KEGG   Oryzias melastigma (Indian medaka): 112144979
Entry
112144979         CDS       T07439                                 
Symbol
rrp9
Name
(RefSeq) U3 small nucleolar RNA-interacting protein 2 isoform X1
  KO
K14793  ribosomal RNA-processing protein 9
Organism
oml  Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:oml00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:oml03009]
    112144979 (rrp9)
Ribosome biogenesis [BR:oml03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    112144979 (rrp9)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_EML WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_SCAP ANAPC4_WD40 Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_IP5PC_F Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_DCAF12 Beta-prop_Vps41 PEP5_VPS11_N Beta-prop_HPS5 Beta-prop_RIG_2nd Beta-prop_WDR75_2nd Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_RIG_1st WDR54 VPS11_N WD40_like
Other DBs
NCBI-GeneID: 112144979
NCBI-ProteinID: XP_024125683
Ensembl: ENSOMEG00000002267
LinkDB
Position
LG5:complement(29981044..29988306)
AA seq 485 aa
MSSSFFIKSNVASQSAKKGKNTAGLKRKVGGGADGKNKLRAKKPSNKHNEEISSESETEG
PPVSKKRQPKQDVGYDETPQEKKLRLAKLYLEQLKDEEEKKAEDEPLETELIAGRLQEEV
LEQQGKLQRFIAKELIAPDPTDIRVLRGHKLPITCLVLTPDDKFIFSAAKDCSIIKWDIA
SGKKVHKIPGGRKGTEERHVGHTAHILCMAVSSDGKYLASGDMNKLIMIWEGDTCKHLYK
FTGHKAPVSGLSFRKGTHDLYSASHDRSVKVWNVDENAYVETLFGHQDAITGLDCLSRER
CVTAGGRDGTVRVWKIAEESQLVFHGHEGSIDCIQLINEEHMITGADDGSVSLWSVNKKK
PLSTVKQAHGCHGDAGLEQPHWVSSVAALQNSDTVASGASGCSHNSLVNVWKCGQHYRGL
ELLFSVAVPGFVNSLKFSSSGHFLVAGVGQEHRLGRWWRLKEAKNGIFIIPLKRKPNSEE
PNSTQ
NT seq 1458 nt   +upstreamnt  +downstreamnt
atgtcttcttcattctttataaagtcaaacgttgcctcccagtcggcaaaaaaggggaaa
aatacagcaggactcaaacgaaaggttggtggtggtgcagatgggaagaataaattacga
gcaaagaaaccgagcaacaaacacaacgaggagatttccagcgagtctgaaacagaaggc
cccccagtatcaaagaagaggcaacccaaacaagatgttggttatgacgaaactccccag
gagaagaagctcagattagccaaactttacctggaacagctaaaggatgaggaggaaaag
aaagcagaagatgaacccttggagacggagctgatcgctggaagacttcaagaagaagtg
cttgaacagcagggaaaactccaacggtttattgccaaagagctcatcgctccagatcca
acagacatccgggtgttaagaggacacaagcttcccattacttgcctggtcttaacccct
gatgacaagttcatcttttctgctgccaaagactgctccatcatcaaatgggatattgct
agtggcaagaaggtgcacaaaataccaggtggcaggaaggggacggaggaacgccacgtc
ggacatactgctcacattctgtgtatggccgtttcatctgatgggaaatacctggcctct
ggagacatgaacaaactcatcatgatttgggagggagacacttgtaaacatctgtataaa
tttacaggacataaagctcccgtgtcgggtctgtcattcaggaagggaactcacgatttg
tacagtgcttctcacgatcgctcagtcaaagtgtggaacgtggatgagaacgcttatgta
gaaaccctttttggtcatcaggacgccatcaccggactggactgtttgagccgtgagcgt
tgtgtgacggctggggggcgggacggcaccgtcagagtgtggaagatagcagaggagtct
cagctggtgtttcacggacacgaagggtcgatcgactgcatccagctgataaacgaggag
cacatgataacgggagcagacgacggctctgtgtctctttggagcgtcaacaagaagaag
cctctcagcaccgtgaagcaggctcacggttgtcatggcgacgcggggctggagcagccg
cactgggtgtcctctgtagcggcccttcagaactcggatactgttgcctcaggtgcctct
ggctgttctcacaactcactggtgaacgtgtggaaatgcggccagcattatcgtgggcta
gagcttttgtttagcgtggcggtgcctggttttgtcaacagtctaaagttttccagctct
ggtcattttctggtggcgggagttgggcaggagcacaggttgggtcgatggtggagacta
aaggaagccaaaaacggaatcttcataattcctctgaaaagaaaaccaaattcagaggaa
cccaactcaacccaataa

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