Oryzias melastigma (Indian medaka): 112145499
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Entry
112145499 CDS
T07439
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112145499 (pdzrn3b)
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112145499 (pdzrn3b)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
112145499 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-TRAF
zf-C3HC4_3
zf-RING_5
Sina_ZnF
zf-C3HC4_4
Prok-RING_4
PDZ_Tricorn
zf-rbx1
zf-RING_6
RING_XB3-XBAT31
TRAF2_zf
IBR_1
Motif
Other DBs
NCBI-GeneID:
112145499
NCBI-ProteinID:
XP_024126536
Ensembl:
ENSOMEG00000001216
UniProt:
A0A3B3CXP6
LinkDB
All DBs
Position
LG5:4925478..5035795
Genome browser
AA seq
1040 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEEPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRVS
ARELNHVLPLKNLILKLEIKCDHHARGCDAVVTLQHLAEHAETCDFSPAKCRNRGCTEEL
RLRDVDAHMRETCDYRPVGVCESGCGLVLTLREQRLKSHCCVRALKAHNSALHCRLIILD
RECKKQAIRANQREKALLGQLSAVHGELQMTALKYQKKFTEYSERIDSLTRTVASSCKED
EPQSVTVVLLREAGSLGFNIVGGRPCADDKDGASNEGIFVSKIVESGPADKEGGLQVHDR
IIEVNGKDLSKTTHDQAVEAIRTAKEPIMVKVLRRAPYPKLVGPILDTQVSDAGTQTDIT
LQHIMGVNTMPSSSPQMKELEAYLLPEEHPPEHGYFDPNDFLEALQPDMERDELEYEEVD
LYRANIQDKLGLTVCYRTDDEDEAGIYISEVDPNSIAAKDGRIREGDKIIQINGIEIQNR
EDAVALLTSESNQNISLLVARPEIQLDESWLDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKLEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLADDQMTTASNTL
GSCRKLTFSQDTLGSMDLPFGCESLMSADYTDAELLGIPADECERFRELLELKCQMRGGG
AQGQPSLGAGAEGQDQEGVDKELELLNEELRSIELECLSIVRAHKMQQLREQCRESWMLH
NSGFRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRC
AENPAGPSGSTSRMLKPVLSPVQEACGSSRSKGSSKDSDGALPVESKERRESGKSSQSRS
PYKHAHIPAHAKHYQSYMQLIQQKSAVEYAQSQMSLVSICRDPLSPIDLEPKMEWKVKIR
SDGTRYITKRPVRDKLLKERAIRIHEERSGVTTDDDAISELKMGRYWSKEERKQHAVRAK
EQKQRREFMKQSRADCLKEQLGPEDKKEPNIIELSHKKMMKKRNKKIFDNWMTIQELLTH
GTKSPDGTRVYNSILSVTTV
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagctggaccgcttcaaggggaccgtggacccggacttcaagtgcaacttg
tgcaacaaagtgctggaggagccgctgacgacgccgtgcggccacgtcttctgctccggc
tgcgtgctgccctgggtcgtgcagcagagcagctgccccgtcaagtgtcagcgggtctcc
gcgcgggagctgaaccacgtcctgcccctgaagaacctgatcctgaagctggagatcaaa
tgcgaccaccacgccaggggctgcgacgcggtggtgacgctgcagcatctggccgagcac
gcggagacgtgcgacttctccccggccaagtgccgcaatagaggatgcacggaggagctg
cgcctgcgggacgtggacgcgcacatgcgggagacgtgcgactacaggccggtgggggtc
tgcgagagcggctgcggcttggtgctcaccctgcgggagcagcggctgaagagccactgc
tgcgtgcgcgccctgaaggcgcacaacagcgcgctgcactgccgcctcatcatcctggac
cgagagtgcaagaagcaggcgatccgggccaaccagcgggagaaggcactgctgggacag
ctgtccgccgtgcacggagagctgcagatgacggcgctcaagtaccagaagaagttcacg
gagtacagcgagaggatcgactccctcaccagaaccgtggcgtcctcctgcaaggaggac
gagccgcagagtgtgacggtggtcctcctgcgcgaggctggatctcttggatttaacatc
gtgggaggacggccgtgcgcggacgacaaagatggcgcatcgaacgaggggatttttgtg
tccaaaatagtggagagcggtccagcagacaaggaggggggccttcaagttcacgacagg
atcattgaggtcaatggcaaggatctctccaaaaccacccatgaccaggcggtggaggcc
atccggaccgccaaggagcccatcatggttaaagtgctgcgccgggccccttacccgaaa
ctggtcggccccattcttgacacccaggtctcagacgcggggacccagaccgacatcacc
ctgcagcacatcatgggcgtcaacacaatgccttcatcctcaccccagatgaaggagctg
gaggcatacctgctgccagaagaacaccctcctgaacacggatactttgaccccaacgat
ttcctggaggccctgcagccggacatggagcgtgacgagctggagtacgaggaggtagac
ctgtaccgagccaacatccaggacaagctgggtttgacggtttgctacaggacggacgac
gaggatgaggcaggcatctacatcagcgaggttgatccgaacagcatcgctgccaaagat
ggccgaatcagagagggggacaaaatcattcagatcaacggcatcgagatccagaatcgg
gaagatgccgtcgccctgctgaccagcgagagcaatcagaacatctccctgctggtggcc
aggccggaaatccagctggacgagagctggctggatgacgacaggaacgacttcctggat
gatctccacatggatatgctggagcagcagcatcatcaggccatgcagttcactgccagc
atgctgcagcagaagaagctggaggaggacggcggcaccacagacacggctacgctgctt
tccaaccaccacgagaaggacagcggcgtcggtcgcaccgacgagagcacccgaaacgac
gagagctctgagcaggagaacctcgccgatgaccagatgaccacggcctccaacactctg
ggcagctgccggaagctgaccttcagccaggataccctcggcagcatggacctgcccttc
ggatgcgagtcgctcatgtcggcggactacactgacgccgaactcctgggcattcctgca
gacgagtgcgagcgtttcagggaacttctggagctgaagtgtcagatgaggggcggtgga
gcccaggggcaacccagcctgggagccggggcagaagggcaggaccaggagggtgtggat
aaggaactggagctgctgaacgaggagctgcgcagcatcgagctggagtgtctgagcatc
gtccgggcccacaagatgcagcagctgagggagcagtgccgagagtcgtggatgctccac
aatagcggcttccgaaactacaacacgagcatcgatgcccgccgccacgaactgtccgac
attaccgagctgcctgagaagtccgacaaggacagctccagcgcctacaacaccggcgag
agctgcagaagcacccctctcactctagaactgtcccccgataactcgctccgccgctgt
gccgagaaccccgccggcccgtccggctccaccagcaggatgctgaaacccgtcctgtct
cctgtccaagaggcctgcggctccagccggagcaaaggctcctccaaggattccgacggc
gccctgcctgtggagagcaaggaaaggagagagtccggcaagagcagccagtcccgctca
ccgtacaaacacgcccacatcccggcccacgccaagcactaccaaagctacatgcagctg
atccagcagaagtccgccgtggagtacgcccagagccagatgagtctggtcagcatctgc
cgcgaccccctcagccccatcgacctggagcccaagatggagtggaaagtgaagatccgc
agcgacggcacccgctacatcaccaaacggcccgtccgggacaagctgctgaaagagcgc
gccatacgcatccacgaggagcgcagcggcgtgaccacggacgacgacgccatcagcgag
ctgaagatgggccgctactggagcaaggaggagcgaaagcagcacgccgtgcgcgccaaa
gagcagaagcagcgccgggagttcatgaagcagagccgagccgactgcctgaaggagcag
ctgggccccgaggacaagaaagagcccaacatcatcgaactcagccacaagaagatgatg
aaaaagaggaacaagaaaatatttgacaactggatgaccattcaggaactgctgacccac
ggcaccaagtcaccggacggcactagagtgtacaactcaatcctgtctgtgaccacggtc
taa
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integrated database retrieval system
