Oryzias melastigma (Indian medaka): 112143311
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Entry
112143311 CDS
T07439
Symbol
rad54b
Name
(RefSeq) DNA repair and recombination protein RAD54B
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112143311 (rad54b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oml03400
]
112143311 (rad54b)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
112143311 (rad54b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
112143311
NCBI-ProteinID:
XP_024122950
Ensembl:
ENSOMEG00000004345
LinkDB
All DBs
Position
LG16:8875611..8887614
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AA seq
941 aa
AA seq
DB search
MRRSGAPSQLLGNAVKKPRFLSPAVSLQTESKPLAPKTGLVNTLDKVQRSLSVAVESEIS
NVSAKSSQTAPALSRALARVLSTTKSKENEAGTKSVHGYKDFTEDENEGDGSSLEWTHGS
PQTPPPPPGRSACLPGTAGAGTGCAQDGVRYFSVVWCKASKKKHKRWEGDAVLITRGRAV
TLKDMEGKDIGKGSGYKVSELASLSEGETLMVGGKQVEVMGIISSEDYAKGRCFQEVQTE
QTESHAEAVAPPCHRPASKPFTPPTMLDRAGNLGPKSGGEQTYRPRYDPFAPNALVMPRP
STNHQWLHNKAALPVVEVVIDPHLTQYLRPHQRDGLLFLYECVMGLRVASRYGAILADEM
GLGKTLQSVALSWTLLKQGPYGGKPVAKRVLVVTPGSLVQNWKAEFNKWLGRERIGVFTV
DQDHRIEQFVLSPLHSVLVISYEMLLRCLEQVQKVEFGLIICDEGHRLKNSSIKTSSALT
SLSCDRRVILTGTPVQNDLQEFYAIIEFVNPGVLGSPTAYRKVYEEPILRSRQPSCTEEE
RVLGEERAAELSRLTGMFILRRTQEIINRYLPPRVDWTLFCEPSALQRELYQHLLCHRVF
RACLQGSTQTSTHLACITALKKLCNHPGLLYATVKERTESGSLESSLYEGLADLFPESYS
LTGFNTADSGKLLVLSDLLAAIRQLSPSDRVVLVSNYTQTLDLLQDLCKHMGYTFCRLDG
QTPTGQRQRLVDGFNSSYSQNFLFLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMA
RVWRDGQKKTVHIYRLLTAGTIEERIYQRQVSKQGLSGTVVDMGKAAEHTSFSSSELRDL
FSLTETPCLTHDLLNCGCSMDGTVNDVVEEEEEKGHTSGRPCQLGRQGDRKGPTQKHLSM
SELMQWRHFSGDAQSFSDPYLDYSRKHITFAFQTTISHLTQ
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgttcaggagcacccagtcagcttttgggcaatgcagtgaaaaaaccacgattt
ctatctccagctgtatcccttcaaactgaatcaaaacctctggcaccaaaaactggttta
gtaaatacattggataaagtccagagaagtctatctgtggcagtggaaagtgaaataagt
aatgtgtctgctaaaagcagtcaaactgccccggctctgtcacgggctctggctcgagtt
ctcagcaccactaagagcaaagaaaacgaggctggcactaaatctgtccatggatataaa
gactttacagaagatgaaaatgaaggagatggcagcagccttgagtggactcatggatct
cctcaaacacctcctcctcctcctggaagatcagcttgtttgcccgggactgcaggcgca
gggaccggctgcgctcaggatggagtgcgttacttcagtgtggtgtggtgtaaggccagc
aagaagaagcacaagcgctgggagggcgatgcggtgctgatcaccagaggacgagcagtc
actctcaaagacatggaggggaaggatattggaaaagggagcggctacaaggtgtcagag
ctggcctcactctctgaaggagaaactcttatggttggcggcaaacaggtggaggtgatg
gggatcatttcatcagaagattacgcaaaaggtcgctgctttcaggaagttcaaacggag
cagacggagtcgcacgcagaggcggtagcgcctccttgccaccgccccgcctccaagcct
tttactcctcctacgatgttggaccgagcggggaatctgggacctaaatcagggggggaa
caaacctacagaccccgctatgacccatttgctcccaatgcattagtgatgccccgcccc
tctacgaaccaccagtggcttcacaacaaagcagcccttcctgttgtcgaggtggtgatt
gatccccacctgacccaatacctgcgaccccatcagagagacggcttgctcttcctctac
gagtgtgtcatgggcctgagggttgcaagtcgctacggtgccattctggctgatgagatg
ggcctgggaaagactcttcagagtgtggcgctgtcatggactttgcttaaacagggaccc
tatggagggaagccggttgctaagcgcgtcctcgtggttacgcctggaagcctggtgcag
aactggaaagcagagttcaacaagtggctgggccgtgagagaatcggcgttttcactgtg
gatcaggaccacagaatcgagcagtttgtgttatctcctctgcacagcgttcttgtgatc
agctatgaaatgctgctgcgctgcctggagcaggtacagaaagtggaatttggtctcata
atatgcgatgagggtcacaggctaaagaacagcagcatcaaaacctcctcggcgctcacc
agcctcagttgtgaccgcagagtcattctcacagggacaccggtccaaaatgatctgcaa
gagttctatgcaatcatcgagtttgtaaatccaggggttcttgggtcgccgactgcctat
agaaaagtgtatgaggaaccgattctacgctcaagacagccgtcgtgcacagaggaggag
agagttttaggagaagagcgagccgccgaactctcccgtctgactggcatgttcatccta
aggaggacccaggaaatcataaaccgttacttaccccctcgcgtcgactggacgttgttc
tgcgagccgtcagccctgcagcgggagctgtaccaacatctcctctgccaccgcgtcttc
agagcttgtctgcagggctccacacagaccagcacacacctggcttgcattactgccctg
aagaagctctgcaaccaccccggcctgctctacgccactgtgaaggaaagaacagagagt
ggatctttggagagctccctatatgaaggactggcagatcttttcccagaatcatattct
ttaacagggttcaacactgccgactcaggaaaactgctggttctctctgacctgctggct
gccatcagacagctcagtccttcagacagggtggttctagtgtcaaactacactcagact
cttgacttgctgcaggacctgtgcaaacacatgggctacaccttctgtcgattagatggt
caaactccaacgggccagaggcagcgactggttgacggctttaacagctcctattctcag
aacttcctgtttctcctgagctctaaagccggcggggtggggctgaacctgatcggagcg
tctcacctggtgctgtacgacatcgactggaaccctgccaacgacatccaggccatggct
cgagtgtggagagatggacagaagaaaactgtccacatttatcgacttctcactgcaggt
acaattgaagagcgtatatatcagagacaggtgtccaagcagggcctgtcggggactgtg
gttgatatgggaaaagcagcagaacacacaagtttctcctctagtgagctgcgagatctc
ttcagcctgacggaaactccctgtctgactcacgacctgttgaactgcggctgcagcatg
gacggcacagtaaacgacgtggtggaagaggaggaggagaagggccacacttctggtagg
ccctgccagctcggtcgccaaggtgaccgtaaagggccgacgcagaagcatctcagcatg
tccgagctcatgcagtggagacacttctccggggatgcacagtcgttctcggacccctac
cttgattactcacgaaagcacatcaccttcgccttccagaccaccatctctcacctgacc
cagtaa
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