Oryzias melastigma (Indian medaka): 112143548
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Entry
112143548 CDS
T07439
Symbol
nod1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1 isoform X1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04621
NOD-like receptor signaling pathway
oml05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
112143548 (nod1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112143548 (nod1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oml04054
]
112143548 (nod1)
Pattern recognition receptors [BR:
oml04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
112143548 (nod1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
CARD
LRR_6
WHD_NOD2
LRR_4
AAA_16
NPHP3_N
AAA_22
ATPase_2
ABC_tran
PIF1
AAA_25
NB-ARC
Motif
Other DBs
NCBI-GeneID:
112143548
NCBI-ProteinID:
XP_024123370
Ensembl:
ENSOMEG00000010177
LinkDB
All DBs
Position
LG16:complement(17053755..17071754)
Genome browser
AA seq
938 aa
AA seq
DB search
MEESSVPCLHLLTLHRELLVSTITSIQCLLHNLLLNGFFCQEDVEIVQRIPTKPDKVRKV
LELVQCKGEEACEFFLYVIYKVCDAYRDLQPWLEDINYKPSGSVIGTEVVNSDPISRYSQ
KLRHEISRDTSFIMSYGQQEETRLEDLYTDTVMELLNDTNESLGFLENLNQLLGDDAVFN
PQGEVIYVMGDAGVGKSILLQKFANLWSKKELKTDALFFFKFRCRMFSIFKDAEEISLRN
LLFKYNCYPDHDPDNEVFDYILRFPEKVVFTFDGFDEIQEDVDILKIPEVVSPEANANAL
QLLMSLLSGKLLKGSNKVMTARTGIEIQSRVIRKKVALRGFSPDHLKAYINLHFKEQEHR
ELVSVQLDASPHLCGLCSTPLFCWIVFKSFRHLQTMHDDFHLPDTCITLTNIFLLLCEVF
LSRLASPAASSLKKSTRCTSETFRAGLRPLTAFSKLALQGLERGSFICSQEEISECGLTE
EDLSLGFLRPVSDYDSSGGPANFEFIHITLQSFLAAFALVLEEQTSTDFILKFFSECSWR
QEVSCTPLPFCIGRPVNLSLNKPFSTNEHFLFTNLFLCGLLAKSQLGLMGHLVCPALLRR
KRATLKSYLSTVVRSHMQGLPTYKGDDGTKVHVLPNFLWMVRCIFETGSRQIAQMTAKGI
TPYFIKLGYCNVYSGDCTALNFVLQHHRTLLRLDMDNNNISDYGVKQLRPSFSRMTVVRL
CVNRLSDSSIEILAEELCKHKVVEILGLYNNNITDVGAKLVAHIVEECPKLAVLKIGKNK
ITGVGGRYLAIAIQKSRSIFDVGMWGNSIGDEGAEAFAKALRNHPTLTNLSLAANGITSR
GGRSLAEALKENTVLRIFWLVENQLGDDAAPTLAELVRANTGLSHLWLINNLLTAVGTRQ
LAEALAENTKLKEICVKGNQISKEEEEEFLLERRLRFH
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatccagtgtcccgtgccttcacctgctgaccctccacagagagctgctggtg
tccacgatcactagcatccagtgcctgctacacaacctgctgctgaatggctttttctgc
caggaagatgtggagattgttcagcgaatccccaccaaaccagacaaggtgcgtaaagtc
ctggagctggtgcagtgtaagggggaggaggcctgcgagttcttcctctatgtcatttac
aaagtgtgtgatgcataccgagacctgcagccatggctggaggacatcaactacaaacca
agtggcagtgtcattgggacagaagtggttaacagcgaccccatcagcaggtacagccag
aagctgcggcacgagatcagccgggacaccagcttcatcatgtcgtatgggcagcaggag
gagacccggctagaagacctctacacggacacagtgatggagctactaaacgacactaat
gagagcctgggcttcttggagaacctgaaccagctcttgggagatgatgcggtcttcaat
ccgcagggggaagtcatttatgtgatgggagatgctggagtgggaaagtccatcctcctg
caaaagttcgcgaacctctggtccaagaaggagctgaagaccgatgccctcttctttttc
aagtttcgctgcaggatgttcagcatcttcaaggatgcagaggagatctccctcaggaac
cttttgttcaaatataactgttacccagaccacgacccagacaacgaagtctttgattac
atcctgcgctttcctgagaaagttgttttcacttttgatggctttgatgaaatacaggag
gatgtggacattctgaaaattcctgaagtggtgtcaccagaagccaatgccaacgccctt
cagctgctcatgagccttctgagtgggaagctgctgaagggctccaacaaggtgatgacg
gcgcgaacagggattgagatccaaagtagggtgatccggaagaaggtagctctccgaggg
ttctctccagaccacctgaaggcttacatcaatcttcacttcaaggagcaggagcatcga
gagcttgtgtcagttcagctggatgccagcccccacctctgcggcctgtgctccaccccc
ctcttctgttggatcgtcttcaagagcttcaggcacctgcagaccatgcacgatgacttt
cacctgcctgacacctgcatcacgctgacaaacatcttcctgctgctgtgtgaggtcttc
ctcagccgcttggcctcaccggctgcctcctccctgaagaaaagcactcggtgcacctca
gaaaccttcagagccggactcagacccctcaccgccttttcaaaactggccctgcagggc
ttggagcgcggcagctttatctgcagccaggaggagatcagtgagtgtggtctgacagag
gaggacttgtctttggggttcctgagacctgtcagtgactatgactccagcggaggccct
gcgaactttgaattcattcacatcaccctgcagtcgttcctggcagcgtttgctcttgtg
ctggaagaacagacctctacagacttcatcctcaagttcttcagcgagtgcagctggagg
caagaggtgtcttgcacgcccttgccattctgcatcggccgccctgtgaatttgagcctg
aacaaaccattttccaccaatgagcacttcctgttcaccaatctgttcttgtgtgggctt
ctggcaaagtctcagctaggcttgatgggacatctggtatgccctgctttactgcggagg
aaacgagctacactgaagtcttacctgtccacggtggtccggagccacatgcagggctta
cccacttacaaaggggatgacggcaccaaggttcacgttctgcccaactttctctggatg
gtgcggtgcatctttgagacgggcagcagacagattgctcagatgacagccaaaggcatc
acgccgtacttcatcaagctaggatactgtaacgtgtactcgggcgactgtaccgccctc
aactttgtcctgcagcaccaccggacgctcctgcggctcgacatggacaacaacaacatc
agtgactatggagtgaagcagctccggccgtccttcagcaggatgaccgtggtgcggttg
tgcgttaacaggctgtcagacagcagcatagagattttggctgaagaactgtgcaagcac
aaagttgtggaaattttggggctttacaacaataacatcacagatgtgggagccaaactg
gtggctcacatagtcgaggaatgccccaagctggcggtgctcaagattggtaaaaacaag
atcacgggcgtaggtggaagatatctggccattgccattcagaagagcaggtccattttt
gacgtggggatgtgggggaatagcattggggacgagggtgcagaggctttcgccaaagcc
ttaaggaaccaccccacactcaccaacctcagcctggcagccaatggcatcacatccaga
ggagggaggagcctggcagaggcgctgaaggagaacacggtcctcagaatattctggttg
gtggagaaccagttgggggatgacgccgctccaaccttagctgagctggtccgagcaaac
acaggtctaagccacctctggttgatcaacaacctgctgacggcggtggggacgcggcag
ctcgcagaggccctcgctgagaacacaaagcttaaggagatctgtgtaaaggggaaccag
atctctaaggaggaggaggaggagtttcttctggagcggcggctgcgttttcactga
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integrated database retrieval system
