Oryzias melastigma (Indian medaka): 112143620
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Entry
112143620 CDS
T07439
Symbol
cicb
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112143620 (cicb)
Transcription factors [BR:
oml03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112143620 (cicb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
112143620
NCBI-ProteinID:
XP_024123486
LinkDB
All DBs
Position
LG16:complement(5289629..5322411)
Genome browser
AA seq
2700 aa
AA seq
DB search
MRPLKKNRGRSPSLTRGRGGRRKAGSHTLHEKDSKKVKKEISVKAAQHTTNIPLKRKHSP
PTVPNSIEEPITLSNINTKEEPTKLRNHVESLKNEVKKNDEGTPKDKTVGTNGNSTLPTT
SVASPTSLPALLTVAAQPQATNHSPSIGSVSSRKTATFKARIPKKKYTYEHFANNASVMT
SIPTSSPALIHNNYCNINSKVSNTANTNDENFKNSKDFSSDVNQSFNFSICRSTNSNTIC
GITSKTSSSSSCAGSYSTYINSKSNNCSGNQMSVLTVDSKATDANNIVFVDDKTLRTAHV
QEKEAQDGENAADGTPNSVRSSSTDTASEHSADLDVIEATGPSAHILSPLHNAQQKEMSL
SEGLASTLAKGMKNQRVLARQRNRTIEAVSNGDGCRPSSVFSPGLVRRVSGDTVEIALQA
EDTLVKYPFHGGPMTSSPQTERIVDFILDTPPPGTAPVAVGTRVCVPFGGEEGGCLFYRE
GIVARVDPHPGVSFPYQVLLNEESKSRRAGEETEKSKVNGKGVWVSRQSLRLLTPPWEVS
HLDGGGAKEREREREREERERREEMEVEREVCQLSIGMGVLGGHEFSHEGATGVHSFGAP
SSSVASSVVVITDHECGDGFSERQREKKMVTPDEDVEVSRFNRVHTAGPKPNPPHPRNVT
PKASAHPNSSPHLSVVGGLGPPNRSTIPSPQPTPSPVLQISEISSIQTSLPPLKTTPTQT
PTPTSSVGSSSASSRCRTPLSLAQQKYKKGDVVCTPNGIRKKFNGKQWRRLCSREGCMKE
SQRRGYCSRHLSMRTKEMEAAGGEKGAGGSSSGTVTPSDLLRQASSEFEWDETSRESSEI
SSRGDSRPRLVLPSLLPHELSSRFDFDECEAATMLVSLGSSRSGTPSFSPISNQSPFSPA
PSPSPSPLFGFRPANFSPITASPVVQHRRHRQPSGTGGGGGGGGGSSKVSISGGSAEREK
HPSGIHSSFHNNLTFTVPMSPSKRKPEAPPPPTLPTHHHDYTPKTELEQVDLNNSFRVLS
PQTPVSHSRSHTPTFSRPKGGTTPSSSRPSSSTAVSPPPLLVSPTPPSPLSTEGGARRVV
HVSQQTLRDSPVIVRNPEVPLAKFTETPMGRGGGADEGGTDSSSSQDVVPTPLISQPVSG
LQVPVPINRAAAPVPNNAVLLRSPAQTLLLVSPTPSALPGFDPSAPIPQTLSVTVSTTVS
ATATTSTDTSAEREDNRGSGFGTGVQQPVPCHPSPTALLPLILPAESLHPVPRKDIIMGR
PGTVWTNVEPRSVPVFPWHSLVPFLAPTQSDASPQPEEGQHPVNHPQAAILKTECQGVAS
LSQEPTEAPPTVERVPPTRPLPSSYEPLPEKEKGDAERERPDSETESDVDDPFLPGVVPE
PPITTSPVKRRTQSLSALPKDGDKNSPGKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQ
DNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEGRGVP
GAKDIRERSMSESTEPHSVELKGVGPGLVGVSERSTAEEHVGQLTRPRAFSQSAMHSLGD
RGNTQALAELAQMCGESGSQFSSHAPSLSQNQRGVSEDMTSDDERMVICEEEGDDDVIED
PYPSSSIDLKCKERVSDSDSENASGDEGDRKRVFAPVICSSSSTSSSHHTPHGRSVSLSS
YPSSKRYDEGRSGGGGLSDHRRKERGEAEGKDTFVVEGGRGVQAPPLSLSSGQSVISTSL
AGGPPPSSAGSLGTNPLLGIGTVRVASTAVTNVMRPVISSPLPIASKPREGGSSSSPHPP
ERKSLTPQQQPQLLISPGVGGGAAATGGGYYSSSSPNPAGAGGVVTNLVLGGALPAQSAV
QLITPSPPSQLPHQQALPSTAVSATHSQSNGPLPVPLLQPQFLPASSLAPPGGKAITQVQ
YILPSLPASTHPKSPPQQLSQPTSIFNLPTAPPTHVSLSNGKQQGASLPAGAVGVVSSGS
RVQTQSPVLQGKMLVPMATVRTAPAPAQQFPIVTPPLPVQNGAQSGSKIIQIAPMPVVQS
QLPQGGAVHPASAFPVTVGTAAVVAPGSAPSQTVLLPQAPTRITYVQSTPGISSTLPLVS
TTTGSSSSQQALPVPGSAYVPSPLATLGFTAIASPGQTLVQPLIAGQPPLLAAAQTPQPP
TSAPAAGSGSQIVTAIYPPSPSVTMATGVVSMAPVPSSVAYTVSSSSASPHILPKHPPTL
SAVTPHPQPHPDRQVDRQLPPDRPAERQNDRQAELPGHFERQLDRQLHTSSSGSSVAPPG
GSAVSVRPCSPPLQIQIPGNPPGTPKLLQPPVRNPLKVKAAIATIPVGSYDGGGRGKERD
KEKEREKEAGRETASNSHFSFDPEPLRQTGSPSAPPTEEPPSLDRSLEGSSTTDSTDARN
RESITTKEAAWKEQESLPSPPLPPPSTTEPSLPPPQTDKDTLTPKKIKARPPPLKKTFDS
VDKTGRVLSEVYFEERFAELPEFRPEEVLPSPTLQSLATSPRAILGSYRRKRKNSTDLDS
ATDEQLSPKRKSRRRSSCSSEPNTPKSAAKCEGDIFTFDRAAPDGEDILAELEFEKVPYS
SLRRTLDQRRALVMQLFQEQGFFPSAQATAAFQTRYSDIFPTKVCLQLKIREVRQKIMQT
ATPTDGPGLGPSDSSCSLPGPSGSHSGEGPGRGGDLQDDEAEQGAQASPEKPRDPHESAR
NT seq
8103 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgttgaagaaaaacaggggacgctcaccttcgttaaccagagggagaggaggg
aggaggaaggcgggatcacacacactccatgaaaaagactccaaaaaagtcaagaaggag
atatctgtcaaagctgcacagcacacaactaacattcccttgaagcgaaaacactcccca
cccaccgtccccaactctattgaagagcctatcacgttaagcaatataaacacaaaggag
gagcctacgaaactaaggaaccacgtggagtcgcttaagaatgaggtaaaaaaaaatgac
gaggggacgccaaaggacaaaacagtgggcacaaatggaaatagtactttacccacaact
tctgtagcatctcctacctccctgccagcgctgctcactgtagccgcgcaacctcaagcc
accaaccacagtcccagcataggctcagtctccagtagaaaaacggccacattcaaggct
cgaatacccaagaaaaaatacacttatgagcactttgccaacaatgcaagtgtcatgact
agcattcctacctccagccctgcactcatacataacaactactgcaatatcaacagtaaa
gttagcaacactgcaaatactaatgacgagaattttaagaacagtaaggattttagttct
gatgttaaccaaagctttaattttagcatctgcagaagtactaacagtaatactatatgt
ggaataaccagtaaaactagcagtagtagtagttgtgcggggagctacagcacctatatt
aatagcaaaagtaataattgctcaggtaatcaaatgtcagtgctaactgtggacagtaaa
gctacagatgcaaacaatatagtttttgtggatgataaaaccctcaggactgcacatgtc
caggaaaaggaggcccaggatggggagaacgcagcagatgggacccctaactcagtgcgc
tcctcctccactgatacagccagtgagcactctgctgacctggatgtaatagaagcaaca
ggaccaagcgctcatatcctttctccacttcataatgcccagcagaaagaaatgagcctg
tcagaaggactagctagtactctggctaaagggatgaagaaccagagggtgttggctcgc
caaagaaacaggactatagaggctgtcagtaatggagacggatgccgcccatcttcagtg
ttcagcccagggctggtgcgaagggtgagtggagatactgtggaaattgccctccaagca
gaagacacccttgttaaatacccttttcatggtggaccgatgacgtcatccccacagact
gaaaggattgtggatttcattttggacacccccccacccggcacggcccctgtggctgtc
gggaccagagtgtgtgtgccgtttggcggagaggaagggggttgtcttttttacagagag
ggaattgtagcccgggtagacccccaccccggtgtctcgtttccgtaccaggtgctcctg
aatgaagaaagtaaaagcagaagggcgggagaagagacggagaaaagcaaagtcaacgga
aaaggtgtgtgggtgtctcgacaaagcctgcgactgctcactcctccctgggaagtctca
catttagatggtgggggggcaaaggagagggagcgcgagagggaaagggaggagagggag
cggcgggaggagatggaggtagagagagaggtctgccagttgagtattgggatgggggtg
ctagggggtcatgagttctcccatgaaggggctacaggagtgcactcttttggagcaccc
agctcctccgttgcatcgagcgttgtggtcatcacggaccacgaatgtggagatggattc
tctgaacgacagagggagaagaagatggtcactccagacgaagacgttgaggtatctcgt
tttaacagggtccacacagctggtccaaaacctaatccccctcatcctagaaatgttacc
cccaaagctagtgcccaccccaactcctccccccacctttctgtagtcggaggtcttgga
ccaccaaatcgttccaccatcccaagtcctcagccaacaccttctcctgtcctacagatc
tccgaaattagcagtattcagacaagcctacctccactaaaaaccactcccactcagacc
cccacacccacttctagtgttgggtcctcttctgcctcctctcgctgccggactcctctt
tcattggctcaacagaaatacaaaaagggggacgtggtgtgcacgcctaatgggatccgt
aagaagttcaatgggaagcagtggaggaggctttgctccagggagggctgcatgaaagaa
tcccagcgccgcgggtactgctcccgacacttgtccatgcgaaccaaggagatggaggca
gcaggtggagagaagggagcagggggcagcagctcggggacggtcaccccctctgacctt
ctgcggcaagccagcagcgagtttgagtgggacgagacttccagggagagcagtgagatc
agcagcagaggagactccaggccgcgcctggtcctcccctccctccttccccatgaactg
tcgtcacgcttcgactttgatgagtgtgaggccgccaccatgctcgtgtcgttagggagc
tcccgctccgggaccccctccttctcccccatctccaaccagtcacccttttcccctgcc
ccctctccttcaccctccccactgtttggtttcaggccggccaacttctcccctattact
gcctccccagtcgtgcaacaccgaaggcaccggcagcccagcggcacgggaggaggagga
gggggagggggcgggagcagcaaagtttcaatctcaggtggaagtgcagaaagggaaaaa
cacccttcaggtatccactcctccttccacaacaacttaacatttaccgtcccaatgagc
cccagcaaaagaaaaccagaggcacccccacccccaacgcttcccacgcaccaccacgac
tacacccccaaaacagagctggagcaggtggacctcaacaactcttttagggtgttgtcc
ccccaaacgcccgtgtcacattcccgcagtcacacacccactttctcccggcccaaagga
ggcactaccccgtcctctagcaggccttcatcctctacagctgtctcccctcctcctctg
ctagtgtccccaactcctccttctcccctcagtacagaagggggggcccgtcgtgtcgtc
catgtttctcaacagactttgcgggactcccctgtcattgtaagaaatcccgaagtccct
ttagcaaaatttacagagactccaatgggaagaggaggaggtgcagacgaagggggaaca
gacagctcctcatctcaagacgttgtcccaaccccccttatttctcagccagtttctggc
ctccaggttccggtcccaattaaccgcgctgcagcccccgtaccgaacaatgccgtcctc
ctgcgcagcccggctcaaacactcctgctggtgtccccgacaccctccgccttgccgggg
tttgacccctctgcccccatcccacagacactatcagttacagtaagcacaacagtctca
gctactgccaccaccagcacggacacttctgcagaaagagaggacaacagaggcagtggg
tttgggactggagttcagcagccggttccctgtcatccgtctcctacagctctgcttccc
ctgatcctgcctgcagaaagtctgcaccccgtcccccggaaggacatcatcatgggacgt
cctggtacagtgtggaccaatgtagagccccgctcagttccagtcttcccttggcattca
ttggttccttttctggcaccgacccaatcagatgcttcccctcagccagaagagggccag
cacccagtcaaccacccccaagctgccatcctaaagacagaatgtcagggggtagcatcg
ctttcacaggagcccacagaggcacctcccactgtagaaagagttcctccaacccggcct
ctcccttcctcttatgagccgcttccagagaaggagaaaggagatgcagagagagagagg
cccgacagtgaaactgagagtgatgtggacgaccctttcttaccaggagttgtacctgag
ccgcccatcaccacatcaccagttaagaggcgtacccagtctctcagtgcgctacccaaa
gatggagataagaacagtccaggaaagagagaaaaagaccacatccgacgaccaatgaat
gcattcatgatttttagcaagcgtcatcgagccttagtgcaccagcggcacccgaaccag
gacaataggacggttagcaagatccttggggagtggtggtacgctctgggaccaaaagag
aagcagaagtaccacgacttagccttccaggttaaagaagcccattttaaagcccaccca
gactggaaatggtgtaacaaagacaggaagaagtccagctctgaaggccgtggagtccct
ggggctaaagacatcagagagagaagcatgtctgaatccacagagcctcattcggtggag
ctgaagggtgtgggtccaggtttggtgggtgtttctgagaggagcacagcagaagagcat
gttggccagctcactcgtcctagagccttctctcaaagtgccatgcacagtctgggtgac
aggggtaacacccaggccctggcagaactagcacagatgtgtggtgaaagtggcagtcag
ttttcaagccatgccccttcactctcacagaaccagcggggcgtcagtgaggacatgacc
agcgacgatgagcgcatggtcatctgcgaggaggagggggacgatgatgtcatcgaggac
ccttatcctagcagctccatagatctgaaatgtaaggagcgagtgtctgacagcgacagt
gagaacgcttcaggagatgaaggcgatcggaagagggtttttgccccagtcatctgctcg
tcttcctccacttcttcatcgcatcacaccccccatggcaggagcgtctcgctgtcctct
tacccctcaagcaaacgctatgatgaggggaggtctggagggggtgggctttcagaccac
aggaggaaggagagaggagaggcagaaggaaaggacacttttgtggttgagggtggcaga
ggtgtgcaggcccctcccctctccctctcctctggtcagtcagtcatttctacatctcta
gctggagggcccccgccctcgtccgcaggctctttgggaacaaaccctctcctgggtatt
gggactgtgcgggtggcgtccacagcagtgaccaacgtgatgcgtcctgtaatcagctcg
cccctccccattgccagcaaacctagagagggaggctcctcgtccagcccccacccccct
gagaggaagtccctgactccccaacagcagccccaacttctgatcagtccaggggttggg
ggcggggctgcagccacagggggtgggtactactcttcatcttcgcccaatccagcgggt
gcaggcggtgtggtcactaacttagtgttgggaggagctctgcctgcacagtcagctgtc
cagctcattaccccctcccccccttcccagctaccgcatcagcaagccctcccctccacc
gctgtttcagccacacatagccaaagcaacgggcccctgcctgtgcctctgcttcagccc
cagttccttcctgcttcctccctggctccccctgggggtaaggccatcacacaagttcaa
tacattctgcccagtttaccagccagcacccaccccaagagcccgcctcagcagctcagc
cagccaaccagtatcttcaacttacccacagcacccccgacacatgtgtcattgtccaat
ggaaagcagcagggtgcgagtctaccagcgggagcggtgggtgtggtcagttctgggtct
agagtgcaaacgcagtctccagtgctccagggtaaaatgctggttcccatggcaacagta
aggactgcaccagcccctgcccagcagtttcccattgtgactccacctcttcctgtacag
aatggtgctcagtctggaagcaagatcatccagattgctcctatgccagtggtccagtcg
cagctccctcagggaggagcagtgcatcctgccagtgctttcccggttacagtgggcaca
gccgctgtggtggcacctggatccgccccctcccagacggtgctgctgccacaagcacct
actagaatcacctatgtccagtccactcctgggatctcatccactctgcctttagtctcc
acgacaaccggctcttcctcgtctcagcaagctctgcccgtccctggatctgcatatgtc
ccatcgccgttagcaaccctcgggttcacggccattgcttcacctggacagacactcgtt
cagccgctaattgctggccagccaccgcttctagcagccgctcagaccccacagcccccc
acctcagcccccgctgctggttctgggagccagatagtcacagccatctaccctccttca
ccaagtgtcaccatggcaacaggggttgtttccatggcaccggtgccctcgagtgtggcc
tacaccgtctccagctcaagtgcttccccacacatcttgcctaaacacccaccaaccctc
agtgctgtcacacctcatccacagccccatccggacagacaggtggaccggcagctgcct
ccggacaggcccgccgagcgacaaaatgacaggcaggctgaactgccgggacactttgag
agacagttagacaggcagttgcatacctccagcagtggcagctcagtggcaccccctggt
ggctcagcagtgtccgtcaggccctgcagtcctccccttcaaatccaaattcctggcaac
ccaccaggtacgcccaagctgttacagcctccggtcaggaaccctctcaaagtaaaggca
gccatcgccaccatcccagtggggagctacgatggaggaggcaggggaaaagagcgtgac
aaggagaaggagcgggagaaggaggcgggcagggaaactgccagcaacagtcatttctct
tttgatcctgagccgctgaggcagacgggctctccgtcagcccctcccacagaggagccc
ccgtctttagatcgatctctggagggctccagtacgacggactctaccgacgcccggaac
agagaaagcataaccaccaaagaggctgcatggaaggagcaggagtccctcccctcccct
cctctcccccctccatcaaccacagagccctctttaccacctccacagactgacaaagac
actctgacgcccaaaaagattaaagctcgtcccccaccactgaagaagaccttcgactct
gtggacaagactggcagggttctttcagaggtatactttgaggaacgcttcgctgagctg
ccagagtttcgaccagaggaagttttgccgtcgccgaccttgcaaagcctggccacttcc
ccccgtgccatcctgggaagctaccgccgaaagaggaagaactccacagatttggattct
gccaccgatgagcagctatcgccgaagagaaaaagtcggcggcgatcaagctgcagctcg
gaaccaaacacgcctaaaagtgccgctaagtgtgagggggacatcttcacgtttgacaga
gcagcccctgatggagaagacattctggctgaactggagtttgagaaagtgccgtactcc
tccctgaggcgaactctggatcagaggagagctcttgtcatgcagctgttccaggagcag
ggcttcttcccatcagctcaggccactgcagctttccagacgagatactccgacattttt
cccactaaggtgtgcttgcagctgaagatcagggaggtccggcagaagatcatgcagaca
gcgactcccaccgacggccccggcttggggccctcggactcctcgtgctctcttcccgga
ccgtccggctcccactcgggggagggacctgggagaggtggagacctgcaggatgacgag
gctgaacagggagcacaggcgagcccagagaagcctcgtgatccacacgagtctgctaga
tga
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integrated database retrieval system
