Oryzias melastigma (Indian medaka): 112144669
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Entry
112144669 CDS
T07439
Name
(RefSeq) LIM and calponin homology domains-containing protein 1 isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
oml04990
]
112144669
Domain-containing proteins not elsewhere classified [BR:
oml04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
112144669
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
112144669
NCBI-ProteinID:
XP_036072215
Ensembl:
ENSOMEG00000003079
LinkDB
All DBs
Position
LG2:21226728..21306977
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AA seq
1183 aa
AA seq
DB search
MARPVADSGQHPVNSAAESALQEAQKWIEAATGRSFGEKNFQGNLDNGILLCELLSSIKP
GLVKKINRLPTPIAGLDNLTAFLRGCEELGLKGSQLFDPGDLQDTSTRPTAKGSDCSRRL
KNVLITIYWLGRAANSCTSYSGPTLDLKEFEALLSQMRKEAEDTESPLCSTRDSGYIDCW
DSERSDSLSPPRHGREDSFDSLDSFGSRSQQTPSPDVLVVRGSSDGRGSDSESDGLPNRK
IPDIHKDDMLARRTSVTELRTAMPFNQYLPNKSNQSGYIPLLLRKKKSNKEADGGGSWST
ATSPVGGNRPCSTPARSWSEELLPHSASVVTNTINAAGGHQTETHPEDAGGTGAKGGDAP
ALQSLALTTSDFHVLPSAMATTSAGASDTDRQKGRTLSERDDVKEEKPWLDFLPATSMSM
VDMHGEENRLQPHSQVRHEGMFNQYNQMKEDESHWQDDLARWKSRRRSISQDLIKKEEER
KLMEQLLTGHADLSQRRRSIKTYREIVQDKERREEDLRQAYKQAKTPEEASAILQRYAQR
FSISETILERLQLPKLLDRSVSADPSFPISLSASPTTPDPFDEGPDGPMKYLRQQSAPTP
KFTSTLEARIGEIPKEPSSQQRLPVRSRSSEPPSTRALSPKAVPLLSPKPYIQPRSAAAE
TWDSKAGSVNGDDGSDTPHMKPQSEGRETPNFQASSPLFGNNPSTYTDEGESPSSTTASL
THSRSDAAPQEHARERSTPPSRPTSLPEKLQKPEEGFQTVGHTEAPLNTSRLAPSAEAKQ
EEEEAEISSESLCRLIQSETHMQKNRLKSTADPSQTEKELGSEVSALFGPQPSRETPGEF
EISVRSLQATSNPKLRWEFFAVPEDAGKDQRRNVSVPVFPQAKREDRWSWDPDEERKRQE
RWQQEQEHMLQEKYQREQEKLKEEWEKAQREVMEEEKKYREEERRILEETVMPLTPRSPA
GPSPSQGEQMSSSGPRDTIFQSAAERRHIQEVLEGQARTVAWKRREENGMSSISTAEDSS
RAGRSLVSRSSGQAESSVQSPFPARSATPVRTPQEPQADSSRPGRPAGERSSRSELMVTN
TGHSSPKPPAARPPAAATQPPASCRSVSGKKLCSSCSQPLGKGAAMIIETLSLYFHIHCF
KCGVCKGQLGDTTTGTDVRIRNGLLNCHQCYIRSRSAGQPTTL
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtccggtggcagactcggggcagcatcccgtcaactctgcggcggagtccgct
cttcaggaggcgcagaaatggatcgaggctgccacggggagatcgtttggtgagaagaat
ttccaaggcaatttggacaatgggatccttttgtgcgagttgttgagttccataaagcct
ggcctagtgaagaagatcaacaggctgccaacacccatagctggtttggacaacctaacc
gcctttctgcgtggctgtgaggaactgggactgaagggctctcagctgttcgaccctgga
gacctgcaggacacatccacacgccccactgccaagggaagtgactgtagtcgaagactc
aagaatgttttaatcaccatctactggcttggtcgcgctgccaacagctgcacctcctac
agcgggccaaccctggacctgaaagagtttgaggctctgctgtcacaaatgcgaaaggag
gcagaggacacggaaagcccactttgcagcacccgggacagtggctatatcgactgctgg
gactctgagcgcagcgactctctgtctccgccgcgtcacgggcgcgaggattcattcgac
agcctggactccttcggttctcgctcacagcagacaccatcaccagatgtcctggttgtc
cgcggcagtagcgatggccgtggcagtgactccgagtctgatggtcttccaaacaggaaa
ataccagacatccacaaggatgacatgttagcacggcgaacatcagtcactgagctccgg
accgccatgccattcaaccaatacctgcccaataagagcaatcagagtgggtacataccg
ctgctgctccgcaagaagaagagcaacaaagaagcagacggaggcgggagctggagtact
gccacgtcacctgtgggggggaataggccgtgcagtactccagctcgctcatggtcagag
gaactccttccccattcagcatctgttgtaacaaacaccatcaacgcagctggaggacat
cagacggaaacacacccagaggatgcaggaggcacaggtgcaaagggaggcgatgcaccg
gctcttcagagcctggccttgactacttctgacttccatgtgttgcccagtgccatggca
accacttcagcgggagcatcagatacagaccgacagaagggaaggacactaagtgagaga
gatgatgtaaaagaagagaagccttggttggactttcttccagcaacgagtatgagcatg
gtggacatgcacggtgaggaaaacaggctgcagccacacagtcaggtgcgtcacgagggg
atgttcaaccagtacaaccagatgaaggaggacgagagtcactggcaggatgatctggct
cgatggaaaagccgtaggaggagtatatctcaggatctcattaagaaagaggaggagagg
aaactgatggagcagttattgacaggacatgcagatctctctcagaggagaagaagcatc
aagacctacagagagatagtccaggacaaagagcgccgtgaggaggacctgcgacaggcg
tacaaacaagcaaaaactccagaggaagcatcggccatcctgcagcgctacgcacagcgc
ttctccatcagtgaaaccatactggaacgcctgcagctgccaaagctcctggaccgcagc
gtgtccgctgacccttccttcccaatctctctgtcagcctctcccacaactccagatcct
tttgatgaaggcccagacgggcccatgaaatatctgcgacaacaatcagcaccaactcca
aagttcacatcaacgctggaggcacgaataggagagattcccaaagagccatcgtcccag
cagaggctccccgtccgctctcgctcatctgagccgccttcaacccgagccctctccccc
aaagctgtgcctttgctctcccccaagccttacatccagccccgaagtgcagcagctgaa
acctgggacagcaaggcaggaagtgtaaacggtgatgacggcagtgacacccctcacatg
aagcctcagagcgaaggcagagaaactcctaatttccaggcatcttcccccttgtttgga
aacaatccttcaacctacaccgatgagggagaaagtccatcctcgacaacagcctctcta
actcacagccgctctgacgcagctccccaagagcacgccagggagcgctccacacccccc
agccgcccaacgtcactcccagagaagctgcaaaagccagaagaaggttttcagactgtg
ggtcacacggaggcaccgttaaacacaagtcgactagcgccatctgcagaagccaaacaa
gaggaagaggaagcagaaatatccagtgaaagcctctgcaggctaatccagtcagaaaca
cacatgcagaaaaacaggctcaaaagcacagcggatccctcacaaacagagaaggagctc
ggctcagaggtgtcagcattgtttggtcctcagccctcgagggaaacgccaggagagttt
gaaatcagtgtcaggtctctgcaggcaaccagcaaccctaagttacgctgggagttcttc
gctgtgccagaggacgcaggaaaggatcagcgcagaaacgtttcagtgccggtgtttccc
caggccaagcgggaagaccgctggtcttgggacccggatgaggagcgaaagcgtcaggaa
aggtggcagcaagagcaggagcacatgctgcaggaaaagtaccagcgtgaacaggagaag
ctgaaggaggagtgggagaaagcgcagagggaggtgatggaggaggagaagaaatatcgt
gaggaggaacgaaggatactggaggaaaccgtgatgccgctgacgccccgctctccagcc
ggaccctcgcccagccagggggagcagatgtcctcctctgggcctcgggacacaatcttc
cagtcagcagctgagcggcgacacatacaggaagtgctggagggtcaggcaagaacggtg
gcgtggaaacggagagaggagaacgggatgagtagcatcagcacggctgaggacagctcc
agagccggcagaagcttggtgagtcggagcagcggtcaggcagagagttctgtccaatca
ccttttccagcccgatctgcaactccagtgagaacgccacaggagccccaggcagacagc
agcagacccggccggcctgctggagagcgaagttccaggagtgagctgatggtcacaaac
accggccacagctcgccaaagcctccggcagcacgtccgccagcagccgccactcagcct
ccagcctcctgcaggtctgtcagtgggaagaagctctgctccagctgcagtcagccttta
gggaaaggtgcagcaatgatcatcgagactctcagtctctatttccacatccactgcttt
aagtgcggtgtgtgcaaaggccagttaggcgacacaaccaccggcaccgacgtccggatc
aggaatggcctccttaactgccaccagtgctacatccgctcccgctcggctggacagcca
actaccttgtga
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