Oryzias melastigma (Indian medaka): 112143047
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Entry
112143047 CDS
T07439
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03013
Nucleocytoplasmic transport
oml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112143047 (srrm1)
03015 mRNA surveillance pathway
112143047 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112143047 (srrm1)
03041 Spliceosome [BR:
oml03041
]
112143047 (srrm1)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112143047 (srrm1)
Spliceosome [BR:
oml03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
112143047 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
112143047
NCBI-ProteinID:
XP_024122554
Ensembl:
ENSOMEG00000014110
LinkDB
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Position
LG22:17696697..17707435
Genome browser
AA seq
860 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQENIAGIP
SAFLEQKKEEIRQRQIEQEKIASLRKVDEDKKEKDSRERAQSRSPRRRKTRSPSPRRRSP
VKRERKRSPSRSPRRKPSPVGGSSPPPLMQLPTKPSEQPSEPDSSGRAVQQQAVQEPSAT
GDTVVEVAKAGSATEVKETSPEKPLKKADRPRSRERERDPRRERPHHRSRSHSRSRRRRS
RSRSYSPRRRQSPRRRMSPRRRSPPRRGPPGSRHRHRRSPVRRRRSRSASSSGSSSSGSR
SPKKPLKRTSTTPPRKHRPPTSLSPVGKDKRSPSPRMRRGRGSASPPRSSGFKRKPEGRD
SPPENAKIRPSEGSESDEEKNEKGGAADSVQQRRQYRRQNQQSSSDSGSSSSEDEGPNRS
AAGPGARNGEVKKRRSRTPSPRRRFKEGSPRRRRSPSPGRRRHSPSPPRRRRSPSPPRRR
SPSPPPRRRSLSSRRYSPPIQRRYSPSPLPPQKRKMSNSPMKRTSPGPKRRPSRSPKRRS
SPVPRRRSPPSSSSPPRHRRSPMMPVRSTRDTRSPIPAGRRFSRSPVNRSHPLRRSTSPH
RRFEASSASPSNQRRQQSPSHSSKLIRRVSRTPERRNNQRSSLSPKPMRRVSSRSRSPSP
QPPAQKRLAPASVSPSPSRSASRSPPPPPAKKASSRSASQSPSKTSDVDGSGKKKKKKKE
KKHKKEKKHKKHKKHKKEKSSVTVTEDSQENPRPEEDDSKDSRKESESEADDGLDDLEKH
LREKALRSMRKAQISPSQMS
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggaacaagtgcggagcaagacaaccgtttcagcaacaag
cagaagaaactgcttaagcagctgaaatttgcagaatgcctggacaagaaggtggacatg
accaaagtgaacctagaagtcatcaaaccttggattactcagcgtgtgacagagattctg
ggatttgaagatgatgtggtcatagagttcattttcaaccaacttgaggagaagcatcca
gatagcaagatgatgcagatcaacctgacagggttcctgaatggaaagaatgcccgagag
ttcatgagagacctgtggcctctgctgctgagcgcccaagaaaacatcgccggcatcccc
tctgcctttctggaacagaagaaggaggaaatcaggcagagacagattgaacaggagaag
attgcttccctgaggaaggtggacgaggataagaaggaaaaggacagccgggagagagct
caatcaaggagtccaagacggcggaagacgaggtctccatcaccacgccgaaggtcacca
gtgaaaagagagagaaaacgcagtccatcacgatcccccaggcgtaaacctagcccagtc
ggcggcagctcccctcctcctcttatgcagctgcccacgaaaccttcagaacagccttcg
gagccagattcatcaggaagagccgtgcaacaacaagctgttcaagaaccttctgctaca
ggagacactgttgtagaggtagctaaagcaggctcagcaacagaggttaaggaaacatcc
ccggagaaacctctcaagaaagccgacagaccgaggtcacgtgaaagggagagggatccg
aggagagaaaggccgcatcaccgctcccgatctcactcccgctcccgtagacgacgctcc
cgttcaagatcttattctccacgtagaagacaaagtcctagaaggaggatgtctcctcgt
cgaaggagtccccctaggcgaggcccccctggctccagacatagacacagacgctcccct
gtccgcaggaggcgctctcgctctgcttcatcctctggaagcagctcctctggttcacgt
tctcctaaaaaacccctgaagagaacatctaccacaccaccccggaaacaccgccccccc
acatccttgagccccgtaggaaaggacaaacggtcgccttctccacggatgagaaggggc
agagggtctgcctccccgccaagatcatcaggtttcaagcgaaaaccagaaggaagagat
tccccgcctgaaaacgctaagattagaccttctgagggctctgagtccgatgaggaaaag
aatgaaaaaggaggagcagcagactccgtgcagcagcggcgtcagtatcgaagacagaat
caacaatcttcctcagatagtggatcctcctcctcagaggatgaggggcctaataggtca
gcagcagggcctggtgccagaaatggtgaagtgaagaaaaggcggagccgcacgccttca
cctcgtagacgcttcaaggagggctcgccaagaaggcgacgttctccctctcctgggcgc
agacgccactccccttcaccccctcgacgccgcagatctccctctcctcctagacgcagg
tctccctctcctccaccccgacgtaggtctttgtcctctaggcgatactctcctcctatc
cagcgtcggtacagcccttcacctttgcctcctcagaagaggaagatgtccaactcgcct
atgaaacgcacatcgccaggtccaaagcggcgcccctcccggtccccgaagcgtagaagc
tctcctgttcctaggaggcgctcacctccctcctcctcatctccacctagacacaggagg
agccccatgatgcctgttaggtccaccagggacactcgatctcctattccagcaggcagg
cgcttctctcgatcccctgtaaaccgcagtcatcctctgaggaggtccaccagcccccac
agacgctttgaagcctctagtgcatctccatctaatcagcggagacaacagtccccatcc
catagtagtaagctcattcgcagggtatctcgcactcctgagcgccgtaacaaccagaga
tcctctctaagccctaaacccatgaggcgagtgtcttcacggtccagatcaccttctcct
caacctccggctcagaaacgtctggctcctgcgtctgtttctccatcaccatctcgctca
gccagtcgctctcctccgccacctccagctaaaaaagccagtagtcgttctgctagtcag
tctccaagcaagacttctgatgtcgatggcagtggaaagaaaaagaagaagaagaaggaa
aagaagcacaaaaaagagaagaagcataagaaacacaaaaagcataagaaggagaaaagc
tcggtcactgtgactgaagacagtcaagaaaaccccagaccagaggaggacgactcaaaa
gattcaagaaaggagtcggagagcgaagcagacgatggtttggatgacctggagaagcac
ctccgggaaaaggcgctgcgctccatgaggaaggcccaaatatctccatcacaaatgtct
tga
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