Oryzias melastigma (Indian medaka): 112142871
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Entry
112142871 CDS
T07439
Name
(RefSeq) HMG box transcription factor BBX isoform X1
KO
K21643
HMG box transcription factor BBX
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112142871
Transcription factors [BR:
oml03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112142871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF2028
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
112142871
NCBI-ProteinID:
XP_024122262
Ensembl:
ENSOMEG00000018646
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All DBs
Position
LG14:complement(18650747..18680747)
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AA seq
797 aa
AA seq
DB search
MKSGGRSKEPPVAGEITGKRPKRKCLQWHPLLSKKTLDFSEEEEEDDEEELEKQPGLCSP
DQDSQVQSGSTTEEVEEDSSEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILAD
WWAVLEPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTSKPVKSPSYQTVGNPRKKVWSFS
CTSPKDSTAKKVPKTNSLPQLNFAMADPTKMGGLSMLLLAGEHALTNREIPSKPSLPVIA
NEGDSFPEEKEEISSQTIPNRVPDITESRVKPALSPVAESSLSVAPEGKPCKQSALFQLA
EMCLASEAGKMDAVASSPEDSSSTASLHQTAIKPDVKEEGPDPDHYPHAHTSPLCPPSPT
STSTDATSPQQSRHASRVKKKNKKKEAAESRNTETPSSAKQITKKCEHSEENMDSIFSTI
EAVASGAWVPTDDKTKKRVQTSLGNSPKKKCKTKAKVFVKEKEEEMDESSGQCGSSDGDV
KEGMTDMTPNTEAEEDAAEGADVQDCMPEPRVSQCIVSPAKVPEEDRGKDSHGDPAFELN
TENRGSRKSERSCKGALYKTLVSEGMLTSLRANIDRGKKGAFRAFDDANWSHESWTISNI
GPNNPKKLKKSKSKDESQSLGKLEEEFEKKFNSLPQFSPVTFDKKGTAVAKKRKSDGSTN
QEDTPKAGKDVQAASSMEMLVGSQKRKARKTKITHLVRTADGSVSAAEEDKTKDLNQEQD
KKPLPQQNLCNEKRCYSPGAEEADRSTVPQELPTFFSLAALAEVAAMENVHRGQRGLAQS
QKKELAQTPVLISCADQ
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgaagagtggaggaaggagcaaggagccacctgtcgctggggagatcaccggcaaacgc
cccaaacgcaaatgtctgcagtggcacccccttctgtccaagaagactctggatttctca
gaggaagaggaagaggatgatgaagaggaactggagaagcagccagggctgtgcagtccc
gaccaggactcccaggtgcagagtggaagcacaacagaggaggttgaggaggactccagt
gagcagcgggcacgtcggccaatgaatgccttcctcctgttttgtaagcgccaccggtcc
ttggtgcggcaggaacatccccgcctggacaaccgaggggccaccaaaatcctggccgac
tggtgggctgtgctggagcccaaagagaagcagaaatacactgacatggccaaggagtac
aaggatgctttcatgaaggcaaacccaggctacaagtggtgtccgaccaccagcaaaccg
gtcaaaagcccctcctatcagacggtcggaaacccccgcaaaaaggtttggtccttttcc
tgcacctcacccaaggactccactgccaaaaaagtgccgaaaaccaacagcttgccgcag
ttgaactttgccatggcagatcctacaaagatgggaggccttagcatgctgctgttagct
ggagaacacgccctcactaacagagagatcccttctaaacctagtttacctgtcatagcc
aatgaaggagactcttttccagaagagaaagaagagatttcgtctcagactataccaaac
agagtgcctgacattactgaaagcagggtcaagccggccctttccccagtggcagagtct
tccctgtctgtggctcctgaaggaaaaccatgcaaacagtcggcgctttttcagctcgca
gagatgtgtttagcgtctgaggctggaaaaatggacgccgttgcatcctcgccagaggac
agctcctccacagcctctctgcaccaaactgctatcaagcctgatgtgaaagaggaggga
cccgaccctgaccactacccccacgcgcacacatcgcccctctgccctccctcccccact
tctacctcgactgacgccacgtcccctcaacagagcaggcatgcttcacgagtcaaaaag
aagaataagaagaaagaggcggccgagtcaaggaacactgaaacgccgtcttcggcgaag
caaatcaccaagaaatgcgagcactcggaggagaacatggacagcatcttcagtaccatc
gaggcggtggccagcggggcctgggttcccacagacgacaagaccaagaagagagtccag
accagtttggggaactcgccgaaaaaaaaatgtaagaccaaagcgaaggtgtttgtcaaa
gagaaagaagaggagatggacgagagcagcgggcaatgcgggtcttctgacggcgacgtg
aaggaagggatgacggacatgacccccaacacggaagcagaggaagatgctgcagaggga
gcggacgtccaggactgcatgccggagcctcgcgtctcccagtgcatcgtgtcacctgct
aaagtcccagaggaagacaggggaaaggacagccacggcgacccggcctttgagctgaac
actgagaaccgtggctccaggaaatcagagcggagctgcaagggcgctttgtataaaacg
ctggtgtctgagggaatgctgacgtcactaagagcaaatattgatcgagggaaaaagggt
gctttccgcgcttttgatgatgctaactggagtcacgagagctggaccatttcaaacata
ggacctaataatcccaagaaactcaagaagtccaagtccaaagatgagtcacagagcctt
gggaaactggaggaggagtttgaaaagaagttcaacagcctcccgcagtttagcccggtg
acctttgataagaaggggacagcagtcgcaaagaaaagaaagagtgacggctcgaccaat
caggaggacacccccaaagcaggaaaagatgtccaggctgcctctagcatggagatgctg
gtcggcagccagaagaggaaggctaggaagaccaagatcacacacttggtgcgcacagct
gatggcagcgtgtctgcagcagaagaggacaaaacgaaggacctgaaccaggaacaggat
aagaagccattaccccaacagaatttatgcaatgaaaaacggtgctacagtcccggagcg
gaggaggccgacaggagcaccgtaccacaggagctacccaccttcttcagcttggcggcg
cttgctgaggtagcagccatggagaacgttcacagaggccagaggggcctggctcagagt
cagaagaaggagctggcccagactccggtcctcatctcctgcgctgatcagtga
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