Oryzias melastigma (Indian medaka): 112143342
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Entry
112143342 CDS
T07439
Symbol
rnf115
Name
(RefSeq) E3 ubiquitin-protein ligase RNF115
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112143342 (rnf115)
04121 Ubiquitin system [BR:
oml04121
]
112143342 (rnf115)
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112143342 (rnf115)
Membrane trafficking [BR:
oml04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
112143342 (rnf115)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112143342 (rnf115)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-RING_UBOX
zf-C3HC4_2
zf-rbx1
zf-C3HC4
Zn_ribbon_19
zf-RING_5
zf-Nse
zf-ANAPC11
C1_2
zf-RING-like
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
112143342
NCBI-ProteinID:
XP_024122994
Ensembl:
ENSOMEG00000008504
LinkDB
All DBs
Position
LG16:7763660..7774346
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AA seq
314 aa
AA seq
DB search
MAEAAAVPSHRFFCHCCKGEVNPKLPEYICPRCDSGFIEEVTEDSSLLDGGANGIDDTAT
QFAELWHLLLLERPFTTDSDTPDSEPRLPGSRLGSFGDFGGLGGGPIGGSVPAGLGGQMG
GLLGANEHFGPGRPPRLHSQRRYRFRGSSRPERSPAVEGIVQQFLAGLFANSGVPGSPPL
SWTGMLHSNPGDYAWGQGGLDAVITQLLGQLENTGPPPAEKEKISSLPTVNISQEQADCC
MECPVCKEDFTVGEPVRKLPCNHFFHSDCIVPWLEMHDTCPVCRMSLSGEDSSQPQSESP
SLPTDPRTQERWSF
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggctgcggctgttccctcgcatcggtttttctgtcactgttgtaagggagaa
gtaaatcccaaactcccggaatacatctgtccaagatgtgattcaggtttcatagaggaa
gtaacagaggattccagtcttctagacggaggtgcaaatggaatagatgacacagccaca
cagtttgcagagctgtggcacctcctgttattggagaggccgtttacaacagacagtgac
actcctgactctgagcctcggctccccggcagtcgtttggggagttttggggacttcgga
ggactgggaggtggaccgatcgggggatcagttccagccggcctcggggggcagatgggc
ggcctgttaggagccaacgaacactttggacccggccgcccacctcgcctgcacagccag
aggagataccggttcagaggcagcagcagaccagagcgctcacctgctgtggaggggatt
gtacaacagtttcttgctggtctttttgccaactctggagtgcctggctcacctcccctg
tcatggacagggatgctgcactccaaccccggggattacgcatgggggcaaggagggtta
gatgcagtgataacacagttactaggtcagctggagaacacaggacctcctccagctgag
aaagaaaaaatctcttcactcccaactgtcaatatatctcaggaacaagcagattgctgt
atggagtgtccagtgtgcaaagaggacttcacggtgggagagcctgtcagaaaactaccc
tgcaatcacttctttcattcagactgtatagtaccatggctggaaatgcacgacacgtgt
ccggtgtgtaggatgagtttgagtggagaagacagcagccagccccagtcagagtccccg
tcgctccccacggacccccgcacacaggagagatggtctttctga
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