Oryzias melastigma (Indian medaka): 112145161
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Entry
112145161 CDS
T07439
Symbol
rbbp5
Name
(RefSeq) retinoblastoma-binding protein 5 isoform X1
KO
K14961
COMPASS component SWD1
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oml03036
]
112145161 (rbbp5)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
112145161 (rbbp5)
COMPASS/SET1 complex (yeast)
112145161 (rbbp5)
MLL-HCF complex
112145161 (rbbp5)
MLL3/MLL4 complex
112145161 (rbbp5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML_2
WD40
WD40_CDC20-Fz
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WDR55
ANAPC4_WD40
Beta-prop_IFT140_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_LRRK2
Beta-prop_IFT122_1st
Beta-prop_NUP159_NUP214
Beta-prop_SCAP
WDR54
Beta-prop_WDR75_1st
Beta-prop_WDR11_1st
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
112145161
NCBI-ProteinID:
XP_024126010
Ensembl:
ENSOMEG00000004058
UniProt:
A0A3B3BCA9
LinkDB
All DBs
Position
LG5:complement(36087078..36101153)
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AA seq
562 aa
AA seq
DB search
MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAK
IISAHIHPVCSLCWSRDGHKLVSASTDNIVSQWDVLTGDCDQRFRFPSPILKLQCHPRDM
DKVLVCPMKSAPVLLTLSDSKHVVLPVDDDSDLNVVAAFDRRGEYIYTGNAKGKILVLNT
DTQELVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPE
PMQKLQDLVNRTPWKRCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLD
VAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKS
EPEQTGADAAEDEEVDVTTVDPIVAFCSSDEEMEDLKALLYLPIAPEVEDPEENPFGPPP
DASVQAATPEDPLAGSDKKQRQLSSEGGPTKKKARTTVIELQGVPSDEVHPLLGVKGDGK
SKKKTAGRPKGSKGKDKDFPFRPKPYKGERPSFPVGAEALGSSAPGGGLGGGGGMKCRAE
GVLATGTLVSQPYKQHDVGGMD
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggaactgctcgagtcgtttgggcagaactatccagaggaggcggatggcact
ctggactgcatcagcatggcgctcacatgcaccttcaaccgctgggggaccctgctggct
gtcggctgcaatgacgggcgcatcgtcatctgggacttcctcacgagggggatcgctaaa
atcatcagtgcacacatccatcccgtctgctctctgtgctggagtcgggacggacacaaa
ctggtgagcgcctccacagacaacatcgtgtcccagtgggacgtcctgaccggagactgc
gaccagaggttccgcttcccttcacccatcctgaaactgcagtgccaccccagagacatg
gacaaagttctggtgtgtccgatgaagtctgcgccggtcctgctgacgctgtccgactct
aaacacgtggtgctgccggtggacgacgactcggacctgaacgtggtggcagcttttgac
agacgaggagagtacatttacaccggcaatgctaaaggaaagattctggtgctaaacaca
gacacacaggagctggtggcttcattcagagtgaccacaggaaccagcaacacaaccgcc
atcaagtccatcgaatttgcacggaagggcagctgcttcctcataaacacagcagatcgg
atcatcagagtgtacgatggcagagagatcctgacctgtgggagggacggagagccagaa
cccatgcagaagctgcaggacctggtcaacaggactccatggaagcgctgctgtttctcg
ggagacggggagtacatcgtggccggttccgcccggcagcacgctctctacatttgggag
aagagtatcggcaatctggtgaagatcctgcatggaaccagaggagagctgctgctggac
gtcgcttggcatccagttcgaccgattatcgcctccatctccagtggagtggtgtccatc
tgggctcagaaccaagtggaaaactggagcgcctttgctccagactttaaagagctggat
gagaacgtggagtacgaggagcgggaatctgagtttgacattgaagatgaagacaaaagt
gaaccggagcagacgggtgcagatgcagcagaggatgaagaggtggatgtgaccactgtg
gatcccattgttgctttttgcagtagcgatgaggagatggaggacctcaaggctctgctg
tacctgcccatcgctccggaggtggaggatccagaggaaaaccccttcggtcctcctcct
gacgcttcggttcaggccgccacgccggaggatcctctggccggcagtgacaagaagcag
cggcagctgtcctcagaaggaggtcccaccaaaaagaaggcgcgcaccactgtgatcgag
ctgcagggggtgcccagtgatgaggtgcaccccctgctgggagtaaagggggatggcaag
tccaagaagaagacagcaggtcgtcccaaaggttccaaaggtaaagacaaagacttcccc
ttcaggcccaagccctacaagggcgaacggccctcctttcccgtgggggccgaagcactg
ggctcctcggccccaggaggaggattgggtggaggaggagggatgaagtgcagggcagag
ggggtactggccacaggaactctggtatctcagccgtacaagcagcatgacgttggaggg
atggactga
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integrated database retrieval system
