KEGG   Oryzias melastigma (Indian medaka): 112143923
Entry
112143923         CDS       T07439                                 
Symbol
xrcc1
Name
(RefSeq) DNA repair protein XRCC1 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:oml00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    112143923 (xrcc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oml03400]
    112143923 (xrcc1)
DNA repair and recombination proteins [BR:oml03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     112143923 (xrcc1)
SSDB
Motif
Pfam: XRCC1_N BRCT BRCT_2 PTCB-BRCT LIG3_BRCT
Other DBs
NCBI-GeneID: 112143923
NCBI-ProteinID: XP_024123934
Ensembl: ENSOMEG00000021075
LinkDB
Position
LG16:complement(1204871..1228440)
AA seq 623 aa
MPEIKLKHVVSCTSEDNTHKADNLLSSDTYRKWKAARAGEKQTSVILQFEKEEQVHSIDI
GNEGSAFVEVLVANSSAPKTQDYEVLLVTSSFMSPTESRNGTNLNRVRFFGPSQLQKSTA
QEKWDRVKIVCSQPYNKNIAYGIAFVKFHSPPDKNDPPTSSPKLTKLGQFRIKDESPSSG
SSLQPGSLFFNRENANKSSTSPKVSPQSDKLSYAAAALQAGGGQASSSSSSSASPQPPAK
RKFEFTKERLSASGPSPSNKKSPAGSPESKTATPKAKPSPAPTPSQSTTKASSTQRSTEK
KKESKPELKPKQKTKPQSEQQVPFNKIMEGVVFVLSGFQNPFRGELREKALEMGAKYKPD
WTPDSTHLICAFANTPKYSQVKSAGGLIVRKEWVLDCHKRKQKISYKRYLMDGDESSSES
EMEVDEDSEEEVKTKFLQTPPKQERQVTPKKTPAKRDEEEEYAGSTDVEEPGAEDDESGV
DTEDELQRVENESRRKKAAAETAVNEEDPYGGSTDENTDVEAEEDHPIPELPDFLSGKRF
FLYGKFPNDERRLLLRYIVAFNGVIEDYMTDKVQFVVTSEGWHESFEDALMENGNLNFVK
PAWIYAINERQKLLPYQPYTVVP
NT seq 1872 nt   +upstreamnt  +downstreamnt
atgccagaaatcaaactcaaacacgtcgtatcctgcacctccgaagacaacactcacaaa
gcggacaacctgctgagctcagacacctacagaaagtggaaagcagccagagctggagag
aagcagacatcagtcattctgcagtttgagaaagaggaacaagtgcacagtattgatatt
ggaaatgaaggatcagcttttgttgaagtgttggtggcaaattcttcagcacccaagacc
caggactacgaggttcttctggtcacgtcttctttcatgtctccaacggagagccgtaac
ggaactaacctgaaccgtgtgcgcttctttggacccagccagctgcagaagagcacagct
caggaaaaatgggacagagtaaaaatagtttgcagccaaccatacaacaagaacatagcc
tatggaatcgcctttgttaagttccactctccgcctgacaaaaatgatcctccgacttcc
tcccctaaattgacaaagctgggacaattcagaataaaggatgagtctccttcatctggg
tccagtcttcaacccggaagtctcttctttaaccgagaaaatgcaaacaagtcgagcact
tcacctaaagtgtctcctcagagtgacaagttgagttatgctgctgctgctctgcaggca
ggtgggggccaagcgtcctcgtcctcctccagctcggcctcaccacagccgcctgcaaaa
agaaagtttgagtttaccaaagagcgactgtctgcctccggtccttctccatcaaacaaa
aaaagcccagctggttcacctgagagcaaaactgccacgcccaaagccaagccaagcccc
gcccctacccccagccaaagcaccactaaagcgtcatccacacagagatctactgagaaa
aagaaggagtctaaaccggagctcaaacccaaacaaaaaactaaaccccagagtgagcag
caggtcccgttcaacaagatcatggagggggtggtgtttgtgctcagtggcttccagaac
cccttcagaggagagctgagagaaaaggctctggagatgggggccaagtacaaacccgac
tggacgccggactcaacacatctcatctgcgccttcgccaacacccccaagtacagccag
gtgaaatcggcgggggggctcatcgtacggaaggagtgggtgttagactgccacaagagg
aaacagaagatctcctataaacgttatttgatggatggagacgagtcgagctctgaaagc
gaaatggaggtagacgaagatagcgaggaagaagtgaagacaaagtttctacagactccg
ccgaagcaggaaagacaagtcaccccgaagaaaactccagcaaagagggatgaagaggag
gagtacgctggatccactgatgtggaggaaccaggagctgaagacgatgaatccggcgtg
gacacagaggatgagctccagagggtggagaacgagagcaggaggaagaaagcagcggca
gaaacggcagtgaacgaagaggatccttacggggggtcgacagatgaaaacaccgacgtt
gaagctgaagaggatcatcccatccccgagctaccagatttcctcagtggaaagcgcttt
ttcctgtacggaaaattccccaacgatgagaggcgacttctgttgcggtacatcgttgcc
tttaatggggtgattgaggactacatgacagataaagtgcagtttgtggtgaccagtgaa
gggtggcacgagtcctttgaagatgccctgatggaaaacggcaatctgaacttcgtgaag
cccgcgtggatttatgccatcaatgaacgacagaagctgctgccctaccagccttacacc
gtcgtcccctga

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