatgcccatgagacagatgtacgcgct cagattcgactcctattcacagacgttactggagagaaagtcagcgtccaacgctccatg tcctgcacacagaaagcaaaaaactactcctttaaaagcctagagcaggtcattaccaga atgaaagacggggagaaagtgagcttgtcctcaaagtgtggtgaactggacagagagatg atttctgcactgggggtatcaaagccagtgctgaaccatgtcattttctgccaccaagaa gagtcaaactggccacttagtgagggcaaggcactaaaagacaaatttgactccatcttt gctgcaacaaagtatattaaagctctggaaacgatgcgccagctgcgcctcaagcagagc ttaacggtgaaggagtgtcaggtggagctgcgctacctgaaggagaacaaggagaaggct cagcaaatccgagagactgtggcgaaaaaggaagctcagctgatggcgtctaaagacagc gttcagcagatagatggccagattgacccacttgagagtcgcatgaatgaaattgacctc aagcttgggaaagtgatcagactggatagtgacataaagttgctggagagcagaaaaaaa caaatggaacaggacaacaaggagctgctagaaacaatggagcaggtgtttcagggttca gatcaggagcttcaggatgtttaccagaaccaccagaggactgtgaaggacaaagagcgc aggctgacagactgtcagaaagagctggagagagccggcagagagtgtcagaagctcaat cgggtcagagcggatctcctggtggaacaaggtcgcctacagctggaagccgatcgccaa atgcagtatatcaagaaccgtgacactcaggttcgctctttgtcatcgtatctggagatg gaggggtacgaccgatcccccttcactgctgtgcagctcgagagttttcaccgacatgta actcagagactggagcaggagaaagagacgttcagtcaagttctggcggatttgcaggaa aaagagcaacaaaagcagaaggccatcgatgacatgagggacaagaagactggcctggag agaaccgtggagttgaagagagacatgcaggccaagaagcaacaggaactgaggagcatc agggcagacctgcagagactcgagggttcgtccacgcggctgcaggagctggataatgag ttaacgaaagcggagcacgatctgcagagtgcagttcagagctccaatgtggaggagctg aagacggaggtcgaggaactccagagggagaagagtgagctggatcgcacacagaggcag ctcgaccaggagatgcagactctaaacgcgcacacaactgctcgcacacagatggagatg ttaaaaagagacaagttggacaaagaggagcaaatacggaaaatcaaatctcgtcacaat gaggatctcgtaacgcttctgggtcactttcccaacaagagagagctggaggactggctc tattccaagtcaaaggagatcaacagcaccagagacagactggcaaaactcaacaaggat ttagcatctagtgagcagaacaaaagccatactgctgcagagctgcgtaagaaggagcag cagttaaccagcgacgaggagaagttctttaatgtgtgtgggagccaggatctggagcag gacctgggaaaactgcaggaagatcttgagaaagtttctaagcagagagccatgttagcc ggagcaactgcagtctacacccaattcatcagtcagttgacagaggagagggagccctgc tgccccgtctgccagcgaacctttccctccgagtccgatctccaggacgtcatcgacgac atgcagtctaagcttcgcttggtgccggacaaactgaaaaacacagagcaggacctgaag agaaaggaaagaaagagagatgagatgatggccctcaggcctgtacggcagtctattgta caagtgcaggaaaaggagcttcctgaattaaaaaaccgcctgcagactgtgaacagagaa atcgagaggctcaagacagacgtggagaaacaggagagtcttctgagtagattgatgtct gaggaggatacggccaagtcctgccttcaggacatttctctgatggacagatacatgatg gatcttagagaagtagagagaaaaatggctcagcaagcagccaaactccatggggtggac ctgaacagaaccatccagcaagtcagtcaggagaaacaggagactcaacacaagcttgac accatttccagcaaaatggatctgaagcgtaacctcatccagagtcaacaggaccagatt cagatgctgaaaagtgaagtaaatgagaggaaggcagagaagctccagctgagtagtgac atgcagaaacagcagcagctggaggagcagtgtgtggagtccaccactgagatacagact ctaaccagggatatcagggagtcaaaggagcagttagctcctctgactgcagctttggag aaactgcagcaggaaaagcaatctttgatggaactcaaaaagcagaagcaagatgaagga cgcgagaaggtcaatgctattattgagaaagtaaaggcgatcacctctttggaacgagaa atcaataagtacgtcagcgaaggaaaggatcaatacaaagaacaaaaagagtctgagctc caagaaacaaacactcaacttcacgaggcggagaagcagaaagagagaatcaacaaggaa atggggaacattcgccaagacattgatactcaaaaggtccaagagcgtctgctgcaggac aatctgactctcaggaagcgtgaagaggagctgcgggaggttgtggcaaaacgtgaggct cttctgaaagacatcggcaacatgcaagtcacccaactgcgccaagaacgtcgggatgtg gaacgcaaactagaggatttaaagaagaaccgcagcattgcactgggccgccagaaaggc tttgaagatgagatacttcattacagaaaagagctgcgtgaagaccagtacgacaaagca gatgagcgatacaagaataagatgatcactatgaggaccacagagctggtgatcaatgac ctgaacctttactacaaagccctggatcaaaccatcatgaaattccatagcatgaagatg gatgagattaataagataataagagacctgtggcgcagcacatacaggggccaagatatt gagtatgtggagatcagatctgatgtggatgaaaacgcttctgccggagtgaagagaaga gtctacaactacagagtggtgatggtgaaaggagacaccgctctggacatgagaggacgc tgcagtgctggacagaaggttttagcctcgctgatcatccgcctcgctctggcagagacg ttctgcctaaactgtgggatcttggctctggatgagcccaccaccaacctggacagagaa aacatcgagtctctggcacatgcacttgtgcacatcatcaagagtcgttcgcgtcagcgt aacttccagctgcttatcatcactcacgatgaggactttgtggagctgctgggacggtcc agctacatcgaacatttctaccgcatccgcaagaaccaggaccagaactctgaaatcatc aagtgcagcatttcttcactgagtgaactgtcatga

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