KEGG   Oryzias melastigma (Indian medaka): 112143005
Entry
112143005         CDS       T07439                                 
Symbol
pnn
Name
(RefSeq) pinin
  KO
K13114  pinin
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml03013  Nucleocytoplasmic transport
oml03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:oml00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    112143005 (pnn)
   03015 mRNA surveillance pathway
    112143005 (pnn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oml03019]
    112143005 (pnn)
   03041 Spliceosome [BR:oml03041]
    112143005 (pnn)
Messenger RNA biogenesis [BR:oml03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     112143005 (pnn)
Spliceosome [BR:oml03041]
 Complex C
  Other components
   EJC/TREX
    112143005 (pnn)
SSDB
Motif
Pfam: Pinin_SDK_N Pinin_SDK_memA Toxin_trans
Other DBs
NCBI-GeneID: 112143005
NCBI-ProteinID: XP_024122530
Ensembl: ENSOMEG00000011591
UniProt: A0A3B3BY62
LinkDB
Position
LG22:20029999..20036160
AA seq 653 aa
MAVAVRSLQDQLEKAKESLKNVDDNIRKLTGRDPNESRPGQFRRLSGPMAGLGGGRGRGI
NLLRRSLSDMGTGGPPAKQRDIEGALLRLAGDQRARRDMRHDSDAEDDEDVKKPALQSSV
VATSKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESNVSSEKQKRRSEIEQK
LEVQAEAEKKKVENERRELFEERRAKQTELRLLEQKVELAQLQEEWTSHNNNLLKFIRTK
AKPHIFYLPGKMCSASQKLLEESTKKLNAVFEERREAFAEQLNKMESRPRRQINRDQDSN
AASRTDHPAEGKPAGQAAKLTGKRSIAEMEEEDEDEEDEEGEKEGDRSVTEGDDGEGRKE
ELEKVEEEEGMEFREEGSEKKEAEEQREKEGKKESPKSEEMEVEMEAEKEEVKEVNIDDS
QGVVDLQEKPLETPKPSESSQEAAADSSDQPQPSLTVEGPPEQPPPTESASPAQEPQTTS
TVDVQDSANQNPAEEPKSTEEAPPKLPDSQEAPASSPKKDDGGDRGRKKEKAKRRRSKSS
SSSSSGSSSDSSSSGSSSSSSGSSRSSSSSSSSSSSNSSSRSRDGGKRKRRTSEKGTDKK
KKEERRSNKGGGSSGGRDSKESKEKKRRNEEGRGRSSRGDREHKDRDRKDKRR
NT seq 1962 nt   +upstreamnt  +downstreamnt
atggcggtggctgtgcggagtttgcaggatcagctcgaaaaagccaaagaaagcttgaaa
aatgtggacgataatattcgaaaacttacgggccgagatccaaatgaatcgagaccgggc
cagttccgtcggctcagcggcccaatggcaggcctcggcggaggtagaggcagaggaatc
aacctgctcaggcgcagtctctcagacatgggaactggcggcccccctgccaagcaaagg
gacattgaaggagccttgctgaggctggcaggagaccagagggccaggagagacatgcgc
cacgacagcgacgctgaggatgacgaggatgtcaaaaagccagcgttgcagtcgtctgtt
gtagctacctccaaggagagaacacgccgagatctcattcaagatcaaaccatggatgag
aagggcaaacagagaaatcggcgcatgtttggcctgctgatgggtacgctgcaaaaattt
aagcaggagtctaacgtgtcttcagagaagcaaaaacgccgttcagagattgaacagaaa
ctggaagttcaggctgaagctgagaagaagaaagtagaaaatgaaaggagagaactgttt
gaggagagacgagccaagcagacagagctgagacttctggaacaaaaagtggaattagct
cagctgcaagaggagtggaccagccacaacaacaacctgttgaaattcattcgcacaaag
gccaagcctcacatcttctaccttcctggaaaaatgtgctccgcatctcagaaactcctc
gaagagtccaccaagaaactaaatgctgtgtttgaggaaagacgtgaagcttttgctgag
caactcaacaagatggaatcacgcccccggcgccagataaaccgcgaccaggacagcaac
gctgcctcaaggacggaccatccggcggagggtaagccagcaggtcaggcagccaagttg
acaggtaaaaggagtattgcagagatggaggaagaagatgaggatgaagaggatgaggaa
ggtgagaaggagggagatagaagtgtgacagagggggatgacggggagggaaggaaagaa
gagctagaaaaagtagaagaggaggaagggatggagtttagggaggaagggagtgagaaa
aaggaagctgaggagcagagggagaaggagggcaagaaagaaagtccaaagtcagaggag
atggaggtggaaatggaggcagagaaggaagaggtgaaggaagtgaacatagatgacagt
cagggggttgtagacctgcaagagaagcctctagaaactcctaaaccaagtgaaagcagc
caagaagcagcagcagacagcagcgatcagccccagcccagcctcactgtagagggccca
ccagagcagccccccccaacagagagcgcatctccagcccaagaacctcagacaacgtcc
acagtcgatgttcaggactctgcaaaccagaatccagcagaggagcccaaatcaaccgag
gaggccccgccaaagctacccgattcccaggaggcccctgcctccagccctaaaaaagat
gatggtggtgacaggggaaggaagaaggaaaaggcaaagcgacgccgcagtaagagctcc
tcctcttcctcctctggctcctcgtcagactcctcctcgagtggaagttcctcctcttct
tctggatccagccgctcctcctcgtcttcctcgtcttcatcttcttctaacagcagcagc
cgcagtagagacggaggcaagcgcaagaggcggacgtcagagaaaggtacagacaagaag
aagaaggaagagaggaggagcaacaagggaggggggagtagtggagggagggactccaag
gaatcaaaggagaagaagaggaggaacgaagaagggaggggcaggtcttcacggggcgat
agggaacataaagatagagacaggaaggacaagagacgctga

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