Oryzias melastigma (Indian medaka): 112143100
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Entry
112143100 CDS
T07439
Name
(RefSeq) ribonuclease ZC3H12A isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112143100
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
112143100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
112143100
NCBI-ProteinID:
XP_024122608
Ensembl:
ENSOMEG00000000483
LinkDB
All DBs
Position
LG16:3541598..3548382
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AA seq
623 aa
AA seq
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MKTKSKTEQTSKNYPSEAVLSPVLMDQTLPTRRSPSEQPEADSEELQLKVDFFRKLGYST
AAVKTALRKQGLNTDTNAVLGELVRTSTGSAPCVSEGGNKSSKDPLPPPAGTMSSQQGDQ
KRADTELRPIIIDGSNVAMSHGNKEVFSCRGIQLAVNFFLDRGHSEITVFVPSWRKEQPR
SDTPITGQHILTELEKQKIVVFTPSRRVGGKRVVCYDDRFIVKEACDSGGVIVSNDTYRD
LQGERPEWKKCIEERLLMYSFVNDKFMPPDDPLGRHGPSLSNFLRVKPLPVEQKRQLCPY
DKKCTYGLKCKFYHPERANQSYLSLADELRERAQISAVTEDRSARLSPRQPQNDSPHPQD
KHLPRERQSASLPGLVSENKLLYWENPKKHPNHIGSSPAGGQYQKEWPSLHLAQNSYYGT
MPHECLDSGFDSFDSYSSDVSHSHSGNHQMRPHCQNAFSGPAFLEHTKTSQSCRCCSHTQ
QQNRNMDYKGQPFNKTYSPNMFPSNMPQQHSLPSHLNYNGTPHLPHSYWSDPFQGMPVIR
AVSSLPSEVHSSHSHSSSHQYQPWGQQPPSTSFDPERSELCKKLQAIFNPKQVDEVMTMF
PNLTDPEKLAAKILNLKAQRQIF
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgaagacaaagagcaaaacagagcagacctcaaaaaactatccttctgaagcagtttta
tcacctgtcttgatggaccaaacacttcccactcgaagatcaccttcagaacaaccagaa
gctgacagcgaggagctccagctcaaagtggacttcttcaggaagctgggttattccacc
gcagcagtgaagactgctttgagaaagcagggcctgaacacggacacaaacgccgttcta
ggggagctggtcaggaccagtaccggctctgcgccctgtgtttctgagggcggcaacaag
agctccaaagaccctctaccacctccagcggggaccatgtcatcgcagcaaggagaccaa
aagagagccgacacagaactgaggccgatcatcatagacggcagcaatgttgccatgagt
catggaaacaaggaagtgttctcatgccggggcattcagttagcggtgaacttcttcctg
gaccgaggtcacagtgagattacagtgtttgttccctcctggcgtaaagagcagcccaga
agtgatactcccataacaggacagcacatcctgacagagcttgaaaaacaaaagattgtg
gtcttcacgccatcccggcgcgttgggggcaaacgcgtggtctgctatgatgaccgtttc
attgtcaaggaggcgtgcgattctggcggagtgatcgtgtccaacgatacctaccgtgat
ctccaaggagaaagacctgagtggaagaaatgcatcgaagagaggctcctcatgtactca
tttgtaaatgacaaatttatgccaccagatgatcctctgggtcgacatgggcccagcctc
agcaacttccttagagtaaagccactcccagtggagcagaaacgacaactatgtccatat
gacaaaaagtgcacgtatggcctcaaatgtaagttctaccatcccgagagggcgaaccag
tcctatctgtcgctggctgacgaactgagagagagagcccagatttctgctgtgacagag
gatagatctgcgagattatccccgagacagcctcagaatgactctccccaccctcaggac
aaacacctccccagagagcggcagagtgcctcacttccaggtctggttagtgaaaacaaa
ctgctttattgggagaatccaaaaaagcatccaaaccatattgggtcttcccccgctggg
ggccagtaccagaaagagtggccttcgttacacttggctcagaactcctactacggtacc
atgcctcacgagtgtttggattctggtttcgactcttttgacagttacagctcagatgtt
tcacattctcacagcggcaatcaccaaatgagaccccactgtcaaaacgccttttcagga
ccggcttttttagaacacactaagaccagccagtcctgcaggtgctgttctcacacccag
caacaaaacagaaacatggactacaagggtcaaccctttaataagacctactctccaaat
atgttcccaagcaacatgcctcaacagcacagcctccccagccacttaaactacaatggg
acgccccacctgccgcatagctactggtcagatcccttccagggcatgcccgtcatcaga
gcggtgagcagcctcccttcagaggtccattcctcacattcccatagttcctcccatcag
taccaaccctggggacaacaaccaccttccacctcgtttgacccagagaggtccgaactt
tgcaaaaaactgcaagccatcttcaacccgaagcaagtggatgaggtcatgacgatgttc
ccgaatctgactgatccagaaaaactggctgcaaagatacttaaccttaaagctcaaagg
cagattttctaa
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