Oryzias melastigma (Indian medaka): 112144935
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Entry
112144935 CDS
T07439
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112144935 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112144935 (arid1b)
03021 Transcription machinery [BR:
oml03021
]
112144935 (arid1b)
03036 Chromosome and associated proteins [BR:
oml03036
]
112144935 (arid1b)
Transcription factors [BR:
oml03000
]
Eukaryotic type
Helix-turn-helix
ARID
112144935 (arid1b)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112144935 (arid1b)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112144935 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
NatA_aux_su
Motif
Other DBs
NCBI-GeneID:
112144935
NCBI-ProteinID:
XP_024125605
LinkDB
All DBs
Position
LG22:complement(16102731..16328074)
Genome browser
AA seq
2203 aa
AA seq
DB search
MAAQVASAPTRTNNKNKKLSGGLCPDLNSAKSGGGGGSAQRAGPMLGPGDGTLNNVDHNR
RSELSALHSASAAHGAPDGLDKAGNNLAPAPNPSAASMEAGSIANHKLKCVGSGDPAQPQ
PPQFGQFAPHQRPIQSNSSASNNGQLPRGDRGMDHQHHGGKENLLGAQEEHLTGKGEGEL
TCKPSERMMSSRFEQPNLGPPGNNSEFNNNYYTPRPCYDQHGGQSTMGITHAHNNMENSH
EGGYNSQYGQYPAYRAGYGGGAYGMMGPSGCRQTGSMMMGSNSSASHPKPPLGGSSGGFQ
RYPGQTQQQQQQQQQHPSGATPTLNQLLTSPSPMMRGYGGPYQDYSGPASQQAGMGLGKD
LGPQYGATSAHWGGQQRNHPLSVTPGSGGQGLGRAQVSSMDFMAMKRSQLYGMANNPYPA
AQQPGGGHYPPSQPYSSPPAHRYPMNMPTRSQMGIGGIQYPQQQQVPPYGQQAMGGYSQQ
QQQQQQGGPQQGTPPYFSPPQQTPAGPTQNSYLQPRAPQQQEVQQENYSVRGSASGNSGK
PNEDGVAHIRPSSLPDLSGSIDDLPTGIEGGLGSAACAGGSSSSNSSGSQGEQPNASNQG
QSPFSPHASPHLQSQRSGPSPSPVVSPAGSTQSQQSRSGSGPISPVSGPSANTPAPGSGM
APQSSGNGQDAAHLQMTRSPMAQERGFMSNIQRNQSGSQFASPQSPHPPHGGGPLYPSMG
PYSQSSPAGSYGPQGAQYGHQNNYPRTSNYSGSANPNYNNSLGMNATSPMQGQGPGQPVP
GGRGHGPGSHNRVYTSMGPSSPSVPQPAGPGMGPPSLGSSNRKGQDAGAAGSMAGSTNAL
NNRQSSYQTPGSSQSSSVPYSQPMGSNNLTMGNTQAPGYNIPPSGGVAPPGDNMMSPDGK
TKMDVKDEGNLNSEPQKPKMPEGYMNNNSNNTSQPATPGGALPVPSPLSPSPASLSSYHG
DDSDSISSPPWPLKAPCSPKPNPNSSLGSERIARLYELGSEPERQVWVERYLNFMEERGT
PVTQLPVVGKKLLDLWKLYIAVREIGGLAMVNKNKKWRELSTTLNVGTSSSSASALKKQY
IQYLFAYECKMERGEEPPGDSNSGSSISGGDNRKQVKIQPPSPAHSGGSLQGPQTPQSSG
SSSAAEAAGDLKPPTPATTPLGQVTPLPPNRNMVSVQDPFSEVSDPAFQKRPAALPHSGP
YQQGLSMPDMMMRMQYDTKDPFVGMRKMAGVDPYLPSQMPSGGMQDMYGRSPSALSMSQR
SQYPYGPGYDRRPDHLMGMEGSMGPPGGQNNLGPANSEGSMYSPSRYPSQQRHDSYGQQY
PSMPYGMHPSGMYSQQQQGYKRPIDGMYGPPAKRHESDVYGMQYGSQQPDVYNHYGGGYS
GPEHRPLQGQFPYYHRDRMVSSGQSQHTIMGGGPTPNHTTDGPNMWTSRTDLGYPYPNRP
PSQMAPYSSICREDMDGRAGPDQWHRQSAYMPSAGGMPHLPSRQPLSYSNSSSMANHLPR
APSPGAFQRSMDMSPSKASFMSPMKKPGMMGPQSTGPMGHFPPNLRRDLNYPPGSTEATM
PVLRPRRKLTSKDTGTPEAWRVMMSLKSGLLAETTWALDTINILLFDDSTVASFNLSQLP
GFLELVVEYFRRCLIEIFGILEEFEVGTVAHKHLLDADLIQGKEQETNSTSLPETEASPP
ADGAQTGSTNPEAAPAQSSDVQRKEPNSSVKKDEEDREERENEKGKESKKAEQRPADLES
KVKQASKYDKFPIRIVPNEDLLEDMTKHLGYVTEFSSGLLHWQAGGGDSTKHIQLHFEPR
SDPPICADDRKRSDFRQSDALKDEPPRKHITATIDDVLCARVDALSYAHPARSLPSYPFR
VHPDGADDGITLLEDEPHCLDESPLCTISSWQDSLSKRCLCISNVLRSLSFIPGNDSDMS
RHPALVLLLGKLLLLHHLHPERNRSAPSYQKEGHQEQGLASSKEEWWWDCLSLLRENAMV
TLANIAGQLDLSTYPDTICLPVLDGLLHWMVCPSSEAQDPFPSAAPHSQLTPQRLVLECL
CKLSIQDGNVDLLLATPPFSRQEKLFAVLVRYVSQRKAQVYREMAVAVLSHLAQGDPTAA
RAIAMQKGSVGNLVAFLEDGVSMAQYQQNPHSLLHMGHPPMDPPSVNMMCRAAKGLLAMA
KVEENKTEFVLYENRLLDISISSVLNTGVVAIICQVLFHLGKL
NT seq
6612 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcaagtggcatcggctccgaccagaaccaacaataaaaacaagaaattgtcc
ggcggtttgtgtccggatctgaattctgcgaagtccggaggaggaggagggagcgcgcag
agagctggaccgatgctgggacccggcgatgggactctgaataatgtggaccacaaccgg
cggagcgagctgagcgcgctccattcagcctccgcggctcacggtgcgccggacggcctc
gacaaggctgggaataacctcgcccccgcgccgaatccgagcgccgcgtcgatggaagcg
ggttccatcgcgaaccacaagctgaaatgcgtcgggagcggagaccccgctcagcctcag
ccgccgcagttcggccagtttgcgccccaccagcggccgatccaaagtaacagcagcgcc
agcaacaacggccagctgccccgcggggacaggggcatggaccatcagcaccacggaggg
aaggagaacctgttgggggcgcaggaggagcacctgacggggaaaggtgagggggagctc
acctgtaagccctctgagaggatgatgagctccaggttcgagcagccaaacttggggcca
cctggcaacaactccgagtttaacaacaactattacaccccgaggccctgctatgaccaa
catggcgggcaaagcactatgggaataacgcacgctcacaacaacatggagaactcccat
gaaggagggtacaacagccagtacgggcagtacccggcctaccgggcgggctacggcggc
ggggcctacgggatgatgggcccctctgggtgccggcaaacggggagcatgatgatgggc
agcaactcctcagccagccaccccaagccccctctgggaggcagttcggggggctttcag
aggtacccggggcagactcagcagcagcagcagcagcagcagcagcacccctcaggggcc
accccgaccctcaaccagctgctgacatcccccagcccgatgatgcggggctatgggggg
ccctatcaagactacagcgggcctgcgtctcagcaagccggcatggggctggggaaggac
ttggggccccaatatggagccacatccgcgcactggggaggccagcagaggaaccaccca
ctgtcggtgaccccgggcagcggaggtcaaggccttggcagagcgcaggtgtcctccatg
gattttatggcaatgaagcgctcccagctttatggcatggccaacaacccctaccctgcc
gctcagcagccagggggcggacattacccccccagccagccatactcatctcctcctgcg
catcgatatccaatgaacatgccgacgaggagccaaatgggcataggagggattcagtat
ccccagcagcagcaggttccgccgtatggccaacaggcgatgggaggctacagccagcag
cagcagcagcagcagcaaggggggccgcaacaaggaacccctccatacttcagcccccct
cagcagacgcctgcaggccctacccagaattcttacctgcagcctcgagctccacagcaa
caggaggtccaacaagaaaactacagcgttagaggctcagcttcagggaattctgggaaa
cccaatgaggacggcgtcgcccacatccgcccatccagcctccctgatctgtctggctca
atcgatgaccttcccactgggattgagggaggcctgggctcagccgcctgtgctggcgga
tcctccagcagcaacagcagcggcagccaaggggaacagccaaacgcaagtaaccaagga
caatcccccttctccccccacgcttcccctcatcttcaaagccagaggagcgggccctct
ccctccccggtggtctccccggcaggttccacacagtcccagcagtccagatcggggtcg
ggacccatttcccctgtgagtggcccttctgcaaacacacctgcaccaggttccggcatg
gcgccgcagagctcgggaaatggacaggatgcagctcatttgcagatgacacgctcaccc
atggctcaggagagagggttcatgtccaacatccagaggaaccagagtggctcccaattt
gcttctccacagtcccctcacccaccccatggaggaggcccactgtatcccagcatgggt
ccgtactcccagagcagccccgctggttcttatggacctcaaggagcccaatatggtcac
caaaataactaccctcggacgtctaactacagcggctcagccaatcccaactacaacaac
agcctgggaatgaacgccaccagccccatgcagggtcaggggcccgggcagcccgttccg
gggggccgcggccacggtcctggcagccacaacagagtttacacttctatgggtcccagt
tcaccaagcgtgccacagccagctggccccgggatgggtcctccgtcgttgggaagctct
aaccgtaagggccaagacgcgggcgccgcaggcagtatggcaggaagcaccaacgcactt
aacaacaggcagagcagctaccaaactccgggtagcagccaatcaagcagcgtcccctac
agtcagccaatggggagcaacaatttaaccatgggcaatacgcaagctccgggctacaac
ataccgccgtcagggggcgtggctcctccaggagacaacatgatgagccctgatgggaaa
acaaagatggacgtcaaagacgaaggcaacctcaacagcgagccacaaaagccaaagatg
ccagaaggttacatgaacaacaacagcaacaacacgtcccagccagccactccaggtgga
gccctgcccgtgccctcgcccctctcccccagccccgccagtctgtcctcgtaccacggc
gatgacagcgacagcatcagcagcccgccgtggcctctaaaggctccctgcagccccaaa
ccaaatcccaactcctccctgggcagtgaacgcatcgcgcggctgtatgagctgggttca
gagccagagaggcaggtttgggtggagcgatacctgaacttcatggaggagcgtggcacg
cccgttacccagcttccagttgtaggaaagaagctgctggacctctggaagctctacata
gctgttcgggaaataggaggcctcgccatggtaaacaagaacaaaaagtggcgcgagctg
tccacgactctgaacgttggtacatccagtagttctgccagcgcactgaagaaacagtac
atccagtacctgttcgcctatgaatgtaagatggagaggggagaagaaccaccaggtgac
agcaacagtggcagcagcatcagtggaggggacaacaggaagcaggtcaagatccagcca
ccatcgcctgctcattcaggcggctcccttcaaggcccgcagacgccgcagtcatctgga
agcagctccgcagccgaggcggcaggcgacctgaaaccgcccacgcccgccaccaccccg
cttggacaagtcaccccgctcccccccaacaggaacatggtgagcgtccaggatcccttc
tcagaggtcagcgaccctgccttccagaagcgccctgctgcactacctcactcaggaccc
taccagcagggcctcagcatgcctgacatgatgatgaggatgcagtacgacactaaggat
ccgttcgtgggcatgaggaagatggcaggagttgatccctatttaccaagccagatgccc
agtggtgggatgcaggacatgtacggccgctctccctcagccctgagcatgagccagagg
tcacagtatccatacggacctggctatgacaggagaccagatcacttgatggggatggag
ggaagtatgggcccacccgggggtcagaacaacctgggacctgcgaacagtgaaggcagc
atgtactcccccagcagatacccttcccagcagagacacgacagctacgggcagcagtat
cccagcatgccatatggaatgcatccatctgggatgtattcacagcaacagcagggttac
aaacgaccaattgatggaatgtacggccccccagcaaagaggcacgagagcgatgtgtac
ggcatgcagtatggcagccagcagccggacgtgtacaaccactatgggggtggatactct
ggacctgagcacagacccctccaggggcagttcccctattaccacagagaccgtatggtc
tcgtcgggccagagccagcacactattatgggcgggggccccacccccaatcacaccacc
gacgggcccaacatgtggacttctaggacagacctcggctatccgtaccccaacaggcca
ccgtctcagatggcgccgtacagctccatctgcagagaggacatggacggtcgagcgggc
ccggaccagtggcaccgtcagtctgcctacatgccatccgccgggggaatgccgcatcta
ccgtcacgccagccactatcgtactccaactcctcgtccatggccaaccatctgcctaga
gctcccagcccgggggccttccagcgctccatggacatgtccccaagcaaagcatccttt
atgtctcccatgaaaaaacctgggatgatgggcccacagagcactggccccatgggtcat
tttcctcccaacctgagaagggacctcaattacccaccagggtcaactgaagccactatg
ccagttctaagacccagacggaagctcacctctaaggacaccggaacaccagaagcgtgg
cgcgtgatgatgtctctaaagtctggcctgctggcagagaccacatgggctttagatacc
atcaacatcctgttgtttgacgacagcacggtggcctccttcaacctctcccagctgccc
ggattccttgagctcgtcgtggagtacttccgccgatgcctgattgagattttcggcatc
ttggaggagttcgaggtggggaccgtggctcacaagcacctcttggacgctgatcttatt
caagggaaggagcaggaaacgaactctacttccttgccggagaccgaagcgtccccgccg
gctgatggggcgcaaacaggaagcacaaacccagaggctgcacctgcacaatcgtctgac
gtgcaaagaaaagagccaaactccagcgtgaaaaaagacgaggaagacagagaagaaagg
gaaaatgaaaaggggaaggagagtaaaaaggcggagcagcgtccagcagacttagaatca
aaagtcaaacaagccagcaagtacgataaattccccatcaggattgtgcccaatgaggac
ctgcttgaagacatgaccaagcacttgggttatgtcacagagttcagcagtgggctgctg
cactggcaggcgggtggaggtgactccaccaaacacattcagctgcactttgagcctcgg
agtgacccgccgatctgcgcagacgacaggaaaaggagcgacttcagacagagcgacgcg
ctgaaggatgagccaccgcgcaaacacatcactgccacaatcgacgatgttttatgcgcc
agggttgacgcgctctcatacgcgcaccccgcccgctccctaccatcctaccccttcagg
gtacacccagacggcgcggacgacggcatcaccctgctggaggacgagccccactgtctg
gacgaatctcctctttgcaccatctcctcctggcaggactccttgtccaagcggtgcctg
tgcatctccaacgtgctcagaagtctgtccttcatccctggcaatgactcggacatgtcc
cgccaccccgctctggttctcctcctcggcaagctgcttctcctgcaccatctgcacccc
gagcggaacaggtcagctcctagctaccagaaggaggggcaccaggagcaggggctggca
agcagcaaagaggagtggtggtgggactgtctcagcctgctgagggagaacgccatggtg
acactcgccaacatcgcgggccaactggacctctccacatacccggacaccatttgcctc
ccagtgctggatggtctcctccactggatggtttgtccatcgtctgaagcccaggacccc
ttcccctcggcagcgccgcactctcagctcacccctcagaggctggtgctggagtgcctc
tgcaagctgagcatccaggacggcaacgtggacctcttactggccacgccccctttcagc
agacaggagaaactcttcgccgtcctggttcgctacgtgagccagagaaaggcgcaggtg
tacagggagatggcggtagctgtcctctcccacctggcacagggggaccccacggcggca
cgggccatcgccatgcagaaaggcagtgtggggaacttggtagccttcctagaggacggc
gtcagcatggcgcagtaccagcagaaccctcacagcttgctgcacatgggacacccccct
atggacccgccaagcgtaaacatgatgtgtcgagcagcgaagggcctgctggcgatggcc
aaagtggaggagaacaagacagagtttgtattgtacgaaaacagattgttagacatctcc
atctcctcagtgctcaacacgggagtggtcgccattatttgccaagttctgttccatttg
ggaaaattatga
DBGET
integrated database retrieval system
