Oryzias melastigma (Indian medaka): 112143474
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Entry
112143474 CDS
T07439
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04517
IgSF CAM signaling
oml04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
112143474
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112143474
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
oml04812
]
112143474
Cytoskeleton proteins [BR:
oml04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
112143474
Intermediate filaments
Intermediate filament-binding proteins
112143474
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
BORCS6
DUF7854
LPD22
DUF8401
PH_11
Motif
Other DBs
NCBI-GeneID:
112143474
NCBI-ProteinID:
XP_024123258
LinkDB
All DBs
Position
LG16:18156371..18179350
Genome browser
AA seq
2335 aa
AA seq
DB search
MTTVAAELEPMDLQQQYSETVSSRWDDDWDNENSSARLFERSRIKALADEREAVQKKTFT
KWVNSHLSRVSCRITDLYLDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQ
FLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKRSAKDALLL
WCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLA
EQHLGLTRLLDPEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAIETE
KMIEKYESLASGLLEWIQQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKGN
LEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRMELIRQEKLE
QLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETDIAAYEERVQAV
VAVTTELERERYHDIKRIAARKDNVIRLWEYLLELLKARRQRLEVNLGLQRVFQEMLYIM
DWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIAIQADRVKAVSSNANKYSITDGGY
KPCDPRVIQDRVAHLEFCYQELTQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQIL
SSVERGRDLTGALRLLSQQRALEDEMSGRAGHLQHTVTEGRAMLQVGHFGSEKIQERISD
LQSQWAGLEQHAAATRRRLEQALALHQFQADADDVDAWTLDAVRIVSSAETGHDEFSTQA
LVRKHKDTAAEVASYRPVIDALHEQAATLPEEEAESEEVRGRLAGIEERYREVAELTKLR
KEALQDALARYKMFSEADACQVWVEEKEQWLNGTEIPEKLEDLEVVQHRFESLEPEMNNQ
ASRVAVVNQIARQLMHSGSPGDDIKAQQDKLNNRWGSFRDLLDQKKEALNSALGVQNYHL
DCNETKSWIKEKTKVIESTQELGNDLTGVMALQRKLTSMERDLAAIEDKLGDLRGEAQRL
AEEHPDQARAITGRLAEITAVWEEMKDSLKNREESLGEARKLQQFLRDLDDFQSWLSRTQ
TAVASEDMPNTLAEAEKLMAQHQGIKNEILNYEEDYQKMRDMGDMVTRGQTDAQYMFLQQ
RLQALDTGWNELHKMWENRQSLLSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEMPPTLE
GAEAAIKKQEGFMTTMDANEDKINGVMEAGRRLASDGNINAEKIKEKVASIDDRHKKNRE
AAVELLIRLKDNRDLQKFLQDCQELSLWISEKMLTAQDLTYDEARNLHSKWLKHQAFMAE
LQSNKEWLDKIQKDGALLVSEKPETEVVVKEKLGALHTMWEELESTTQTKAQCLFDANKA
ELFSQSCTDLDKWLGGLEGQIQSDDYGKDLTSVNILLKKQQMLENQVEVRQREVVELQSQ
VKALGQEAKDTDEVDGRRQVVEKKFQELLEPLRLRRHLLVASREVHQFNRDVEDEILWAQ
ERIPVATSTNHGYNLQTVQQLMKKNQTLQKELQGHQPRIDDILERSRSLLQDQASGSEGI
HRRLAELQELWGRLREEGQRRHARLQEAHKAQQYYFDAAEAEAWMSEQELYMMSEEKAKD
EQSAITMLKKHQIMEQAVEDYAETVHQLSKTSRGLVADEHPDSERIGMRQSQVDKLYAGL
KDLSEERRSKLEERLRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREF
ARDTGNIGQERVDAVNRLADELINAGHGDAATVAEWKDGLNEAWADLLELIDTRTQILAA
SFELHKFYHDAKEILARIADKQKKLPEEIGRDQNTVEMLQRMHTTFERDIQALGAQVRQL
QEDAVRLQSAYAGDKADDIQRKDGEVLEAWRILLEACDCRRLRLLDTGDKFRFFSMVRDL
LLWMDDVIRLIEAQENPRDVSSVELLMNNHQGIKAEIDARNDSFTACIELGKALLARKHY
ASEEIKEKLLQLTDKRKEMIDKWEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEPYLSSR
EVGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTLELLEVRRQQEELERSRRPPSP
ETLHQEEVQQEQSVVTQNGLPSDEDSPRNGLEGGGLVNGLVERSSKEPSPTPSPSLAKKN
KNSQSSTLPLKSQDSPVQMEGLLHRKHEWEGHSKKASNRSWHNVYCVICHQEMSFYKDSK
AAAQGAAYHNQPPLNLKDASCDIASDYKKKKHVFKLRVADGNEYLFQAKDEDEMSSWIQV
ILNAAAPELTDTQSSHPSTPVSGRAQTLPATITLTTESSPGKKEKRFSLFSKKKQ
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggtggccgccgagctggagcccatggacctgcagcagcagtacagcgagacg
gtcagcagccgctgggacgacgactgggacaacgagaacagctcggcccgcctcttcgag
cgctcccgcatcaaggcgctggcagatgagcgggaggcggtgcagaagaagaccttcacc
aagtgggtgaactcccacctgtccagagtgtcctgcaggatcaccgacctctacctggac
ctgagagacggccgcatgctcatcaagctgctggaggttctgtccggagagcggctgccg
aagcccaccaaaggccggatgcgcatccactgcctggagaacgtggacaaagctctgcag
ttcctgaaggagcagcgggtccacctggagaacatgggctcgcacgacatcgtggacggg
aaccaccggctcacgctgggcctcatctggaccatcatcctgcgcttccagatccaggac
atcagtgtggagacggaggacaacaaggagaagcgttcggccaaagacgcgctcctgctg
tggtgtcagatgaagacggcgggatatcccaacgtcaacatccacaacttcactaccagc
tggagagacggcatggccttcaacgctctcatccacaaacacagaccggatctaatcgac
ttcgacaaactgaagaagtccaacgctcactacaacctgcagaacgccttcaacctggcg
gagcaacatctgggcctgacccggctgctggacccagaagacatcagcgtggatcatccg
gatgagaagtcggtcatcacctacgtggtgacgtactaccactacttctccaagatgaag
gcgctgaaggtggaggggaaacggatcgggaaggtgcttgacaacgccatcgagacggag
aagatgatcgagaagtacgagagtctggcctctgggttgctggagtggatccagcagacc
atcatcatcctcaacaacaggaagttcgccaactctttggtgggcgtccagcaacagctg
caggccttcaacacctaccgcacggtggagaagccccccaagttcaccgagaagggaaac
ctggaggtcctcctcttcaccatccagagcaagatgagggccaacaaccagaaagtgtac
atgccacgggagggaaagctcatctcagacatcaacaaggcgtgggagcgtctggagaag
gcggagcatgagcgtgagctggctctgaggatggagctgattcgtcaggagaagctggag
cagctggcccggcgcttcgaccgcaaggcggcgatgagggagacctggcttagtgagaac
cagcggctggtgtcccaggacaacttcggcttcgacctgcaggccgtcgaggcggccacc
aagaagcacgaggctatcgagacggacatcgcggcgtacgaggagcgtgtgcaggccgtg
gtggcggtgaccaccgagctagagcgggagcgctaccatgacatcaagcgcattgcggct
cgtaaggacaacgtgatccggctgtgggagtacctgctggaactgctgaaggcccgccga
cagcggctggaggtgaacttgggcctgcagagagtcttccaggagatgctgtacataatg
gactggatggacgagatgaagatgctgcttctgtcccaggattatgggaagcaccttctg
ggcgtggaggacctcctacagaagcacgcgctggtggaggcggacatcgccatccaggcc
gacagagtgaaggccgtctccagcaacgccaacaagtactccatcacggacggcggatac
aaaccctgcgacccgcgggtcatccaggaccgggtggcccaccttgagttctgctaccag
gagttgacccagctggctgccgagcgccgtgcccgcctggaggagtctcgccgcctttgg
aagtttttctgggaaatggcggaagaggagggctggatccgggagaaggagcagatcctg
tcctcggtggagcgggggagggacttgacgggggcgctgcgcctcctgagtcagcagcgc
gccctggaggacgaaatgagtggccgggccggccacctgcagcacactgtcacggagggc
cgggccatgctgcaggtcgggcacttcggctcggaaaagattcaggaaaggatcagtgac
ctgcagtcccagtgggcggggctagagcagcacgccgctgcaacccgcaggaggctggag
caagcgctggccctgcaccagttccaggcggacgcggacgacgtggatgcatggacgctg
gatgcggttcgcatcgtttccagtgcggagacgggccacgacgagttctccacccaggcg
ctggtccggaagcacaaagacaccgccgcagaggtcgccagctaccgcccggtcattgac
gcgttgcacgagcaggccgccacgctgccagaggaggaggcggagtcagaggaggttcgc
gggcggctggctggcattgaggagcgctacagggaggtggcggagctgaccaaactgagg
aaggaggcgctgcaggacgctctggcgcgctacaagatgttcagcgaggccgacgcctgc
caggtgtgggtggaagagaaggagcagtggcttaacggcacggagatcccagagaagctg
gaagacctggaggtggtccagcaccggtttgagagtctggagccagagatgaacaaccag
gcgtcccgcgttgcggtggtgaaccagatcgcccggcagctgatgcacagcggttctccg
ggggatgacatcaaggcccagcaggacaagctcaacaacaggtggggttcgttccgggat
ctcctggaccagaagaaggaggcgctgaactctgccctgggggtccagaactaccacctg
gactgcaacgagaccaagtcttggatcaaagagaagaccaaagtgattgaatccactcag
gagctgggcaatgacctgacgggcgtcatggctttgcagcgcaagctgaccagcatggag
cgagacctggcggccatcgaggacaagctgggcgacctccggggcgaggcccagcggctg
gcggaggagcacccggaccaggccagggccatcacgggccgtctggcggagatcacggcg
gtgtgggaggagatgaaggactcgctgaagaaccgggaggagtctctgggcgaagcccgg
aaactgcagcagttcctgcgagatctggacgacttccagtcctggctgtcccgcactcag
accgccgtggcgtctgaggacatgcctaacacgctggccgaggccgagaagctgatggct
cagcaccagggcatcaagaacgagatcctgaactacgaggaggactaccagaagatgcgg
gacatgggggacatggtgacgcgtggccagacggatgcgcagtacatgttcttgcagcag
cggctgcaggcgctcgacaccggctggaatgagctgcacaagatgtgggagaaccggcag
agtctgctgtctcagtcacacgcctaccagctgttcctgagggacaccaagcaggccgag
gccttcctcaacaaccaggaatacgtcctggcccacacggagatgccccccactctggag
ggcgccgaggctgccatcaaaaagcaggaaggcttcatgaccaccatggatgccaacgaa
gacaagatcaacggcgtgatggaagccggccggcggctggccagcgacggaaacatcaac
gccgagaagattaaggagaaggtggcctccatcgatgacaggcacaagaagaacagggag
gctgctgtggagctgctgatcagactgaaggacaaccgagacctgcagaagttcctccag
gactgtcaggagttatctctgtggatcagcgagaagatgctgacggctcaggacctcacc
tacgacgaggccaggaacctgcacagcaagtggctgaagcaccaggccttcatggccgag
ctgcagtccaacaaggagtggctggacaagatccagaaggacggggctctgctggtgtcg
gagaagccggaaaccgaggtggtggtgaaggagaaactcggagcgctccacacgatgtgg
gaggagctagagtccaccacgcagaccaaagctcagtgtctattcgatgccaacaaagcg
gagctgttctctcagagctgcaccgacctggacaagtggctggggggtctggagggtcag
atccagtccgacgactacggcaaagacctgacctccgtcaacattctgctgaagaagcag
cagatgctggagaaccaggtggaggtgcgtcaaagggaggtggtggagttgcagagccag
gtgaaggcgctcggtcaggaggcgaaggacacggacgaggtggacgggcggaggcaggtg
gtggagaagaagttccaggagctgctggagccgctcagactgcgccgccacttgctggtg
gcgtccagagaagtccaccagttcaaccgggatgtggaagacgagatcctgtgggctcag
gagaggattcccgtggccacctccaccaaccacggatacaacctgcagacggtgcagcag
ctcatgaagaagaaccagacgctgcagaaggaactgcagggccaccagcctcgcatcgac
gacatactggagcgcagccgcagcctgctccaggaccaggcctccggctccgaggggatc
caccggcgccttgccgagctgcaggagctgtgggggcggctgagggaggaggggcagcgg
cgccacgcccggctgcaggaggcccacaaggcgcagcagtactactttgatgccgccgag
gccgaagcctggatgagcgagcaggagctttacatgatgtctgaggagaaggccaaggac
gagcagagcgccatcaccatgctgaagaagcaccagattatggagcaggccgtggaggac
tacgcagagaccgtccaccagctgtccaagaccagcagaggcctggtggcggacgaacac
cccgacagcgagcggatcggcatgcggcagtctcaggtggataagctgtacgccggcctg
aaggacctgtcagaggagaggcggagcaaactggaggagaggctccgcctcttccagctg
aaccgagaggtcgacgacctggagcagtggatagcggagcgggaggtggtggccgggtcg
cacgagctgggtcaggactacgagcatgtgacgatgctgcaggagcgcttccgggagttt
gcgcgggacacgggcaacatcgggcaggaacgcgtggatgccgtcaaccgcctcgcagat
gagctgatcaacgccggacacggcgacgccgccacggtggcggagtggaaggacgggctg
aacgaggcctgggccgacctgctagagctcatcgacacccggacgcagatcctcgccgcc
tccttcgagctccacaagttctaccacgacgccaaggagatcctggcgcgcatcgcagac
aagcagaagaagctgccggaggaaattggccgcgaccagaacacagtggagatgctgcag
aggatgcacaccaccttcgagcgggacatccaggcgctcggagcacaggtgaggcagctg
caggaagacgccgtccgcctacagtctgcgtacgccggagacaaggcagacgacatccag
cgtaaagacggcgaggtcctggaggcgtggaggatcctcctggaggcctgcgactgccgc
cggttacgcctgctagacacgggcgacaagtttcgattcttcagcatggtgcgcgacctg
ctgctctggatggacgacgtgatccggctcatcgaggcccaggagaaccccagagacgtt
tcctctgtggagctgctgatgaacaaccatcagggcatcaaagccgagattgacgcgcgc
aatgacagcttcaccgcctgcatcgagctcggcaaggcgctgctcgcacgcaagcactac
gcatcagaggagatcaaagagaagctgctccagttgaccgacaaacggaaggagatgatt
gacaagtgggaggatcggtgggagtggcttcgcctcatcctggaggtgcatcagttctcc
agagacgcgggtgtggccgaggcctggctgctgggtcaggagccgtacctgtccagcagg
gaggtggggcaaagcgtggacgaggtggagaagctcatcaagcggcacgaagccttcgag
aagtccgccgccacctgggaggaacgcttctctgcgctggagagactgaccactctggaa
ctgctggaggtcaggaggcagcaggaggagctggagcgcagcaggagacctccttctcca
gagacgctccaccaggaggaggtccagcaggagcagagtgttgtcactcagaacggactc
ccctcagacgaggactctccgcggaacgggctggaaggtgggggcctcgtgaacggtctc
gtggagcgcagctccaaggagccaagccccaccccctcgccatcgttggccaagaagaat
aaaaacagccagtcatccacgctgcccctcaagagccaggactccccagtgcagatggag
gggctcctgcaccgcaagcatgagtgggaggggcacagcaaaaaggcctccaacaggtca
tggcacaacgtctactgcgtcatctgccaccaggagatgagtttctataaggacagcaag
gcagcggcccagggggcggcgtaccacaaccagccccccctcaacctgaaggacgccagc
tgcgacatcgcctcagattataagaaaaagaaacacgtcttcaagctcagagtggcagat
ggaaacgagtatctgttccaagccaaagacgaggatgaaatgagctcctggatccaggtc
atcctaaacgccgccgcacctgaactcaccgacactcagagcagccaccccagcacgccg
gtctctgggcgcgctcagacgctgccagccaccatcacgctcaccaccgagtcgagcccc
ggcaagaaggagaagcgcttcagcctgttcagcaagaagaagcagtga
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integrated database retrieval system
