Oryzias melastigma (Indian medaka): 112143474
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Entry
112143474 CDS
T07439
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112143474
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
oml04812
]
112143474
Cytoskeleton proteins [BR:
oml04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
112143474
Intermediate filaments
Intermediate filament-binding proteins
112143474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
PH_11
BORCS6
Motif
Other DBs
NCBI-GeneID:
112143474
NCBI-ProteinID:
XP_024123258
LinkDB
All DBs
Position
LG16:18156371..18179350
Genome browser
AA seq
2335 aa
AA seq
DB search
MTTVAAELEPMDLQQQYSETVSSRWDDDWDNENSSARLFERSRIKALADEREAVQKKTFT
KWVNSHLSRVSCRITDLYLDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQ
FLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKRSAKDALLL
WCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLA
EQHLGLTRLLDPEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAIETE
KMIEKYESLASGLLEWIQQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKGN
LEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRMELIRQEKLE
QLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETDIAAYEERVQAV
VAVTTELERERYHDIKRIAARKDNVIRLWEYLLELLKARRQRLEVNLGLQRVFQEMLYIM
DWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIAIQADRVKAVSSNANKYSITDGGY
KPCDPRVIQDRVAHLEFCYQELTQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQIL
SSVERGRDLTGALRLLSQQRALEDEMSGRAGHLQHTVTEGRAMLQVGHFGSEKIQERISD
LQSQWAGLEQHAAATRRRLEQALALHQFQADADDVDAWTLDAVRIVSSAETGHDEFSTQA
LVRKHKDTAAEVASYRPVIDALHEQAATLPEEEAESEEVRGRLAGIEERYREVAELTKLR
KEALQDALARYKMFSEADACQVWVEEKEQWLNGTEIPEKLEDLEVVQHRFESLEPEMNNQ
ASRVAVVNQIARQLMHSGSPGDDIKAQQDKLNNRWGSFRDLLDQKKEALNSALGVQNYHL
DCNETKSWIKEKTKVIESTQELGNDLTGVMALQRKLTSMERDLAAIEDKLGDLRGEAQRL
AEEHPDQARAITGRLAEITAVWEEMKDSLKNREESLGEARKLQQFLRDLDDFQSWLSRTQ
TAVASEDMPNTLAEAEKLMAQHQGIKNEILNYEEDYQKMRDMGDMVTRGQTDAQYMFLQQ
RLQALDTGWNELHKMWENRQSLLSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEMPPTLE
GAEAAIKKQEGFMTTMDANEDKINGVMEAGRRLASDGNINAEKIKEKVASIDDRHKKNRE
AAVELLIRLKDNRDLQKFLQDCQELSLWISEKMLTAQDLTYDEARNLHSKWLKHQAFMAE
LQSNKEWLDKIQKDGALLVSEKPETEVVVKEKLGALHTMWEELESTTQTKAQCLFDANKA
ELFSQSCTDLDKWLGGLEGQIQSDDYGKDLTSVNILLKKQQMLENQVEVRQREVVELQSQ
VKALGQEAKDTDEVDGRRQVVEKKFQELLEPLRLRRHLLVASREVHQFNRDVEDEILWAQ
ERIPVATSTNHGYNLQTVQQLMKKNQTLQKELQGHQPRIDDILERSRSLLQDQASGSEGI
HRRLAELQELWGRLREEGQRRHARLQEAHKAQQYYFDAAEAEAWMSEQELYMMSEEKAKD
EQSAITMLKKHQIMEQAVEDYAETVHQLSKTSRGLVADEHPDSERIGMRQSQVDKLYAGL
KDLSEERRSKLEERLRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREF
ARDTGNIGQERVDAVNRLADELINAGHGDAATVAEWKDGLNEAWADLLELIDTRTQILAA
SFELHKFYHDAKEILARIADKQKKLPEEIGRDQNTVEMLQRMHTTFERDIQALGAQVRQL
QEDAVRLQSAYAGDKADDIQRKDGEVLEAWRILLEACDCRRLRLLDTGDKFRFFSMVRDL
LLWMDDVIRLIEAQENPRDVSSVELLMNNHQGIKAEIDARNDSFTACIELGKALLARKHY
ASEEIKEKLLQLTDKRKEMIDKWEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEPYLSSR
EVGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTLELLEVRRQQEELERSRRPPSP
ETLHQEEVQQEQSVVTQNGLPSDEDSPRNGLEGGGLVNGLVERSSKEPSPTPSPSLAKKN
KNSQSSTLPLKSQDSPVQMEGLLHRKHEWEGHSKKASNRSWHNVYCVICHQEMSFYKDSK
AAAQGAAYHNQPPLNLKDASCDIASDYKKKKHVFKLRVADGNEYLFQAKDEDEMSSWIQV
ILNAAAPELTDTQSSHPSTPVSGRAQTLPATITLTTESSPGKKEKRFSLFSKKKQ
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggtggccgccgagctggagcccatggacctgcagcagcagtacagcgagacg
gtcagcagccgctgggacgacgactgggacaacgagaacagctcggcccgcctcttcgag
cgctcccgcatcaaggcgctggcagatgagcgggaggcggtgcagaagaagaccttcacc
aagtgggtgaactcccacctgtccagagtgtcctgcaggatcaccgacctctacctggac
ctgagagacggccgcatgctcatcaagctgctggaggttctgtccggagagcggctgccg
aagcccaccaaaggccggatgcgcatccactgcctggagaacgtggacaaagctctgcag
ttcctgaaggagcagcgggtccacctggagaacatgggctcgcacgacatcgtggacggg
aaccaccggctcacgctgggcctcatctggaccatcatcctgcgcttccagatccaggac
atcagtgtggagacggaggacaacaaggagaagcgttcggccaaagacgcgctcctgctg
tggtgtcagatgaagacggcgggatatcccaacgtcaacatccacaacttcactaccagc
tggagagacggcatggccttcaacgctctcatccacaaacacagaccggatctaatcgac
ttcgacaaactgaagaagtccaacgctcactacaacctgcagaacgccttcaacctggcg
gagcaacatctgggcctgacccggctgctggacccagaagacatcagcgtggatcatccg
gatgagaagtcggtcatcacctacgtggtgacgtactaccactacttctccaagatgaag
gcgctgaaggtggaggggaaacggatcgggaaggtgcttgacaacgccatcgagacggag
aagatgatcgagaagtacgagagtctggcctctgggttgctggagtggatccagcagacc
atcatcatcctcaacaacaggaagttcgccaactctttggtgggcgtccagcaacagctg
caggccttcaacacctaccgcacggtggagaagccccccaagttcaccgagaagggaaac
ctggaggtcctcctcttcaccatccagagcaagatgagggccaacaaccagaaagtgtac
atgccacgggagggaaagctcatctcagacatcaacaaggcgtgggagcgtctggagaag
gcggagcatgagcgtgagctggctctgaggatggagctgattcgtcaggagaagctggag
cagctggcccggcgcttcgaccgcaaggcggcgatgagggagacctggcttagtgagaac
cagcggctggtgtcccaggacaacttcggcttcgacctgcaggccgtcgaggcggccacc
aagaagcacgaggctatcgagacggacatcgcggcgtacgaggagcgtgtgcaggccgtg
gtggcggtgaccaccgagctagagcgggagcgctaccatgacatcaagcgcattgcggct
cgtaaggacaacgtgatccggctgtgggagtacctgctggaactgctgaaggcccgccga
cagcggctggaggtgaacttgggcctgcagagagtcttccaggagatgctgtacataatg
gactggatggacgagatgaagatgctgcttctgtcccaggattatgggaagcaccttctg
ggcgtggaggacctcctacagaagcacgcgctggtggaggcggacatcgccatccaggcc
gacagagtgaaggccgtctccagcaacgccaacaagtactccatcacggacggcggatac
aaaccctgcgacccgcgggtcatccaggaccgggtggcccaccttgagttctgctaccag
gagttgacccagctggctgccgagcgccgtgcccgcctggaggagtctcgccgcctttgg
aagtttttctgggaaatggcggaagaggagggctggatccgggagaaggagcagatcctg
tcctcggtggagcgggggagggacttgacgggggcgctgcgcctcctgagtcagcagcgc
gccctggaggacgaaatgagtggccgggccggccacctgcagcacactgtcacggagggc
cgggccatgctgcaggtcgggcacttcggctcggaaaagattcaggaaaggatcagtgac
ctgcagtcccagtgggcggggctagagcagcacgccgctgcaacccgcaggaggctggag
caagcgctggccctgcaccagttccaggcggacgcggacgacgtggatgcatggacgctg
gatgcggttcgcatcgtttccagtgcggagacgggccacgacgagttctccacccaggcg
ctggtccggaagcacaaagacaccgccgcagaggtcgccagctaccgcccggtcattgac
gcgttgcacgagcaggccgccacgctgccagaggaggaggcggagtcagaggaggttcgc
gggcggctggctggcattgaggagcgctacagggaggtggcggagctgaccaaactgagg
aaggaggcgctgcaggacgctctggcgcgctacaagatgttcagcgaggccgacgcctgc
caggtgtgggtggaagagaaggagcagtggcttaacggcacggagatcccagagaagctg
gaagacctggaggtggtccagcaccggtttgagagtctggagccagagatgaacaaccag
gcgtcccgcgttgcggtggtgaaccagatcgcccggcagctgatgcacagcggttctccg
ggggatgacatcaaggcccagcaggacaagctcaacaacaggtggggttcgttccgggat
ctcctggaccagaagaaggaggcgctgaactctgccctgggggtccagaactaccacctg
gactgcaacgagaccaagtcttggatcaaagagaagaccaaagtgattgaatccactcag
gagctgggcaatgacctgacgggcgtcatggctttgcagcgcaagctgaccagcatggag
cgagacctggcggccatcgaggacaagctgggcgacctccggggcgaggcccagcggctg
gcggaggagcacccggaccaggccagggccatcacgggccgtctggcggagatcacggcg
gtgtgggaggagatgaaggactcgctgaagaaccgggaggagtctctgggcgaagcccgg
aaactgcagcagttcctgcgagatctggacgacttccagtcctggctgtcccgcactcag
accgccgtggcgtctgaggacatgcctaacacgctggccgaggccgagaagctgatggct
cagcaccagggcatcaagaacgagatcctgaactacgaggaggactaccagaagatgcgg
gacatgggggacatggtgacgcgtggccagacggatgcgcagtacatgttcttgcagcag
cggctgcaggcgctcgacaccggctggaatgagctgcacaagatgtgggagaaccggcag
agtctgctgtctcagtcacacgcctaccagctgttcctgagggacaccaagcaggccgag
gccttcctcaacaaccaggaatacgtcctggcccacacggagatgccccccactctggag
ggcgccgaggctgccatcaaaaagcaggaaggcttcatgaccaccatggatgccaacgaa
gacaagatcaacggcgtgatggaagccggccggcggctggccagcgacggaaacatcaac
gccgagaagattaaggagaaggtggcctccatcgatgacaggcacaagaagaacagggag
gctgctgtggagctgctgatcagactgaaggacaaccgagacctgcagaagttcctccag
gactgtcaggagttatctctgtggatcagcgagaagatgctgacggctcaggacctcacc
tacgacgaggccaggaacctgcacagcaagtggctgaagcaccaggccttcatggccgag
ctgcagtccaacaaggagtggctggacaagatccagaaggacggggctctgctggtgtcg
gagaagccggaaaccgaggtggtggtgaaggagaaactcggagcgctccacacgatgtgg
gaggagctagagtccaccacgcagaccaaagctcagtgtctattcgatgccaacaaagcg
gagctgttctctcagagctgcaccgacctggacaagtggctggggggtctggagggtcag
atccagtccgacgactacggcaaagacctgacctccgtcaacattctgctgaagaagcag
cagatgctggagaaccaggtggaggtgcgtcaaagggaggtggtggagttgcagagccag
gtgaaggcgctcggtcaggaggcgaaggacacggacgaggtggacgggcggaggcaggtg
gtggagaagaagttccaggagctgctggagccgctcagactgcgccgccacttgctggtg
gcgtccagagaagtccaccagttcaaccgggatgtggaagacgagatcctgtgggctcag
gagaggattcccgtggccacctccaccaaccacggatacaacctgcagacggtgcagcag
ctcatgaagaagaaccagacgctgcagaaggaactgcagggccaccagcctcgcatcgac
gacatactggagcgcagccgcagcctgctccaggaccaggcctccggctccgaggggatc
caccggcgccttgccgagctgcaggagctgtgggggcggctgagggaggaggggcagcgg
cgccacgcccggctgcaggaggcccacaaggcgcagcagtactactttgatgccgccgag
gccgaagcctggatgagcgagcaggagctttacatgatgtctgaggagaaggccaaggac
gagcagagcgccatcaccatgctgaagaagcaccagattatggagcaggccgtggaggac
tacgcagagaccgtccaccagctgtccaagaccagcagaggcctggtggcggacgaacac
cccgacagcgagcggatcggcatgcggcagtctcaggtggataagctgtacgccggcctg
aaggacctgtcagaggagaggcggagcaaactggaggagaggctccgcctcttccagctg
aaccgagaggtcgacgacctggagcagtggatagcggagcgggaggtggtggccgggtcg
cacgagctgggtcaggactacgagcatgtgacgatgctgcaggagcgcttccgggagttt
gcgcgggacacgggcaacatcgggcaggaacgcgtggatgccgtcaaccgcctcgcagat
gagctgatcaacgccggacacggcgacgccgccacggtggcggagtggaaggacgggctg
aacgaggcctgggccgacctgctagagctcatcgacacccggacgcagatcctcgccgcc
tccttcgagctccacaagttctaccacgacgccaaggagatcctggcgcgcatcgcagac
aagcagaagaagctgccggaggaaattggccgcgaccagaacacagtggagatgctgcag
aggatgcacaccaccttcgagcgggacatccaggcgctcggagcacaggtgaggcagctg
caggaagacgccgtccgcctacagtctgcgtacgccggagacaaggcagacgacatccag
cgtaaagacggcgaggtcctggaggcgtggaggatcctcctggaggcctgcgactgccgc
cggttacgcctgctagacacgggcgacaagtttcgattcttcagcatggtgcgcgacctg
ctgctctggatggacgacgtgatccggctcatcgaggcccaggagaaccccagagacgtt
tcctctgtggagctgctgatgaacaaccatcagggcatcaaagccgagattgacgcgcgc
aatgacagcttcaccgcctgcatcgagctcggcaaggcgctgctcgcacgcaagcactac
gcatcagaggagatcaaagagaagctgctccagttgaccgacaaacggaaggagatgatt
gacaagtgggaggatcggtgggagtggcttcgcctcatcctggaggtgcatcagttctcc
agagacgcgggtgtggccgaggcctggctgctgggtcaggagccgtacctgtccagcagg
gaggtggggcaaagcgtggacgaggtggagaagctcatcaagcggcacgaagccttcgag
aagtccgccgccacctgggaggaacgcttctctgcgctggagagactgaccactctggaa
ctgctggaggtcaggaggcagcaggaggagctggagcgcagcaggagacctccttctcca
gagacgctccaccaggaggaggtccagcaggagcagagtgttgtcactcagaacggactc
ccctcagacgaggactctccgcggaacgggctggaaggtgggggcctcgtgaacggtctc
gtggagcgcagctccaaggagccaagccccaccccctcgccatcgttggccaagaagaat
aaaaacagccagtcatccacgctgcccctcaagagccaggactccccagtgcagatggag
gggctcctgcaccgcaagcatgagtgggaggggcacagcaaaaaggcctccaacaggtca
tggcacaacgtctactgcgtcatctgccaccaggagatgagtttctataaggacagcaag
gcagcggcccagggggcggcgtaccacaaccagccccccctcaacctgaaggacgccagc
tgcgacatcgcctcagattataagaaaaagaaacacgtcttcaagctcagagtggcagat
ggaaacgagtatctgttccaagccaaagacgaggatgaaatgagctcctggatccaggtc
atcctaaacgccgccgcacctgaactcaccgacactcagagcagccaccccagcacgccg
gtctctgggcgcgctcagacgctgccagccaccatcacgctcaccaccgagtcgagcccc
ggcaagaaggagaagcgcttcagcctgttcagcaagaagaagcagtga
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integrated database retrieval system
