Oryzias melastigma (Indian medaka): 112143432
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Entry
112143432 CDS
T07439
Symbol
nbn
Name
(RefSeq) nibrin isoform X1
KO
K10867
nibrin
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03440
Homologous recombination
oml04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112143432 (nbn)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
112143432 (nbn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oml03032
]
112143432 (nbn)
03400 DNA repair and recombination proteins [BR:
oml03400
]
112143432 (nbn)
DNA replication proteins [BR:
oml03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
112143432 (nbn)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
112143432 (nbn)
BRCA1-C complex
112143432 (nbn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nbs1_C
NIBRIN_BRCT_II
FHA
Yop-YscD_cpl
BRCT
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
112143432
NCBI-ProteinID:
XP_024123155
Ensembl:
ENSOMEG00000006065
UniProt:
A0A3B3BHP5
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Position
LG16:8572095..8584357
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AA seq
807 aa
AA seq
DB search
MWILSPLQNGGETHYLLCGREYVVGRKNCDILLPSDQSISRAHAHLTATDQTLTLTDSSK
YGTFVRDERVTSPVTLMSGDEVTFGVFHSKFRVIEQKLVVCSSCLDNDGKASLTRALGGL
GGRLVNSWSLDCTHLAMPTVKVTIKTISALLCCCPIVKPEFFSELYNAVQQKRPPPKPES
FTPEIDEPVLSDAKVNLGAVSARKELFNGKTFIFLSAKQLKRLSGAVRFGGGSSQLLEEG
ALPYNLLQSKNTCVVDVLTASSQSLLPASITEWANSVKDVLARKGLRVIPESEIGLAAIY
ASCDQYCNPSCPVPDSDSAPKVTPRIPSASLSQSVTVDETVLPAASQNITAYAVNTEPSQ
RKEVCEITGVGVAVEETQEKKEVQNSRYFSKSKLSAHTAIPQFVVPETMPSTFNNTDSLK
KNRHSKAKGEDHADVRPQPSASRTSAGTRSVLHKQSPQKPKTSPQTSPQKQMTLTNFFQS
VNKKRSLEDEPSAVTSEPKRAATETSTAEQAQNASLPLRAPKALPQTPALLDVHSKKPQS
RKRKELEIELEELESIMSEDMDLFDGEISTSQDQQEEPKAKTSAKQKENLQDGNPSSKRQ
RIHLEKNGMNSPDIYSEQNNVSKTSKLLQLPDFPSEHQESEKPPETSQSSTTEEMKQLEE
GEGSFVEDAELLEIDICQPEKETPAKKPVAIKQEVEESKIDEDLPKKLLLVEFRSLMVST
SPKIKPKPTQQNSHAKNFKCFRKRQTPGVGSTPIIGGSDLLVHNRGKNTDLDEWLRDAVE
EEHQNQQDEWMGDDLFRYNPTKLSRRR
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgtggatattgagccccctgcagaatggaggtgaaacccactatctgctctgcggtaga
gaatatgtggtgggccgcaagaactgtgacatccttcttccgagtgaccagtccatcagc
agagctcacgctcacctgactgcgactgaccagaccctcactcttacagactcctccaag
tacggcacgtttgtcagggacgagcgtgtgacatcacccgtgaccctaatgtcgggggac
gaagtcacatttggggtttttcatagcaaattcagagtgatcgagcagaagcttgtggtg
tgctcatcatgcttggacaatgacgggaaggcttctctaactcgggcgctggggggttta
ggtgggaggttggtgaactcgtggagtctggactgcacccacctggccatgcccacagtt
aaagtgaccatcaagaccatctcagctttgctgtgctgctgtcccatcgtgaagccagag
ttcttctcagagctctacaacgcagtgcagcaaaaacgtccacctcctaaacctgagagc
ttcactcctgagatcgacgagcccgtcttgagtgacgcaaaagttaatcttggagcggtc
tcagctcgtaaagagctgttcaatggaaagaccttcattttccttagtgccaagcagctg
aagcgcctaagtggagcggtgaggtttggcggtggaagcagccagctgctggaggaggga
gcgctgccatacaacctgctgcagtctaaaaacacctgcgtggtcgacgttctgacagcc
agctcccaaagtttactaccagcttccatcacagagtgggcaaactctgtaaaggatgtc
cttgcaaggaaaggtcttcgagtcatcccagagtcagaaattggtttggctgctatctat
gcttcctgtgatcagtactgtaacccatcctgtccagtaccagactcagattctgcacca
aaagtgactcccagaattccgagtgcttcgctgtcacagagtgtaactgtggatgagacc
gttctccctgcagcgtctcagaacatcacagcttacgctgtcaacacagaaccctcacaa
aggaaagaggtttgtgaaattactggagtgggagtggcagtggaagaaactcaggagaaa
aaagaagtccagaacagcagatacttctctaaatccaagctttcagctcacacagcaatc
cctcagtttgttgttcctgaaacaatgccctcaactttcaacaacactgactctttaaag
aagaatcgccactccaaggcgaaaggtgaagaccatgcagatgtcagacctcagccgtct
gcatccaggaccagtgctggtacacggtccgtcctccataaacaatcccctcagaagcca
aaaacctctccgcagacgtccccacagaaacagatgacactgaccaacttctttcagtct
gtcaacaaaaaaagatctttggaggacgagccctcggctgtaacgtcagagccaaagcgg
gctgcaacagaaacatccaccgccgagcaggcccagaacgcctcactaccactcagagcc
cccaaagctctgccccagactccagctctgttggacgttcactcaaagaaaccgcagagc
agaaagaggaaggagttggagatcgagctggaagagctggagtccattatgtctgaagac
atggatttgtttgatggtgagatttcaaccagtcaagaccagcaagaggagccaaaagcc
aaaacttctgcaaaacagaaagaaaatctgcaggatgggaatccttcaagcaagcgtcag
cggatccacctagaaaaaaacggaatgaactcaccagacatctacagtgaacagaacaat
gtctccaaaacatcaaagcttcttcagctaccagacttcccgagcgaacatcaggagtcg
gagaaacctcctgaaacatctcaatccagcacaacagaagaaatgaagcagttggaagag
ggggaaggatcgttcgttgaggacgccgaattactggaaatcgatatttgccagcctgaa
aaggaaactccagctaaaaaacctgtcgctatcaagcaggaggtggaagaatctaaaatc
gatgaggaccttcctaagaagctgcttctggtggagttcagatctctgatggtatcaaca
tccccgaaaatcaaacccaaacccacgcagcagaacagccatgccaagaacttcaaatgt
ttccgcaagaggcagactccaggtgttggcagcacccccatcatcggaggatccgatttg
ttggttcataaccggggcaagaacactgatctggatgaatggctgagagatgcagtggag
gaggagcatcagaaccagcaggatgaatggatgggagatgacttgttcaggtacaaccct
accaagctgagcaggagaagatga
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