Oryzias melastigma (Indian medaka): 112142932
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Entry
112142932 CDS
T07439
Symbol
pafah1b1b
Name
(RefSeq) lissencephaly-1 homolog B
KO
K16794
platelet-activating factor acetylhydrolase IB subunit alpha
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml00565
Ether lipid metabolism
oml01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09100 Metabolism
09103 Lipid metabolism
00565 Ether lipid metabolism
112142932 (pafah1b1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oml03036
]
112142932 (pafah1b1b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oml04147
]
112142932 (pafah1b1b)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
112142932 (pafah1b1b)
Exosome [BR:
oml04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112142932 (pafah1b1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_EML_2
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_Nup120_160
LisH
WD40_RFWD3
Beta-prop_RIG_2nd
LisH_PAC1
Beta-prop_IFT140_1st
Beta-prop_SPT8
eIF2A
Beta-prop_DCAF12
Beta-prop_RIG_1st
Beta-prop_WDR35_TULP_N
Beta-prop_NUP159_NUP214
Pox_A_type_inc
Beta-prop_WDR11_2nd
ARMC9_LisH
SutA-RBD
LisH_2
LisH_WDR26
Motif
Other DBs
NCBI-GeneID:
112142932
NCBI-ProteinID:
XP_024122382
Ensembl:
ENSOMEG00000008959
LinkDB
All DBs
Position
LG14:complement(19145887..19156036)
Genome browser
AA seq
410 aa
AA seq
DB search
MVLSQRQRDELNRAIADYLRSNGYEEAYSTFKKEAELDMNEDVDKKYAGLLEKKWTSVIR
LQKKVMELESKLNEAKEEMTHGGPVGQKRDPKEWIPRPPERYAMSGHRAPVTRVIFHPVF
SVMVTASEDATIKVWDYEAGDFERTLKGHTDSVQDVSFDQTGKLLASCSADMSIKLWDFQ
GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMV
RPNQDGSLIASCSNDQTVRVWVVASKECKAELREHEHVVECIAWAPDSAHPTILEATGSE
SKKSGKPGPFLLSGSRDKTIKMWDVSIGICLMTLVGHDNWVRGVLFHPGGRFIVSCADDK
TIRIWDFKNKRCMKTLSAHEHFVTSLDFHKSAPYVVTGSVDQTVKVWECR
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggtgctgtcccagagacaaagagatgaactcaatcgagctatagctgattatcttcgt
tccaatggatatgaggaagcgtattctaccttcaagaaagaagcagaattagacatgaat
gaagatgtagataagaagtatgcaggactcttggaaaaaaaatggacctcggttatcaga
ttacaaaagaaggtgatggagttggagtcgaagctaaatgaggcaaaggaagagatgaca
cacggcggtccagtgggtcaaaagagagaccctaaggagtggattccacgtccgccggag
agatacgccatgagcgggcaccgtgctcctgtcacgcgtgtcatattccacccggtgttt
tctgttatggtcacagcctccgaggatgccactattaaggtttgggactacgaggcagga
gactttgagcgaaccctcaaaggccacacagactctgtgcaggatgtctccttcgatcag
acgggaaagctgctggcttcatgttcagctgatatgagcatcaaactctgggactttcaa
gggttcgagtgtatcagaacaatgcatggccacgatcacaatgtgtcgtctgtagccatt
atgccaaatggggatcacatagtgtctgcctccagagacaaaactattaagatgtgggaa
gtagctaccggctactgtgtgaagactttcacgggccacagggagtgggtgagaatggtc
cgtcccaatcaggacggctccctgattgccagctgctccaacgaccagacagtgcgcgtc
tgggtcgtcgcctcgaaagagtgcaaagccgagttacgggagcacgagcatgtggtagaa
tgtatcgcctgggcccctgacagcgctcaccccaccatcctggaagccacaggctcagag
agcaagaagagtgggaaacctggtccattccttctctctggctccagagataaaacaatt
aagatgtgggatgtgagcatcgggatctgccttatgactttggtgggacatgacaactgg
gtgcgcggggtgctgtttcaccctggaggacgattcatagtgagctgtgccgatgacaaa
accattaggatctgggacttcaagaacaaacgctgcatgaagaccttgagtgctcatgaa
cactttgttacctctttggatttccacaagtctgccccctacgtggtcacaggcagcgtc
gaccagacagtcaaagtctgggagtgccgctga
DBGET
integrated database retrieval system