Oryzias melastigma (Indian medaka): 112143005
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Entry
112143005 CDS
T07439
Symbol
pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03013
Nucleocytoplasmic transport
oml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112143005 (pnn)
03015 mRNA surveillance pathway
112143005 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112143005 (pnn)
03041 Spliceosome [BR:
oml03041
]
112143005 (pnn)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112143005 (pnn)
Spliceosome [BR:
oml03041
]
Complex C
Other components
EJC/TREX
112143005 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Toxin_trans
Motif
Other DBs
NCBI-GeneID:
112143005
NCBI-ProteinID:
XP_024122530
Ensembl:
ENSOMEG00000011591
UniProt:
A0A3B3BY62
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All DBs
Position
LG22:20029999..20036160
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AA seq
653 aa
AA seq
DB search
MAVAVRSLQDQLEKAKESLKNVDDNIRKLTGRDPNESRPGQFRRLSGPMAGLGGGRGRGI
NLLRRSLSDMGTGGPPAKQRDIEGALLRLAGDQRARRDMRHDSDAEDDEDVKKPALQSSV
VATSKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESNVSSEKQKRRSEIEQK
LEVQAEAEKKKVENERRELFEERRAKQTELRLLEQKVELAQLQEEWTSHNNNLLKFIRTK
AKPHIFYLPGKMCSASQKLLEESTKKLNAVFEERREAFAEQLNKMESRPRRQINRDQDSN
AASRTDHPAEGKPAGQAAKLTGKRSIAEMEEEDEDEEDEEGEKEGDRSVTEGDDGEGRKE
ELEKVEEEEGMEFREEGSEKKEAEEQREKEGKKESPKSEEMEVEMEAEKEEVKEVNIDDS
QGVVDLQEKPLETPKPSESSQEAAADSSDQPQPSLTVEGPPEQPPPTESASPAQEPQTTS
TVDVQDSANQNPAEEPKSTEEAPPKLPDSQEAPASSPKKDDGGDRGRKKEKAKRRRSKSS
SSSSSGSSSDSSSSGSSSSSSGSSRSSSSSSSSSSSNSSSRSRDGGKRKRRTSEKGTDKK
KKEERRSNKGGGSSGGRDSKESKEKKRRNEEGRGRSSRGDREHKDRDRKDKRR
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggctgtgcggagtttgcaggatcagctcgaaaaagccaaagaaagcttgaaa
aatgtggacgataatattcgaaaacttacgggccgagatccaaatgaatcgagaccgggc
cagttccgtcggctcagcggcccaatggcaggcctcggcggaggtagaggcagaggaatc
aacctgctcaggcgcagtctctcagacatgggaactggcggcccccctgccaagcaaagg
gacattgaaggagccttgctgaggctggcaggagaccagagggccaggagagacatgcgc
cacgacagcgacgctgaggatgacgaggatgtcaaaaagccagcgttgcagtcgtctgtt
gtagctacctccaaggagagaacacgccgagatctcattcaagatcaaaccatggatgag
aagggcaaacagagaaatcggcgcatgtttggcctgctgatgggtacgctgcaaaaattt
aagcaggagtctaacgtgtcttcagagaagcaaaaacgccgttcagagattgaacagaaa
ctggaagttcaggctgaagctgagaagaagaaagtagaaaatgaaaggagagaactgttt
gaggagagacgagccaagcagacagagctgagacttctggaacaaaaagtggaattagct
cagctgcaagaggagtggaccagccacaacaacaacctgttgaaattcattcgcacaaag
gccaagcctcacatcttctaccttcctggaaaaatgtgctccgcatctcagaaactcctc
gaagagtccaccaagaaactaaatgctgtgtttgaggaaagacgtgaagcttttgctgag
caactcaacaagatggaatcacgcccccggcgccagataaaccgcgaccaggacagcaac
gctgcctcaaggacggaccatccggcggagggtaagccagcaggtcaggcagccaagttg
acaggtaaaaggagtattgcagagatggaggaagaagatgaggatgaagaggatgaggaa
ggtgagaaggagggagatagaagtgtgacagagggggatgacggggagggaaggaaagaa
gagctagaaaaagtagaagaggaggaagggatggagtttagggaggaagggagtgagaaa
aaggaagctgaggagcagagggagaaggagggcaagaaagaaagtccaaagtcagaggag
atggaggtggaaatggaggcagagaaggaagaggtgaaggaagtgaacatagatgacagt
cagggggttgtagacctgcaagagaagcctctagaaactcctaaaccaagtgaaagcagc
caagaagcagcagcagacagcagcgatcagccccagcccagcctcactgtagagggccca
ccagagcagccccccccaacagagagcgcatctccagcccaagaacctcagacaacgtcc
acagtcgatgttcaggactctgcaaaccagaatccagcagaggagcccaaatcaaccgag
gaggccccgccaaagctacccgattcccaggaggcccctgcctccagccctaaaaaagat
gatggtggtgacaggggaaggaagaaggaaaaggcaaagcgacgccgcagtaagagctcc
tcctcttcctcctctggctcctcgtcagactcctcctcgagtggaagttcctcctcttct
tctggatccagccgctcctcctcgtcttcctcgtcttcatcttcttctaacagcagcagc
cgcagtagagacggaggcaagcgcaagaggcggacgtcagagaaaggtacagacaagaag
aagaaggaagagaggaggagcaacaagggaggggggagtagtggagggagggactccaag
gaatcaaaggagaagaagaggaggaacgaagaagggaggggcaggtcttcacggggcgat
agggaacataaagatagagacaggaaggacaagagacgctga
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