KEGG   Oryzias melastigma (Indian medaka): 112142932
Entry
112142932         CDS       T07439                                 
Symbol
pafah1b1b
Name
(RefSeq) lissencephaly-1 homolog B
  KO
K16794  platelet-activating factor acetylhydrolase IB subunit alpha
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml00565  Ether lipid metabolism
oml01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:oml00001]
 09100 Metabolism
  09103 Lipid metabolism
   00565 Ether lipid metabolism
    112142932 (pafah1b1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:oml03036]
    112142932 (pafah1b1b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oml04147]
    112142932 (pafah1b1b)
Chromosome and associated proteins [BR:oml03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    112142932 (pafah1b1b)
Exosome [BR:oml04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   112142932 (pafah1b1b)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I WDR55 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_EML_2 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_EML WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_Nup120_160 LisH WD40_RFWD3 Beta-prop_RIG_2nd LisH_PAC1 Beta-prop_IFT140_1st Beta-prop_SPT8 eIF2A Beta-prop_DCAF12 Beta-prop_RIG_1st Beta-prop_WDR35_TULP_N Beta-prop_NUP159_NUP214 Pox_A_type_inc Beta-prop_WDR11_2nd ARMC9_LisH SutA-RBD LisH_2 LisH_WDR26
Other DBs
NCBI-GeneID: 112142932
NCBI-ProteinID: XP_024122382
Ensembl: ENSOMEG00000008959
LinkDB
Position
LG14:complement(19145887..19156036)
AA seq 410 aa
MVLSQRQRDELNRAIADYLRSNGYEEAYSTFKKEAELDMNEDVDKKYAGLLEKKWTSVIR
LQKKVMELESKLNEAKEEMTHGGPVGQKRDPKEWIPRPPERYAMSGHRAPVTRVIFHPVF
SVMVTASEDATIKVWDYEAGDFERTLKGHTDSVQDVSFDQTGKLLASCSADMSIKLWDFQ
GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMV
RPNQDGSLIASCSNDQTVRVWVVASKECKAELREHEHVVECIAWAPDSAHPTILEATGSE
SKKSGKPGPFLLSGSRDKTIKMWDVSIGICLMTLVGHDNWVRGVLFHPGGRFIVSCADDK
TIRIWDFKNKRCMKTLSAHEHFVTSLDFHKSAPYVVTGSVDQTVKVWECR
NT seq 1233 nt   +upstreamnt  +downstreamnt
atggtgctgtcccagagacaaagagatgaactcaatcgagctatagctgattatcttcgt
tccaatggatatgaggaagcgtattctaccttcaagaaagaagcagaattagacatgaat
gaagatgtagataagaagtatgcaggactcttggaaaaaaaatggacctcggttatcaga
ttacaaaagaaggtgatggagttggagtcgaagctaaatgaggcaaaggaagagatgaca
cacggcggtccagtgggtcaaaagagagaccctaaggagtggattccacgtccgccggag
agatacgccatgagcgggcaccgtgctcctgtcacgcgtgtcatattccacccggtgttt
tctgttatggtcacagcctccgaggatgccactattaaggtttgggactacgaggcagga
gactttgagcgaaccctcaaaggccacacagactctgtgcaggatgtctccttcgatcag
acgggaaagctgctggcttcatgttcagctgatatgagcatcaaactctgggactttcaa
gggttcgagtgtatcagaacaatgcatggccacgatcacaatgtgtcgtctgtagccatt
atgccaaatggggatcacatagtgtctgcctccagagacaaaactattaagatgtgggaa
gtagctaccggctactgtgtgaagactttcacgggccacagggagtgggtgagaatggtc
cgtcccaatcaggacggctccctgattgccagctgctccaacgaccagacagtgcgcgtc
tgggtcgtcgcctcgaaagagtgcaaagccgagttacgggagcacgagcatgtggtagaa
tgtatcgcctgggcccctgacagcgctcaccccaccatcctggaagccacaggctcagag
agcaagaagagtgggaaacctggtccattccttctctctggctccagagataaaacaatt
aagatgtgggatgtgagcatcgggatctgccttatgactttggtgggacatgacaactgg
gtgcgcggggtgctgtttcaccctggaggacgattcatagtgagctgtgccgatgacaaa
accattaggatctgggacttcaagaacaaacgctgcatgaagaccttgagtgctcatgaa
cactttgttacctctttggatttccacaagtctgccccctacgtggtcacaggcagcgtc
gaccagacagtcaaagtctgggagtgccgctga

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