Oryzias melastigma (Indian medaka): 112142735
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Entry
112142735 CDS
T07439
Symbol
taf6
Name
(RefSeq) transcription initiation factor TFIID subunit 6
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112142735 (taf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112142735 (taf6)
03036 Chromosome and associated proteins [BR:
oml03036
]
112142735 (taf6)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112142735 (taf6)
Coactivators
SAGA/TFTC/STAGA complex
112142735 (taf6)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
112142735 (taf6)
STAGA complex
112142735 (taf6)
TFTC complex
112142735 (taf6)
SAGA complex
112142735 (taf6)
SLIK complex
112142735 (taf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CENP-S
CBFD_NFYB_HMF
Bromo_TP
Motif
Other DBs
NCBI-GeneID:
112142735
NCBI-ProteinID:
XP_024122049
Ensembl:
ENSOMEG00000002627
UniProt:
A0A3B3CYW0
LinkDB
All DBs
Position
LG14:complement(12541068..12546857)
Genome browser
AA seq
638 aa
AA seq
DB search
MAEERRQKQCSVTLPTESMKAMAESVGVGQLQEESCVALSEEVSYRIKEIAQDALKFMHH
GKRRKLTTSDIDNALKLKNVEPLYGFQSQEFIPFRFASGGGRELHFYEEKEVDLSDIINT
PLPRVPLDVSLKAHWLSIEGVQPSIPENPPPATKEQQKTESTEPLKVVKPGQEEEGAIQG
KGQGATAPDGKGKEKGLIRLKPRSTHELSVEQQLYYKEITEACVGSCEAKRAEALQSIAT
DPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYLHELIPAV
VTCIVSKQLCLRPDVDNHWALRDFAARLMAQCCKTFSTTTNNIQSRITKTLTKSWLDEKT
QWTARYGCIAGLAELGPDVIKTLILPRLAVEGSRIKAVMEGSVISNIDKIGAEHVQSLLL
KHCASVIAKIRPQPDTVEQYRTDYGYLGPMLCSHVIKARTQAALQAQQVNRTTLTITQPR
PTLSVSQSGLSGSGGPRTPSIIKVPSSLTLMSPRPGTPSQPSPPATKYIVMGTSAGTAST
QQVITLSSSQSASPVTSTVPSGTSTLQPLVKVESGGGPGLTASRPMQKYIVVSLPPSASS
SLEPKSTVLSTSVSSTPLDTGIKLERSESPGVSTQSPH
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggagcgtcggcagaagcagtgctcggtcacccttcccaccgagtccatgaag
gccatggcagagtcggtaggggttgggcagttacaggaggaaagctgcgtcgctctgagt
gaggaggtcagctacagaattaaagaaatcgcacaggatgctttgaaattcatgcatcat
gggaaaaggcgtaaattaactaccagtgatatagataatgctctcaagctgaaaaatgtg
gagcccctgtatggattccagtctcaggagtttatcccttttcgctttgcaagtggtgga
ggaagagagctccacttctatgaagaaaaggaggtcgacctcagtgacattattaacaca
cctcttccccgagttccactagatgtctctctcaaagcccactggttaagtattgaaggg
gttcagccctcaattcctgaaaatccacctccagcaacaaaagaacaacaaaagacagaa
tccacggagcctcttaaagtggtcaaaccaggtcaggaagaggaaggggcgattcaaggc
aaaggtcagggtgcaacagctccagacggcaaaggaaaagagaaaggtttgatcaggttg
aaacctcgcagcactcatgagctgtctgtagagcagcagctgtactacaaggagatcaca
gaagcctgtgttggctcctgcgaggcaaagcgagcagaagctttgcagagtatagccact
gatccaggactgtatcagatgcttccaagattcagcacatttatatctgaaggggtccgt
gtcaatgtggtgcagaataatttggcgcttctgatatatctcatgcggatggtcaaagct
ctaatggacaacccaactctgtatttggaaaaatatctccatgagctcatccccgccgtg
gtcacctgtattgtgagtaagcagctctgtttgcggccggatgttgacaaccactgggct
ttacgggactttgcggctcggcttatggcccagtgctgcaaaaccttcagtactacgacc
aacaacatccagtctcggattaccaaaactttaaccaagagttggctggatgagaaaacc
cagtggacagcacgatacggctgcattgcagggttggctgaattgggtcccgatgtgata
aagacactcatccttcctcgtcttgctgtagagggttctcgcatcaaagcggtgatggaa
ggatctgtgatctctaatattgataagataggggcggaacacgttcagagcctcctactg
aaacactgtgccagtgtaatcgcaaagatccgccctcagccggacacagtagagcagtat
cgcacagactatggttaccttggacccatgctgtgctctcatgtaattaaagccagaact
caagcagcactgcaggctcagcaagtcaacagaaccacattaacaatcacacagcctcgc
cccactctttcagtctcacaaagtgggttgagtgggtcggggggtcctcgcactcccagt
atcataaaggttcccagctccctcacactcatgtccccaagacccggtactccatcacaa
ccatctcccccagcaacaaagtacattgtaatgggaactagtgcaggaactgcctccact
cagcaggtaatcactcttagctcttcccagtcagcttcccctgtaaccagcacagttccc
agtggaacctcaaccttgcagcctttggtcaaagtggagtctggcggtggtcctggactg
acggcttcccgtcctatgcagaagtacatagttgtgtctctgcccccgtctgcctcttcc
tctttggagcctaaaagtacggtgttatccacctcagtttcctcaactcctttggataca
ggaataaagctggagcgctccgagtcccccggagtgagcacgcagtcaccgcattga
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