Oryzias melastigma (Indian medaka): 112144918
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Entry
112144918 CDS
T07439
Symbol
cntn3b
Name
(RefSeq) contactin-3
KO
K06761
contactin 3/4/5/6
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oml04515
]
112144918 (cntn3b)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
oml00537
]
112144918 (cntn3b)
Cell adhesion molecules [BR:
oml04515
]
Immunoglobulin superfamily
Contactins
112144918 (cntn3b)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
oml00537
]
Others
112144918 (cntn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_5
Sp38
Ig_C17orf99
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
C2-set_3
Pox_C7_F8A
Interfer-bind
Motif
Other DBs
NCBI-GeneID:
112144918
NCBI-ProteinID:
XP_024125570
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Position
LG5:4639131..4742483
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AA seq
1036 aa
AA seq
DB search
MSLISPLQLKMMLPWKQIVLLSITGCLAACTEDVIFQGPRWRTEPSDLILPINSPDHQAT
LTCEAEGSPPPQYRWSLNGTLIDPGHDYRRRVSGGSLIISNLDKDQDSGVYQCTAFNTRG
SILSRRASLQFAYKDNFKTQMVRSAVNVREGQGVVLLCGPPPHSGELTFAWIFNQYPYFV
QQDSRRFISQETGSLYIAKVEPSDVGNYTCVVNNTITREKALSSPTPLVLRNDGVMGEYE
PKIEVHFPDPVPAAKESVVKLECFALGNPVPEISWRRTSGVPFPSKVKMKNSNAVLEIPN
FQQDDSGTYECMAENRRGKNAARGRISFHAKPHWIQTMTDSALSIEENLFWECKASGKPK
PSYSWLKNGEQVTAEGRVQIENGALSITALNLSDSGMYQCVAENKHGTIYYSAQLMVLAS
APHFTKTPLKTLLKARSGSEVTLECKPEASPPAISLWKKGNEILQRSERISLFSNGTLKI
ANVTKRDAASYTCVAKNQFGSASTSGRLIITEPTRITVRPTNMEIIVGESIVLPCQIASD
PALEVTFSWAFNGQLIDFQRDGDHFERVGGSVSGDLMIRNIQLNHGGKYVCVIDTEVESL
STSAILVVKAPPGPPDKVTVEEITDSTAQLSWTPSRDNGSPITGYSVQARTPFTVGWQAM
DTVPEVVTGNMLTATVVGLNAWVEYEFRVVARNAVGLGEPSPSSAKTRTEDTIPDTAPTD
VGGGGGTKSELVITWEPVPEELQNGDGFGYIIAFRPAGAVTWTRAVISTPGVSRYIFRND
TIPPFSPFDIKVGAYNNRGEGPFSTITTVYSAEDVPSVPPKRVRARSLSAAQIEVMWEAV
PDMPERVLGYEVVYWEDDTKPDTIGKVRITGNYTLVNITGLKANTAFYLSVAAFNTAGPG
PQSAPINCTTKKPPPDRAPLNIQWTMIGSTLTLHWDPVVATEMESKVTGYAVVVKKHRYN
EINTIFTNKTTAELSLSASDNYLIQIKALSEGGEGVGSEPIHIHKLSMGARGSGAGHLSQ
VPLSVLLIRSVLCSLW
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttattagccccctgcaactaaagatgatgttgccatggaaacaaattgtcctg
ctatcaatcaccggatgccttgcagcctgtacggaggatgtcatatttcaagggccaaga
tggaggacggagccaagtgacctcattttacccatcaactccccggaccatcaggccacc
ctcacgtgtgaggccgaggggagcccgccgccgcagtacagatggtcactaaacggaaca
ctcattgatccggggcacgactaccggcgtcgcgtgtctgggggcagcctgatcattagc
aacctggacaaggaccaagacagtggcgtgtaccagtgcactgctttcaacacgaggggc
tccatcttgagccgcagagccagccttcagtttgcatacaaagacaacttcaaaacccag
atggtgaggagcgccgttaacgttcgagagggccaaggagtagttctgctgtgtggacct
cccccacattctggagagttgacttttgcctggatcttcaaccagtatccatactttgtc
cagcaagacagccgaaggttcatctcccaggagaccgggagtctgtatatcgccaaagtg
gagccctcagatgttgggaactacacttgtgtggtgaacaacaccatcaccagggagaag
gccctcagctctccaacaccattggtcctcaggaacgacggtgtaatgggcgaatatgaa
cccaaaatagaagttcattttccagatccagttccagctgccaaagagtcggtggtgaaa
ctggaatgcttcgctctgggaaacccggtgccagaaataagctggaggaggaccagcggc
gttcctttccccagcaaggtgaaaatgaagaactcaaacgccgtcctggaaatacccaat
ttccagcaggacgattcaggcacctatgaatgcatggcggagaatcggcgaggaaaaaat
gcggcgcggggtcgcatttcattccacgctaaacctcactggatccagaccatgacggac
tcggctttgtccatagaggaaaacctcttctgggagtgtaaagccagcggaaagcccaaa
ccgtcctacagctggctgaagaacggggagcaagtgacggccgagggccgcgtgcaaatc
gagaatggggccctctccatcaccgcgctgaacctgtcggattccgggatgtatcagtgt
gtggccgaaaacaaacacggcactatttattacagcgcccagctaatggtgttggcttct
gcgccgcacttcactaaaacgccgctaaagacgctgctaaaagcccgctcgggcagcgag
gtcactctggaatgcaagcccgaggcttctcccccagcaattagcctgtggaagaaaggg
aacgagattctacagagaagcgaaaggatatctttgttttcaaatggaacactgaaaatt
gccaatgtcaccaaacgggatgcagccagctacacgtgcgtggctaaaaaccagtttgga
tcagcgagcacatctggaagactcattatcacagaacccaccagaatcaccgtgaggccc
accaacatggagatcatcgtgggggagagcatcgtgctgccttgccagattgcctccgat
cccgctctggaggtcacgttctcctgggcgttcaacggtcagctgatcgacttccagcga
gacggcgaccactttgaaagagtgggtgggagcgtttctggagatctgatgattcgtaac
atccagctgaaccacggtgggaagtacgtgtgtgttatcgacaccgaggtggagagcctg
tccacgtctgccattctcgtcgtcaaagcacccccaggccccccagacaaggttacagtg
gaggaaatcacagacagcaccgctcagctcagttggactccaagccgggacaacggcagc
ccgatcaccgggtacagcgtccaggctcggacacctttcactgttggctggcaggccatg
gacacagtgccggaggtggtcacagggaacatgctcacagctacagtggtgggcctgaat
gcatgggtggagtacgagttcagggtggtggctcgcaatgccgttggcctcggagagccc
agcccatcctcggctaagaccaggacagaggacacaatccccgacacggctcccactgat
gttggagggggaggcggcacaaagtctgaattagtgataacttgggagccggttcctgag
gagctgcagaacggagacggcttcggctacatcatcgccttcaggccggcgggtgcagtc
acatggacgcgggcggtcatctctacgcccggtgtgtcacgctacattttccgcaatgac
accatcccacccttttcgccattcgacatcaaagtgggagcctacaacaacagaggggag
gggccattcagcaccataaccaccgtctactcggcagaggacgtccccagtgtgcctcct
aagagggttcgggccaggagtttgtctgcagcacaaattgaagtaatgtgggaagctgtc
cccgacatgcctgaaagagtcctgggttatgaggttgtgtactgggaagatgacaccaag
cccgacaccatcggcaaagtgcgcataactggaaactacaccctggttaatatcacaggg
ctgaaagcaaacacggcgttctacctctctgtggctgctttcaacactgccggccccgga
ccgcagtctgcgcccatcaactgcaccacaaagaagccacctcctgatcgggctccgctc
aacatacaatggaccatgatcggctctacactcaccctgcactgggaccctgtggtcgcc
acggagatggagtcaaaggtgacggggtatgcggtggtggtgaagaagcatcgctacaac
gaaatcaacaccatcttcaccaacaaaaccacagccgagctcagcctctccgccagcgac
aactatctgattcagatcaaggctctgagcgagggcggggaaggcgtgggcagcgagccc
atccacatacacaagctgagcatgggcgcaagaggttcgggagcaggtcacctcagtcaa
gttcccctctccgtcctactcatccgttcagtgctctgctcgctctggtga
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