Oryzias melastigma (Indian medaka): 112143899
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Entry
112143899 CDS
T07439
Name
(RefSeq) terminal nucleotidyltransferase 4A
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112143899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112143899
03016 Transfer RNA biogenesis [BR:
oml03016
]
112143899
Enzymes [BR:
oml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
112143899
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
112143899
Transfer RNA biogenesis [BR:
oml03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
112143899
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_assoc
NTP_transf_2
Polbeta
TUTase
Motif
Other DBs
NCBI-GeneID:
112143899
NCBI-ProteinID:
XP_024123909
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Position
LG16:complement(13886030..13896054)
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AA seq
559 aa
AA seq
DB search
MSPKPEEEAMRRDVVNKIEGVIKDLWPTARVEIFGSFSTGLYLPTSDIDLVVFGKWEHPP
LQELEQALKKCNVAGPFPVKVLDKASVPIIKLTDQESKVKVDISFNVETAVKAAQFIKSY
LKKYSVLPPLIFVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDTRRTNINLG
ILLIEFFELYGHDFNYMKTGIRVKNGGAYLSKEEMLKTMGNGNRPSMLCIEDPVQPGNDV
CRNSYGVLQVKQVFDFAYMALSHGVSPLTRGYPIKEYDSILGRIIKISPEVLAYREWTIK
KWGGKHYGKLDNHDLEDCEQGLVRLMLAEDQRDTSSPLSADSLSPSPVFLPSPQHPSSSS
SACSPSSSPSGSDMESDSPQSSITATHLHPVILGSVHSTIQMSAEQRTPHSAEFIHSPHQ
MSFPECVAIPSFSDCQFYHENPPSIGGVHRRTALISQHMNSTSPFLSPLHHPQVGEQHNC
AYATRSNSQGSNEPPKSGLKHNHQVSSLQGQSFLQNNFSPQRKFASQSQSVASGFRSQHN
RSTWRRRKRDSLPALNQSG
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtctccaaaacccgaagaagaggccatgaggagggacgtagtgaacaaaatcgaggga
gttatcaaggatttgtggcctacagcgcgggtggagatttttggcagcttcagtactggc
ctgtatcttccgacaagtgacattgacctggtagtgtttggaaagtgggagcatccccca
ctgcaggaactcgaacaagcgctgaaaaagtgtaacgttgccggcccctttcccgtcaaa
gttctcgacaaagcctcggtgccaatcatcaagcttactgaccaagaatccaaggtgaaa
gtagacatcagctttaatgtggagactgcagtcaaagcagcacagttcatcaaaagttac
cttaagaagtactccgttcttcccccgcttatcttcgttctgaagcagtttctgctgcag
agagatctaaatgaagtattcactggaggcatcagctcctacagtctcatattaatggcc
atcagcttcctacagttacatcctcgcatcgacactcggaggaccaacattaacttgggc
atcctgctaatcgagttcttcgaactctatgggcacgactttaactacatgaagaccggc
attcgggtgaagaatggaggagcttacctgtccaaggaagagatgcttaaaaccatgggg
aatggaaacagaccttccatgctttgcatagaagacccagtccaaccaggaaatgacgtg
tgtaggaattcgtatggagttctgcaggtgaagcaggtctttgactttgcttacatggcc
ctgagtcatggagtttcacctctgacgcgcggctaccccatcaaagaatatgacagtatt
ttagggcgaataatcaaaatcagcccagaggtgctggcctacagggaatggacaattaaa
aagtgggggggcaagcactacggaaaactggacaaccatgacttagaagactgtgaacag
ggccttgtcaggctcatgctggctgaggatcaaagagacacttcctcccctctcagtgca
gactccctctcaccttctccagtctttctgcccagccctcaacacccttcttcttcatcc
tctgcatgctcaccctcctcttccccctctggaagtgacatggagtctgattctccacaa
agtagcatcactgctactcatctccatccagtcattctgggttctgtccattccaccatt
cagatgtctgcagagcagaggaccccccattctgcagagtttatccacagcccacatcag
atgtcttttccagaatgtgttgccattccctcgttttccgattgtcagttctaccatgag
aatcctccctccattggtggtgttcaccgacgcacagctctgatctcccagcacatgaac
tctacaagtccttttctcagcccccttcaccatcctcaggtaggggagcagcacaactgc
gcctatgccaccagatccaattctcaaggttcaaacgagccaccgaaatccgggttgaag
cacaatcatcaagtcagcagcctccagggccaaagttttcttcaaaacaacttcagtccg
cagcgcaagtttgcatcccagagtcaaagtgtagcttcaggcttcagaagccagcacaac
cgcagcacctggcggcgcagaaaaagggacagccttcctgctctcaaccagagcggatga
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