Oryzias melastigma (Indian medaka): 112145156
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Entry
112145156 CDS
T07439
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04510
Focal adhesion
oml04512
ECM-receptor interaction
oml04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112145156 (col2a1b)
04518 Integrin signaling
112145156 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112145156 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oml00536
]
112145156 (col2a1b)
Glycosaminoglycan binding proteins [BR:
oml00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112145156 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
112145156
NCBI-ProteinID:
XP_024126003
LinkDB
All DBs
Position
LG5:complement(26598044..26648074)
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AA seq
1491 aa
AA seq
DB search
MISFLDSRTVLLLAATQLCLLAVVRCQLDGKQDDDFSCVQDGQRYNDKDIWKPEPCRICV
CDSGSLLCDDITCEELKDCPKPEIPFGECCPICPSDEPTRPGVPGIKGQKGEPGDITDVV
GPRGPSGPMGPPGEQGPRGPRGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGSAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEPGEPGQS
GPMGPRGPPGAPGKPGEDGEAGKPGKSGERGPSGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGSVGSKGEAGAPGESGAPGPMGPRGLPGERGRPGSTGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIAGFKGEAGPKGEIGPP
GLQGAPGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGHKGAPGERGPP
GASGAKGATGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLLGAPGLRGLPGKDGETGSAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGPAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGSRGAQGPQGLQGMPGERGGAGIPGPKGDRGDVGEKGPE
GAAGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGSDGQPGTKGEQGEPGQKGEAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPSGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDPGPSGRQGDAGLRGPAGAPGEK
GDAGEDGPPGPSGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGPGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSAGIKGDRGNTGPAGASGAPGAPGAP
GPVGPTGKQGDRGEPGPQGPAGPAGPAGARGMPGPQGPRGDKGEAGEGGERGQKGHRGFT
GLQGLPGPPGQAGDQGATGPAGPAGQRGPPGPVGPAGRDGANGLAGPIGPPGPRGRSGDT
GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQPEKSPDPLRYMRADQAAAGNLRQHDAEV
DATIKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTVDAIKVFC
NMETGESCVYPNPSSIPRKNWWSSKSRSKHVWFGETMNGGFHFNYGDESLAPNTASIQMN
FLRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTGHTGKWGKTVMEYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGPVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgattagttttttggattccaggactgtgctgctacttgcagcaacccaactttgttta
ttagccgttgtgagatgtcaactggatggaaagcaggatgatgactttagctgtgttcaa
gatggacagcgttacaatgacaaggatatatggaaaccagagccttgtcgcatctgcgtg
tgtgactctggatccctcctgtgcgatgatattacctgcgaggagctaaaagactgcccc
aaaccggaaatcccattcggagagtgttgccccatctgcccctctgacgagcctacgcgc
cctggagtacctggaattaagggccagaagggtgaacctggtgacattacagatgttgta
ggaccaagaggaccatctggcccaatgggcccaccaggagagcaaggcccccgcggacca
agaggagacaaaggagagaaggggagtcctggtccacggggcagagacggcgagcctggc
acccctggaaaccctggaccccctggacctccaggaccaaacggaccccctggccttggt
ggaaacttcgctgctcagatggcgggcggttttgatgagaaagctggctctgcgcaaatg
ggtgtgatgcaaggaccaatgggccccatgggacccagaggaccacctggccccacagga
tcacctggcccacagggtttccaaggcaacccaggagaaccaggagagcccggacaatct
ggccccatgggtccccgcggccctcctggagctcctggaaaacccggtgaagacggtgaa
gctggaaaacctggtaaatcaggagagcgtggaccttctgggccacagggcgctcgagga
ttcccaggaactccaggtttgcccggcatcaaaggacacagaggttatccaggtcttgat
ggtgcaaagggagagactggctctgttggttccaagggagaggctggtgctcctggagag
agtggtgcacctggaccaatgggaccgcggggtttgcctggcgagagaggccgccctgga
tccactggagctgctggcgcacgtggaaatgacggcctacctggccccgccggtcctcca
ggcccggttggtccagctggagctccaggcttccccggttcccccggttccaagggagag
gcggggccaactggtgcccgaggacctgagggagctcaaggcccccgtggagagtccggt
actcccggatcacctggaccctccggcgcttctgggaaccctggaactgatggcattcct
ggagctaaaggatcagctggtgctcctggtatcgccggtgctcctggtttccctggacct
cgagggcctccagggcctcagggagcaactggacctctagggcccaaaggaacatctgga
gatccaggaattgcaggttttaagggagaagctggacctaaaggggaaattggaccccca
ggtcttcagggagctcctggcccccaaggagaagagggcaagaggggacccagaggtgag
cctggtgctgctggaccactgggacctccaggagaaagaggagctcctggaaacagaggt
ttccctggtcaagatggtctcgctggacacaagggagccccaggtgagcgcggtccccct
ggcgccagtggagccaagggggcgacgggtgaccctggccgtcctggagagtctgggctt
cctggtgccagaggcctgactggtcgccccggtgatgctggaccacaaggcaaagttgga
ccatctggagccccaggtgaggacggtcgtcccggaccccccggtcctcaaggggcccgc
gggcagccaggtgtcatgggattccccggaccgaagggagcgactggtgaacctggaaag
tctggagagaaaggacttcttggagctcctggtctgagaggtctgcctggaaaagatgga
gaaacgggatctgctggaccacctggcccggctggtcctgctggggaaagaggagagcaa
ggacagcccggtccgtcgggcttccagggacttcctggacccccgggccctcctggagag
ggaggcaagcctggagaccagggtgttcctggagagggcggagctgctggtgccactgga
ccccgaggagagcgtggtttccctggagaaagaggtcctgctggtcctcaaggtctgcag
ggacccagaggtctacctggaactcctggaactgatgggcccaagggagcaattggcccc
gctggttctcgcggagctcaaggaccccagggcctgcagggaatgcctggagaaagagga
ggcgctggtattcctggacccaaaggagacagaggagatgttggagagaaaggacctgaa
ggtgctgccggcaaagatggtgcccgaggtcttactggtcccatcggtcctcctggtcct
gggggtccaaatggagaaaagggtgaatctggacctgctggtccttctggagctcctggt
actcgcggtgctcctggtgacagaggagagaccggacctcctggaccggctggtttcgct
ggaccgcctggttctgatggtcagcctggaaccaagggagagcagggagagccagggcag
aagggagaggctggtgcacctggaccccaaggaccctctggtgctccaggacctgcaggg
cctactggtgtttctggacctaaaggcgctcggggtgctcagggaccctctggagccact
ggtttccctggagcggccgggcgagtaggacctcctggtccaaatggcaatcctggacct
gctggtcctgctggccctcctggtaaagatggacccaaaggtgtgagaggagaccccgga
ccttcaggcaggcaaggcgatgctggactccggggtcctgctggggctcccggagagaaa
ggagacgccggggaggatggtcctccaggcccttcaggtccctcggggcctcaaggactg
gctggtcagcgcggtattgttggtctgccgggacagcgaggagagagaggtttccctggt
ttacctggaccttctggtgagcctggaaagcagggagctcctggtggtcctggagaccgt
ggaccccctggacctgttggaccacctggacttactgggcctgcaggagaacctggtaga
gagggcaatcccggatctgatggacctcctggcagagatggatctgctggaatcaagggt
gatcgtggaaacactggccctgcaggtgcctctggcgccccaggggctccgggggctcca
ggccctgtgggtcccactggtaaacagggagacagaggagagccaggtccacaaggacct
gccggacctgcaggacccgccggagctagaggaatgccgggaccacaaggacctcgcggt
gacaagggtgaggctggagaaggcggtgagaggggacaaaagggacaccgaggtttcact
ggtctgcagggtctcccaggaccaccaggtcaagctggagaccagggagcaactggacct
gctgggcctgctggacaaagagggccgcctggacctgtaggcccagctggcagggatggt
gcaaatggtctagcgggacccattggacctcctggacctcgaggtcgcagtggagacacc
ggtccagctggtcctcctggaaacccaggaccccccggtcctccaggtcccccaggcccc
ggcatcgacatgtctgcgtttgctggtctgggtcagcctgagaagtctcccgatcccctc
cggtacatgagggccgaccaagctgctgctggaaacctccgtcagcacgatgcagaggtt
gacgctacaatcaaatctcttaacaaccagattgagaacatccgcagcccagaggggtcc
aagaagaaccctgcccgcacctgcagagatctgaagctctgtcatcctgactggaagagc
ggtgattactggattgatccaaaccagggatgcacggtggatgcaatcaaggtcttctgc
aacatggagacaggcgagtcctgtgtctacccgaacccttccagcattcctcgcaagaac
tggtggtcaagcaagagcagaagcaaacacgtctggtttggagagacgatgaatggagga
ttccacttcaattatggcgatgagagcttggcacccaacaccgcttccattcaaatgaac
ttcctgaggctgctgtccaccgaggcgtctcagaacctcacgtaccactgtaagaacagc
gtggcctacatggacgcctcaacgggcaacctaaagaaggccgtgctgctgcagggctcc
aacgacgtggagatcagagctgagggcaacagccgctttacctacagcgtcatggaagac
ggctgcacgggacacacaggaaaatggggcaagacagtgatggaatacaggtcgcagaag
acctcacgcttgcccattgtggacattgcccccatggatatcggtggagcggaccaggag
tttggcgtcgacgtgggaccggtctgcttcttgtaa
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integrated database retrieval system
