Oryzias melastigma (Indian medaka): 112144221
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Entry
112144221 CDS
T07439
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04140
Autophagy - animal
oml04148
Efferocytosis
oml05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112144221 (vps39)
04148 Efferocytosis
112144221 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112144221 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112144221 (vps39)
Membrane trafficking [BR:
oml04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
112144221 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
112144221
NCBI-ProteinID:
XP_024124363
Ensembl:
ENSOMEG00000006826
LinkDB
All DBs
Position
LG22:23240187..23252440
Genome browser
AA seq
876 aa
AA seq
DB search
MHDAYESLPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVVSKARGATLFTCDLQLAASGE
EQLKMCVAVKKKLQLFYWKDREFHELQGDLGVPDIPKSMAWCENSICVGFKRDYYLIRLD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTVEPRLLVQSVELQRPRFITSAGPNVVYVASNHFVWRLVPVPI
ASQIRQLLQDKQFELALQLAKMKDDSDGDKKQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPELLPSDYRRQLHYPNPVPSLSGAELERAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHRKALQVLLDQSTKANSPLKGHERTVQYLQRLGVENLG
IIFEFSPWVLKHSPEDGLKIFTEDLPEVEALPREKVLQFLKEGFEELAIPYLEHIVHVWE
EQGPRFHNVLIQLYLWRVQSLMKQYLNSLPEGVPALPAGQETGDLGEYRNKLLSFLEVSS
SYEPTSLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRTAEEYCQRHYNRHVE
ANRDVYLSLLRMYLSPPDVHCLGPIKMELSEPQANLQAALQVLELHHSKLDTTKAINLLP
ADTQIREIRVFLESVLEEKAQRKRCNQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKIC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRSACPAEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcctatgagtccctgcccattctggaaaaactccccctgcagatcgactgc
ctcgccgcctgggaggactggctgctcgtaggaacaaaaccaggacatctccttctgtac
cggataaagaaagatgccggaaccaaccgctttgaagtcactttggagaagtccaataaa
aacttctcaaagaagatccagcagctgtatgtggtctctcagtacaaaatcctggtcagt
cttctggaaaacaacatccacgttcatgacctcctgacgttccagcagatcaccgtggtg
tccaaagccagaggagccacgctgttcacctgtgacctgcagctcgccgcctcgggggag
gagcagctcaaaatgtgcgtggcggtcaagaagaaactccagcttttctactggaaggac
cgggagttccacgagctgcagggagacttgggagttccggacattcccaaatccatggcg
tggtgtgaaaactctatttgtgtcggcttcaaacgggactattacctcatccggctggat
ggcagaggctccatcaaggagcttttccccactgggaaacagctggagcctctggtcgcc
ccactggctgatgggaaagtggctgtgggccaggatgacctcactgtggtcctgaatgag
gaaggagtttgcacgcagaagtgcgccttaaactggacggatatccccatcgccatggag
caccagcccccctacatcatcgcagtgcttcctcgatacgtggagatacgaactgtggag
cccaggctgctggtgcagagtgtggagctgcagcgaccgcgcttcatcacctcagcagga
cccaatgtggtgtatgtagccagcaaccactttgtgtggcgcctggttcccgtgcccata
gccagccagatccgacagcttcttcaggacaagcagtttgagctggccctccagctggcg
aagatgaaggacgactctgacggggacaagaagcagcagattcatcacatccagaatctc
tacgcctttaacctgttttgccagaaaagatttgatgattccatgcaagtgttcgccaaa
ctgggcacagatcccactcatgtgatcggactttacccagaattactgccgtccgattac
cgcagacagctgcactaccctaacccggtgcccagcctgtccggcgccgagctggagcgg
gctcacctggctctgattgattacctcactcagaaacggagtcacctggtcaagcagctg
aacgactccgacccgtccaccacgtctccgctcatggagggcacgcccaccatcaaaagc
cgcaaaaagctcctgcagatcattgataccaccttactgaagtgctacttacacaccaat
gtggccctcgtctccccactgctgcggctggagaacaaccactgccacatcgaggagagc
gagtacgtcctgaagaaggcgcacaagtacagcgagctgatcatcctgtacgagaagaag
ggcctgcacaggaaagctctgcaggttctcctggaccagtccaccaaggccaactccccc
ctgaagggccacgagcgcaccgtgcagtacctgcagcggctgggggtggagaatctgggc
atcatctttgagttctctccgtgggtgctgaagcattctccagaggacgggctgaagatc
ttcactgaggacctgcccgaggtggaggctctgccccgcgagaaggtgctgcagttcctg
aaggagggcttcgaggagctggccatcccgtacctggagcacatcgtccacgtgtgggag
gagcagggcccccgcttccacaacgtgctgatccagctgtacctgtggagggtgcagagc
ctcatgaagcagtacctgaactccctgccagaaggggttcccgcgctgcctgcggggcag
gagacgggggatctgggcgagtacaggaacaagctgctgtccttcctggaagtgtcatcc
agctacgagcccaccagcctgatcagcgacttcccgtttgacgggctgctggaggagcgg
gcgctcctgctgggccgcatggggaagcacgagcaggcgctcttcatctacgtgcacatc
ctgaaagacacgcgcacggcggaggaatactgccagcggcattacaacagacacgtggag
gcaaacagagacgtgtacctgtccctgctgcgcatgtacctgtccccccccgacgtgcac
tgtctgggacccatcaagatggagctgtcggagcctcaagccaacctgcaggcggcgctg
caggtcctggagctgcaccacagcaagctggacaccaccaaggccatcaacctgctgcca
gctgacacccagatccgggagatccgggtgttcctggagagcgtcctggaggagaaggct
cagaggaagcgctgcaaccaggtcctgaagagcctgctgcaggccgagttcctgcgggtg
caggaggagcggatcttccaccagcaggtcaaatgcgtcatcacagaagaaaagatctgc
cgagtgtgcaagaagaagatcgggaacagtgcctttgccaggtatcccaacggcgtggtc
gttcactacttctgctgcaaagatcgaagcgcctgtcctgcagagcagtga
DBGET
integrated database retrieval system
