Oryzias melastigma (Indian medaka): 112144230
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Entry
112144230 CDS
T07439
Symbol
hfm1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1 isoform X1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oml03036
]
112144230 (hfm1)
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
112144230 (hfm1)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Meiosis-specific proteins
Others
112144230 (hfm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
ResIII
Helicase_C
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
112144230
NCBI-ProteinID:
XP_024124378
Ensembl:
ENSOMEG00000016474
LinkDB
All DBs
Position
LG17:complement(17093751..17124148)
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AA seq
1438 aa
AA seq
DB search
MLDSEDLTLFFEKPVVHLVQPLQQEGNPCQLKAPPPLTDFPDTQDAQKEAESLSLLSSFS
HEQTVLQPLSKGSDGSNTYSSKVNSLSFFSDQIGNEEQHGLSNPGGYDRFWKSSSFSHSF
LEECHSGKGADETLQEFDQGAMSKYPPFDCVPSLRKSLFKRPEMTTRSDSSTKNDPETSS
SQTASTPEVYRNQPPLGFSAPSGRLPQAAQRAETQSARRAVVPPMTPQPLHIQGSAGVLR
PVSEIPVKFRSVFSEFPFFNYVQSQALDDVLYTNKNFVACAPTGSGKTVLFELAIIRLLM
ETQEPWRDVKAVYMAPIKALCSQCFDNWNKKFGHLGLICKELTGDTEIEDFFEIQDSNII
LTTPEKWDSLTRKWRDNCLLQLVRLFLIDEVHVVKDATRGATLEVVVSRMKAVHSFRTSQ
NPEAGLSMRFVAVSATIPNVSDIAEWLSNEGEPAAYLNMNESHRPVKLRKVVLGFPCNPN
QTEFKFDLSLSYKMANIIQTYSDQKPALVFCSTRKGAQQSAATLAKDARFNLSIEHKQRL
MTYANSMLDSKLRDLVLLGIGFHHAGLGLSDRKLVEEAFTHGVLSVLFTTRTLAMGVNLP
AHLVVIKSTMQYVAGSCEEYSEADILQMIGRAGRPQFDTSATAVIMTKVQTRDKYMKLMN
GMEVIESSLHGHLVEHLNAEIVLQTISDVNMALDWIRSTFLYIRALKNPAHYGFTADFDK
HGIEAQLQELCLKNLNSLSSIDLISMDEDINIKPTEAGRLMARYCVAFDTMKQFSKVDGS
ESLSDLVELVSKSKELSEIQLRVNEKRSLNSFNKDKNRTTIRFPLNGKIKSSEMKVNCLI
QAQLGCISIQDFGLSQDTAKIFRIGLRISKCLSEFLSQRSKTGFSALLNSIILAKCFQSK
LWENSPYVSKQLEKIGQTLSTAMVNAGLTTFTKIEQINPRELELIVNRHPPFGNQIRESV
LHLPKYEVCVEQLPRYNSSSAEIFVKVILTNQTQLQSKRTSPDRHYVSLLIGNADNSVVC
LHKLTDLILLKCGTWSKKIEVTRTSKGDELSVNLISSQYVGLDVQQRLMVHYTTLKGFGV
QGHSDSCTIADAHPGPKQQLSASASGSAVQVGNQNQGKKQPCSHSCKNKSACGHDCCKVC
VTAARRRPADRESSFSSYLSDLKSRSDALAQTPVKRLKMKLEEQPLLVSMQKFAFKPKPA
PRPLSCHDGSWIKASDTQQTAESDEGFGFHEDERRWKAETASRLSHSSWMIPGTNSRCLS
SGPNRISTSHSQNQNDVFLQIPAVTFDLGNEWDDFDDEKLLRASEDPRAEAQWLQTELRV
SGGAAASATPFPSRSAAPAAPQSFSQAAVNPGIRKLGSSHLSQRFPDHRRITLDVNTKKP
SVFSRQYPVKPPERPAAPRPGVHLPPGMHFFHAEGSSSLSRSSSREEEAFVGIFDGIF
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atgctggactctgaggacctcaccttgttttttgagaaaccagttgtgcatctggtacaa
ccacttcaacaggagggtaacccatgccagctgaaagcacctccacctcttactgacttt
ccggatactcaggatgcacagaaggaggcggagtctctctccctactatccagtttctct
cacgaacaaacagttctccaacctctttcaaaaggatcagatggttccaacacatattca
tcaaaagtcaacagtttaagctttttcagtgatcagattggaaatgaggagcaacatggc
ctaagcaacccaggaggatatgaccgtttttggaagagttcaagcttcagccactccttt
ctggaggaatgtcacagtggcaaaggtgcagatgaaactctgcaggaatttgatcaggga
gccatgagcaaatatccaccttttgactgtgtcccatctttgcgcaaaagtttattcaag
aggccagagatgaccaccagaagtgactcatccaccaagaatgacccagagaccagcagc
agccagacagcatccacacctgaggtttatagaaatcagcctcctctgggcttttctgca
ccaagtggccgactcccacaggcagcgcaacgcgcagaaacacagagcgcaaggagagcg
gtagttccccccatgacgcctcagccgctgcacattcaaggatctgcaggagttttgcgg
cctgtttcggaaattcccgtgaagttcagatctgtcttcagtgaattcccctttttcaat
tatgttcagtcccaggccctggatgatgttctctacaccaacaagaactttgtggcctgt
gctcctacgggatcgggcaaaacggtgctgtttgagctggccatcatccgcctgttgatg
gagacgcaggaaccgtggagggacgtgaaagctgtttacatggctcctatcaaagctctg
tgcagtcagtgctttgacaactggaataagaagtttggtcatttgggcctgatctgcaaa
gagctgactggagacacagagattgaggacttctttgagattcaggactccaacatcatc
ctgaccacgcctgagaaatgggacagtttgacaagaaagtggagggacaactgtttgctg
cagctggtcagactcttcctcatcgatgaggtgcatgtggtgaaagatgcaacccgtggt
gccaccttggaagtggtggtgagcaggatgaaggccgtgcacagctttagaacctcacag
aatccagaggcaggactttccatgagatttgtggccgtatcagccaccattcctaatgta
tctgacatagcagagtggctgtcaaatgaaggagagcctgctgcatacctgaatatgaat
gagagccatcgtccagtgaagcttcggaaggtggtgctgggattcccctgcaacccgaac
cagacagagtttaagtttgacctgtcactcagctataagatggccaacatcattcagact
tactctgaccagaagcctgctctggtgttttgttccactaggaaaggagctcaacaatcg
gctgcaactctggccaaagatgctcgatttaacctgagcatcgaacataaacaaaggctg
atgacatatgcaaacagcatgttagactctaaactcagagatctggtgctgttaggaatt
ggtttccaccatgcaggtctgggcttgtctgataggaagctggtggaagaggccttcacc
catggagtcctgtctgtcctgtttaccaccaggacccttgccatgggcgttaacctgccc
gctcacctggttgtgatcaagtccaccatgcagtatgttgcaggctcctgtgaggagtac
agcgaggcagacatcctgcagatgattggccgggctggacgaccacagtttgacacatca
gccacagcagtgatcatgaccaaagtccagaccagagacaagtacatgaaactgatgaac
ggcatggaagtgattgagagcagcttacatggtcatctggttgagcacctgaacgctgag
attgttctccaaaccatcagtgatgtcaacatggctctagactggattcgctccaccttt
ctgtacatcagagccctcaagaaccccgcccactatggtttcactgctgactttgacaaa
catgggattgaagcacagttacaagagctgtgtctgaagaacctgaactcgctgtcctcc
atcgacctgatcagtatggacgaggacatcaacatcaaacccacagaggcaggccggctg
atggcccggtactgtgtggcctttgacaccatgaagcagttcagcaaagtggatggctct
gagagtctgtctgacctggttgagcttgtttcaaagagcaaagaattgagtgaaattcag
ctgcgagtgaatgagaagagatctttaaactctttcaacaaggacaagaacagaaccacc
atcagatttcccctcaatggaaaaatcaaaagcagcgagatgaaagtgaactgtttgatc
caggctcagctgggctgcatctccatccaggactttggactgagccaggacacagcgaag
atcttcaggatcggcctgcgcatcagtaaatgcctttctgagtttctgagccaaaggtct
aagacaggcttttctgcgctgctcaactccatcatcctggctaaatgctttcagtccaaa
ctttgggaaaactcgccctacgtctccaaacagttagagaagatagggcagactctgtca
acagcgatggtgaatgctggactcaccaccttcaccaaaatagagcagatcaaccccaga
gagctggagctgatcgtcaacagacacccaccgtttggaaatcaaatccgagagtctgtt
ctgcatcttccaaagtatgaggtgtgcgtggagcagcttccacggtacaacagttcttcc
gcagaaatctttgtcaaggttatcctgacaaatcaaacccagctgcagtccaagagaaca
tctccagatcgtcactacgtcagcctgctgatcggaaacgccgacaactccgtggtctgt
cttcacaagctcacggacttgattctgctcaaatgtggcacctggtcaaagaagatagaa
gtgacgaggacttcaaaaggagatgagctcagtgtcaacctcatcagctcacaatatgtg
ggcctggacgtgcagcagaggctgatggtgcactacaccacactgaagggattcggagtt
caaggtcacagtgacagctgtaccatagcagacgctcatcctggacccaaacagcagctc
tcagcttcagcttcagggtctgctgttcaagtgggaaatcagaaccaaggtaagaaacaa
ccgtgcagccattcgtgcaagaacaagtctgcctgtggccatgactgctgtaaagtctgt
gtcacagcagcgcggaggaggccggctgaccgagaatccagtttctcctcgtacctgtca
gacctgaaaagccggtcggacgccctcgctcaaacccccgtcaaacgactgaagatgaag
ctggaggagcagcccctgctggtcagcatgcagaagtttgcttttaaacctaaaccagct
cctcgtcctctttcttgccacgatgggagctggattaaagcctctgacactcaacagaca
gcagagtcagatgaagggtttggtttccatgaagatgagcgccgctggaaagcagaaact
gcctcacgactcagtcacagttcctggatgatcccgggcacaaacagcagatgtctcagt
tctggaccgaatcggatcagcacgtctcactcccaaaaccagaacgacgtgtttctccaa
atacctgctgtgaccttcgatctgggcaacgagtgggacgattttgacgatgagaagctg
ctgagagccagtgaggatcccagagctgaagctcagtggctgcagactgaactcagggtc
tcaggcggtgcagctgcatcagcaacacctttccccagccgctcagccgctccagctgct
ccacaaagttttagtcaagcagctgtaaatcctggaatcaggaaacttggatcttctcat
ttgagccagaggtttcccgatcacaggagaatcacgcttgacgtgaacacaaagaagcca
agcgtcttcagcaggcagtacccggtgaagcccccggaaaggccggctgcgccacgtcct
ggagtgcatcttcctccaggaatgcatttctttcatgcagagggcagctcgtctctcagc
agaagcagcagcagggaggaggaagcctttgtggggatctttgacggcattttctag
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integrated database retrieval system
