Oryzias melastigma (Indian medaka): 112144939
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Entry
112144939 CDS
T07439
Symbol
taf4a
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112144939 (taf4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112144939 (taf4a)
03036 Chromosome and associated proteins [BR:
oml03036
]
112144939 (taf4a)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112144939 (taf4a)
Coactivators
SAGA/TFTC/STAGA complex
112144939 (taf4a)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
112144939 (taf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
112144939
NCBI-ProteinID:
XP_024125608
Ensembl:
ENSOMEG00000023918
LinkDB
All DBs
Position
LG5:complement(1101016..1112207)
Genome browser
AA seq
825 aa
AA seq
DB search
MASAGHEPGKTLDDAGDRVTLLPNHSGKVGSYSAQTFNGSQTMNSHNAGSAAPAEGTTVT
GAAGTPTVSSGAALSKGLLGATVPPSSGGVIQTPLLTSDGVAAAAQAASQAPGPTVTLVR
PPMQTPGSSVTLNGNNSVNSADGSSTTEQAGVALANNGQPCNAGSGSAGTHIIKAEPPTT
IIQSAPQPAGTPSVVSAPQIPAMVAGGIRAPNPQMLAPRLPQPSPGQPSVHNIQLPAGMV
LVRSESGQLLMIPQQALAQMQAQAQGGMAPRPSTPTNMPLGQSPGNTIISRQVSPTTIIR
QTCPTPTPLTASTTLHRPPILQSSVGAPRTLSQPAGTSITSVTVSKETLENVKKCKNFLA
TLIKLASSGKQSSETAASVRELIKDLLEGKVEAEEFTSRLYKELNSSPQPYLVSFLKRSL
PALRQLTPDSAAFIQQSQHPQPASGPASSSSCSSSTVVQGSPAPRLAAPVIKPQLQPATN
KSGNTVPLLVQSQQRTMLRPQVTTATSSMMAVRNQVPARIILGQQQVQLKELQPVPLRPD
GTLVSKQAFAAALTPALRNKLKEAGGTFKDDDDINDVASMAGVNLSEESANILATNSGLV
GAVTHSCKDEAFLSCAMLQRRMLEIGRKHGVTDLGADVVTFISHATQQRLQNLLEKVSLV
AQQKNINIKESENYEQSSDVRAQLKFFEQLDQLEKQRKEEQEREILLKAAKSRARQEDPE
QLRLKQKAKEMQQQELAQMRQREANLTALAAIGPRKKRKNLDSPSSSASAEGSGTGSSLM
GGAGSSGSRPTRQRITRVNLRDLLFCLEDERFTSRSHFLYKGFLK
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgcgggacacgagccgggcaaaacactcgacgatgccggtgaccgcgtaact
ttgctccccaaccactcggggaaagtcggctcgtactcggcgcagactttcaatgggagc
caaactatgaactctcacaatgcaggaagcgctgccccggctgaggggacgacggtgaca
ggtgccgctgggacaccgaccgtcagcagcggggcagcgctgtcaaaggggctgctcggt
gcgaccgtgcccccctcgtcgggcggcgtcatccagacgccgctcttgacttcggacggt
gttgctgccgcggctcaagctgcgagccaggctccgggacccacagtgacactagtccgg
ccgcctatgcaaaccccgggatcctctgtgactttgaatgggaacaattctgtaaactcc
gctgatggaagcagcaccaccgagcaggcaggtgttgcgctggcaaacaatggccagccc
tgcaatgctggctcagggagcgcaggtacacacattataaaagcagagccccccacaacc
attatacaatcagcaccgcagcctgcggggacccccagcgtggtgagcgcaccccagatc
cccgccatggtagctggcgggatccgggctccgaaccctcagatgttggccccaagactc
ccccagccctccccgggacagcccagtgttcacaacatccagcttcctgcgggaatggtg
cttgtgcgcagtgagagtggacagctgctgatgattcctcagcaggcccttgctcaaatg
caagcccaggcccagggaggcatggccccccggccttctacacccactaatatgcctcta
ggccagtccccaggaaacacaatcatcagtaggcaggtgtctccgaccaccataatccga
cagacctgtccaactccaacgccactcacggcttctaccactcttcacaggcctcccatc
ctgcagagctcagttggggccccgaggactctcagccagccagctgggaccagcatcacc
tcagtgacagtgagcaaagaaacgttggagaacgtgaagaaatgcaagaacttcctggcg
acactgatcaagctggcctccagcgggaagcagtcgtcggagactgcagccagcgtgagg
gagctgatcaaagacctgctggaaggcaaagtggaagcagaagagttcaccagcagattg
tacaaagagctcaactcctcaccccaaccgtaccttgtgtctttcctcaagagaagcctc
ccagccttaaggcagctcaccccagactcagcagctttcatccagcagagtcagcatcct
cagccagcctcaggtccggcgtcctcctcctcttgctcctccagcactgtggttcagggg
agcccagccccacgcctcgctgctccagtcatcaaaccccagctccaaccagctaccaac
aagtcaggaaacaccgtccctctgctcgtccagtcccagcagagaactatgctgaggcct
caggtcaccacagcgacctcctccatgatggcggttaggaatcaggttcccgctcgcatc
attctgggacagcagcaggtccagctgaaggagctgcagccagttcccttgaggccagac
gggactctggtctctaaacaagccttcgctgcagcattgaccccggccttgaggaacaaa
ctgaaggaggcggggggcacgttcaaagatgatgacgacatcaacgacgtggcctccatg
gctggagtcaacctctcagaagaaagcgctaatatcttagccaccaactctgggctggtc
ggtgcagtgacgcattcctgtaaggatgaagccttcctgtcctgcgccatgctgcaaagg
aggatgttggagatcggaaggaagcacggagtcacagacctgggcgcagatgttgtgacc
ttcatctcccacgctactcagcagcgacttcagaacctgctggaaaaggtttctttggtt
gctcagcagaaaaacatcaatattaaggagagtgagaactacgagcagagcagcgacgtt
cgtgcgcagctgaagttctttgagcagctggatcagttggagaagcagcgaaaagaagag
caggagagggagatcctgctgaaggcggctaagtctcgagctcggcaggaggatccggag
cagctgcgtctgaagcaaaaagcaaaggagatgcagcagcaggagctggctcagatgagg
cagagggaggccaacctcacagctctggcagccatcggccccaggaagaagaggaagaac
ctggactccccgtcctcctctgcctcagccgagggatccggaacaggctcctccctgatg
ggcggggctggatcgtcgggctccagacccacacggcagcgcatcacacgcgtcaatctc
agggacctgctcttctgtctggaagacgagaggtttaccagtcgctcccattttctctac
aagggctttctgaagtag
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integrated database retrieval system
