KEGG   Oryzias melastigma (Indian medaka): 112142674
Entry
112142674         CDS       T07439                                 
Symbol
cul5b
Name
(RefSeq) cullin-5
  KO
K10612  cullin 5
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:oml00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    112142674 (cul5b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:oml04121]
    112142674 (cul5b)
   03400 DNA repair and recombination proteins [BR:oml03400]
    112142674 (cul5b)
Ubiquitin system [BR:oml04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul5 complex
    Cullin
     112142674 (cul5b)
DNA repair and recombination proteins [BR:oml03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     112142674 (cul5b)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 HMD
Other DBs
NCBI-GeneID: 112142674
NCBI-ProteinID: XP_024121963
Ensembl: ENSOMEG00000002107
LinkDB
Position
LG14:complement(26746835..26763537)
AA seq 780 aa
MATPHLLKNKGSLQFEDKWDLMRPIVLKLLRQECVTKQQWFDLFSDVHSVCLWDDKGPAK
IHQALKEDILDFIKQAQARVLSHQDDTALLKAYIAEWRKFFTQCDILPKPFCQLEITLMG
KQGSNKKSSVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGV
RESYVNLCSNPEDKLQIYRDNFEKAYMDSTERFYRTQAPSYLHQNGVQNYMKYAESKLRE
EEKRALRYLETRRECNSVQGLMECCVNALVTSFKETILAECPGMIKRNETEKLHLMFSLM
DKVPSGIEPMLKDLEEHIMSAGLADMVASAETITSDSEKYVEQLLTLFNRFSRLVKEAFQ
DDPRFLTARDKAYKAVVNDATIFKLELPMKQKGAGLKTQPESKCPELLANYCDMLLRKTP
LSKKLTSDEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL
REVGMPADYVNKLARMFQDIKVSEDLNQSFKEMHKHKKLALPADSVNIKILNAGAWSRSS
EKVFVSLPTELEDLIPEVEDFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQL
AVLFAWNQRPRERISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLQYEPTVSSPKDF
AEGTLFYVNQEFSLIKNSKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAII
QIMKMRKRINNAQLQTELVEILKNMFLPQKKMIKEQIEWLIDHKYIKRDETDLNTFIYMA
NT seq 2343 nt   +upstreamnt  +downstreamnt
atggcgacgcctcatctgctgaagaacaaaggctccctgcagtttgaggataaatgggat
ctgatgcgtcccatcgtcctgaagctcctgaggcaagagtgcgtcacaaaacagcagtgg
tttgacctgttctcagacgttcattcagtttgtctgtgggacgacaaaggtccggctaag
atccaccaggccctcaaagaggacatcctagatttcatcaaacaagcacaagcacgggtg
ctgagccaccaggatgacacggcgttgctgaaggcctacattgcagagtggaggaagttc
ttcacgcagtgcgacatcctgcccaaacccttctgccagctggagatcactctgatgggg
aagcagggcagcaacaagaagtccagcgtggaagacagcatcgtgcggaagctcatgctg
gacacctggaacgagtccatcttctccaacattaaaaacagacttcaagacagcgccatg
aagctggtccacgccgagaggctgggagaggccttcgactcccagctggtgatcggagtt
cgggagtcctacgtaaacctgtgctccaaccctgaagacaagctgcagatctacagagac
aactttgagaaggcatacatggactccaccgagaggttctacagaactcaggcaccgtcc
tacctccaccagaacggcgtccagaactacatgaaatatgcagagtcgaagctgagggag
gaggagaaacgcgctctgcgatacctggagaccagacgggaatgcaactccgtgcaagga
ttgatggagtgttgcgtcaacgcgctcgtaacgtcattcaaggaaaccatcttagccgaa
tgtccgggaatgatcaaaagaaacgagacggagaagcttcatctgatgttctcgctgatg
gacaaagtgccgagcggcatcgagcccatgctgaaggacctggaggagcacatcatgagc
gcaggcctggcggacatggttgcttctgcagaaaccatcacctctgactcagagaaatac
gtggagcagctgctgacgttgttcaaccgcttcagtcggttggttaaagaggcgttccag
gacgacccgcgcttcttaaccgccagagataaagcttacaaagcggtcgtcaacgatgcc
accatcttcaaactagagcttccaatgaagcagaaaggggcgggcctgaagactcagccc
gagtccaagtgtccagagctgctggccaactactgcgacatgctgctgaggaagactccg
ctcagcaagaagctcacctccgacgagatcgaggccaagctcaaggaagtgcttttagtg
ctgaagtacgtccagaacaaagacgtcttcatgcgctaccacaaagctcatctgacccgc
cggctcatcctggacatctctgccgacagcgagatcgaggagaacatggtggagtggctc
agggaagtgggaatgccagctgattacgttaacaagctggcgcggatgtttcaggacatc
aaggtgtcggaggatctcaaccagtcctttaaagaaatgcacaaacacaaaaagctggcg
ttaccggccgactctgtcaacatcaaaatcctgaacgcgggggcgtggtcgaggagcagc
gagaaggtcttcgtttctctgcccacggagctggaggacctgatcccggaggtggaggac
ttctacaagaagaaccacagcggcaggaagcttcactggcatcacctcatgtccaacggc
attatcacgttcaagaatgaagtgggtcagtatgacctggaggtgaccacgttccagctg
gccgtgctgttcgcctggaaccagcggcccagagagcggatcagcttcgagaacctcaag
ctggctaccgagcttcccgacgcagagctgcggcggactctctggtctctggtggcgttc
cccaaactgaagcggcaggtgttgcagtacgagccgacggtgtcctcgcctaaagacttt
gcagagggaacgctgttctacgtcaaccaggagttctcgctcataaagaactcgaaggtt
cagaaaagggggaagatcaacctgattggtcggctgcagctcaccaccgagcgaatgagg
gaagaggagaacgagggcatcgtccagctgaggatcctgagaacgcaggaggccatcatc
cagataatgaagatgaggaagcgcatcaacaacgcccagctgcagacggagctggtggag
atcctgaagaacatgtttttaccgcagaagaagatgatcaaagagcagattgagtggctg
atagatcacaagtacatcaagcgggacgagacggacctaaacaccttcatctacatggcg
tag

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