Oryzias melastigma (Indian medaka): 112144999
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Entry
112144999 CDS
T07439
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112144999
Spliceosome [BR:
oml03041
]
Common components
Common spliceosomal components
General mRNP proteins
112144999
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
RBD_DEAH11
RRM_7
Motif
Other DBs
NCBI-GeneID:
112144999
NCBI-ProteinID:
XP_024125722
Ensembl:
ENSOMEG00000001685
ENSOMEG00000001692
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All DBs
Position
LG5:complement(15010361..15017811)
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AA seq
519 aa
AA seq
DB search
MADDLDIEALLEAPFRKEDKSQSPNGQEDRSKSLVLIGSCRSEKKRRSRSRSRDKKRSRS
RDRKRSRSRERKDSRSKDKRRSRSRERRRSRERGGRYKDHHKHRRWSKSKSPVKKEKSPI
RMPNDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAY
IEFVEASSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAAANNLQRGMTGPMRLYVGSLH
FNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAG
RPMKVGHVTERTDPSMAPSILDNDELERSGIDLGTTGRLQLMARLAEGTGLQIPPAAQQA
LQMSGAIAIGAMAAVSGNACHFPAQNAAMNPSLNVNMNSGALNLPSQPLATHCFQLSNMF
NPSSEHTFGWEVDIQRDVIEECNKHGGVVHIYVDKNSSEGNVYVKCPSIPAAMSAVNALH
GRFFGGKMITAAYVPLPTYHKLFPESVTATQLLVPPLRR
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgacctggacatcgaggcgcttctggaagctccgtttagaaaggaggacaag
agccagagtccgaatggacaggaggatcgtagcaagagcctggttttgattggctcttgt
agatctgagaagaagaggcgcagccgcagtcgcagccgggacaagaagcgaagccgcagc
cgagacaggaaaaggagtcgcagccgggagcgcaaagacagccggagcaaagacaagaga
agaagccgcagccgagagcgacgccgcagccgagagcggggagggcgctacaaagaccat
cacaagcaccgtaggtggtcaaagagtaagagcccggtcaagaaagaaaaaagtccaatc
aggatgccgaacgacaacctgactccagaggagcgtgacgcccggaccgtcttctgcatg
cagctggcggcacgtatccgaccacgagacctggaggagtttttttctgcagtgggaaag
gtgcgagatgtacggatgatctctgacagaaactcgcgcaggtcgaagggaatcgcttac
atcgagtttgtagaggccagctctgttcctttggccattgggctgacgggacaaaggctg
ctgggagtccccatcattgtccaggcgtcccaggcagaaaaaaaccgagctgccgctgca
gctaataacctgcagcgaggaatgactggacctatgaggctgtatgtgggctcgctgcac
ttcaacatcaccgaggacatgctgcgaggaatctttgagccgtttggacggattgagaac
atccagctgatgatggacagtgagaccgggcgctctaaaggctacggcttcatcacattt
tcagatgcagaatgtgctaaaaaagctctggagcagctgaacggctttgagctggcaggt
cgacctatgaaggtgggtcatgtgaccgagcgaaccgacccctccatggctccatccatt
ctggacaacgatgagctggagcgcagcggcatcgacctgggaaccacagggaggctgcag
ctcatggcccggctggcagagggtaccggcctgcagatccctcctgcagctcagcaagct
ctccagatgagcggcgccatcgcaattggggccatggctgccgtctctggtaatgcatgc
cattttccagctcaaaatgctgccatgaatccatctctcaacgtcaacatgaactctggc
gctctgaatcttccctctcagccgctcgccactcactgcttccagctgtctaacatgttc
aaccctagcagtgagcacacattcggttgggaggtggacatccagcgggatgtcattgag
gagtgcaacaaacacggaggcgtcgtccacatctatgtcgacaagaactcttcagaggga
aacgtttatgtcaaatgtccgtcaatccctgctgccatgtctgcagtcaacgctctgcac
ggaagattctttggtggtaagatgatcactgcagcgtacgttcccctgcccacctaccac
aaactcttcccagagtcggtcactgccacacagctgctggtccctcctttgcgacgatga
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