Oryzias melastigma (Indian medaka): 112144272
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Entry
112144272 CDS
T07439
Symbol
ubtfl
Name
(RefSeq) upstream binding transcription factor, like isoform X1
KO
K09273
upstream-binding transcription factor
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112144272 (ubtfl)
03021 Transcription machinery [BR:
oml03021
]
112144272 (ubtfl)
Transcription factors [BR:
oml03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
UBF
112144272 (ubtfl)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
UBF
112144272 (ubtfl)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_5
HMG_box
HMG_box_2
DUF4473
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
112144272
NCBI-ProteinID:
XP_024124500
Ensembl:
ENSOMEG00000021993
UniProt:
A0A3B3CQJ1
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All DBs
Position
LG17:complement(13632657..13641171)
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AA seq
702 aa
AA seq
DB search
MNGGGSVSTAQSAKGKIDTDNWSKEDCLTLLERIRSLLPDGDAMKYKTTESHFDWDKVCF
GSFTGDMCRQKWQKVSTEVRKYRTMTELIVDAIEFVKNPYKGKKLKTHPDFPKKPLTPYF
RFFMEKRAKYAKIHPEMSNLDLTKILSKKYKELPDKKKQKYITEFQREKEEFEKNMARFK
EEHPELIEERKKSDLPEKPKTPQQLWYNHEKKLYMKVHPEVSQKELKEALRRQWSQLSDK
RRLKWISKALELQKDYEGSMRAYHEAHPDVNSDDHIRSVLTKAERQLKDKFDGRPTKPPP
NGYSLYCAELMVNMKDVPSTERMVLCSKQWKMMTQKEKDMFQKRCEQKKKQYDIDLQRFL
ESLPDEERDRVLGEEKMGGAKVTVASSPHRAKSPSVKERTREVEPEQWVPPGPPKDRRDA
KKTVKLPETPKTAEEMWQHSVIGDYLAKYRSDRRKAQVAMEAAWKSMEKKEKIPWIKKAA
EDQKRYEVQYRPVRELLEMRAPATGQRKPKFDGEPKKPPVSGYQMFSQELLTNGELNHFS
LKERMVEIGKRWQKLSQTQKDKYKKQVEEQQVEYKAELEAWVKSLSVQDRAAYKEFSSSK
RRSTAKVRSSPVAKVRVTAKGKASGSRPAPPAVSVNKRAMAYRAKQDMSDSDEEEKSDST
DSDDDDETSGSTDSEDEDENDDDEEDDDDQSSSEESSDTDSD
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcggcggcagtgtctccacggcgcagagtgccaagggcaagattgacacagat
aactggagcaaggaggactgcctgactctgctggagaggatccgcagcctgctgccagac
ggagacgccatgaaatacaaaaccacagagtcgcacttcgactgggataaagtgtgtttt
ggcagtttcaccggagacatgtgtcggcagaagtggcagaaggtctcgacagaggttcgg
aagtacagaacaatgacagagctcattgtggacgccatcgaatttgtcaagaacccgtac
aaagggaagaagctgaagactcacccagatttccctaagaagcccctgaccccgtatttt
cggttcttcatggagaaacgagccaaatatgccaaaatccacccagagatgagcaaccta
gatttgactaagatcttgtctaagaagtacaaagagctccccgacaaaaagaagcaaaag
tacatcacagagtttcagcgggagaaggaggagtttgagaaaaacatggcgcgattcaag
gaggaacatccggaactcatcgaggaaaggaagaagtcggacctacctgaaaaacccaaa
accccccagcagctgtggtacaaccatgagaagaagctctacatgaaggtccacccagag
gtgagtcagaaggagctgaaggaggctctgaggagacagtggtcccagctctctgacaaa
agaagactcaagtggatcagcaaagccctggaactgcagaaggactacgagggcagcatg
agggcgtatcacgaagctcacccagacgtcaactcagacgatcacattcgctctgtcctc
accaaggcagagcgacaactcaaagacaagttcgatggccggccgacgaagcctccaccc
aatggctactctctgtactgtgcggagctaatggtgaacatgaaggacgtccccagcaca
gagcgcatggtgctctgcagcaaacagtggaagatgatgacgcagaaggagaaggacatg
ttccagaagcgctgcgagcagaaaaagaagcagtacgacatcgacctgcagcggttcctt
gagagtcttccagacgaagaacgagacagagtgctgggagaggagaagatgggaggtgcc
aaagtgaccgtagcctcaagcccacatcgagccaaatctccatctgtgaaggagcgtacc
cgtgaagtggagccagagcaatgggtacccccaggaccacccaaagaccggcgggatgct
aagaagacggttaagcttccagagacgccgaaaacggccgaggagatgtggcagcacagt
gtgattggagactacctggctaaatacagaagcgatcgcagaaaggcacaggtggcgatg
gaggcagcctggaaatcaatggagaagaaggagaagattccatggatcaagaaagcagca
gaggaccagaagcgttacgaggttcagtaccggcccgtgagggagctgttagagatgaga
gctcctgcaactggacagaggaagcccaagtttgatggagaacccaaaaagcctccagtg
agtgggtatcagatgttctcccaggagctgctgaccaatggtgagctaaaccacttcagc
ttgaaggagcgcatggtggagatcggcaaacgctggcagaagctgagccagactcagaaa
gacaaatacaagaagcaggtggaggagcagcaggtggaatacaaggccgagttggaggcc
tgggtcaagtctctgtctgttcaagatcgagcagcctacaaagagttctcctcctcgaaa
cgtcgcagcaccgcaaaagtccgcagtagtcctgtggccaaagtccgggttacagcaaag
gggaaggccagtgggtcgagacctgcacctccggcagttagcgtcaacaagagggcgatg
gcgtatcgggccaagcaggacatgtccgactctgacgaggaggagaaaagtgactccaca
gactcggatgacgacgacgaaacttcagggagcacagacagtgaggatgaagatgagaac
gatgacgatgaagaggatgacgatgatcagagttcgtcggaggaatccagcgatacagac
tccgactag
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