Oryzias melastigma (Indian medaka): 112145609
Help
Entry
112145609 CDS
T07439
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oml03036
]
112145609 (chd5)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
112145609 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
ResIII
PHD-1st_NSD
HDA2-3
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
112145609
NCBI-ProteinID:
XP_024126722
Ensembl:
ENSOMEG00000014929
LinkDB
All DBs
Position
LG5:5810930..5880929
Genome browser
AA seq
1982 aa
AA seq
DB search
MPGSLSNEEEGQDDMDYEEELPDEDDDGERSAVPLTPLASFFSDEDSLREQKRKKPKKMR
EGKISTVKKRKKEGGLHIRLDSDLETSEVEDERERLDIGSESESSMYVTMKKKKKKPREK
KEKKPRKKKRDGEEDEEGDDDGNMKEPKSSSQLMHEWGLEDVQYGFTEDDYKTITNYKAF
SQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVTVAQ
PTSVSCSQPSSQQSPIKKAKTKEGKGPGVRKKSKAVKDVKKKAKPKKTKSKPGQSGKKKK
VSSSEEDFLEESDFDDISIHSASVLSDTSGAANKKRARRGRKKRKKEDGDGYETDHQDYC
EVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDEEEDEEEP
AGEEEDDHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLKG
KVQKILHWTWGEPPLPAEPPAGPDGKPSDPLSNPPLKGRPEREFFVKWAGLSYWHCSWVS
ELQLELYHTVMYRNYQRKNDMDEPPPYDYGSGEEEINNEKRKSKDPQYAVMEERFYRYGI
KPEWMVIHRILNHSFDKDGDVHYLIKWRDLPYDQCTWEVDDFDVPEYDTHKPSYWDHREQ
ILGEDQRPLVVRKGKKLRDDHQKREAPPDAPIIDPTIKFEHQPWYINATGGTLHPYQLEG
LNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWERE
FEMWAPDFYVVTYTGDKDSRAIIRENEFTFEDSAVKSGRKVFRMKKDTPIKFHVLLTSYE
LITIDQAILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELF
HLLNFLTPDRFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELI
VRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAP
VLPNGSYDGNLLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYKY
ERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPHND
IQAFSRAHRIGQNKKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSKQ
ELDDILKFGTEELFKDEMEAARTMGDNKDGEEGSVIHYDDDAISKLLDRSQDATEDTDIQ
NMNEYLSSFKVAQYVVKEEDGEEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNL
GKGKRIRKQVNYNDTTQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQLK
NEKDKPLPPLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSE
REFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVN
GKLSSPDLIPIGIELKKLTESVSSDPNTPAPASPIATRPSTPIPQEKTESLVGGCEDKDS
TEQDGRKGPEQEVTDAESAPEKASEGEDGIDDKTSEDRSRAESPPTKTEPPEQPSAHPAL
KADSKETVKSSEKRDSASPPDKNEDKENKPDETKSDDPLESRLNGDKDALEEMEESRKED
KNGFKAKFMFNIADGGFTELHTLWQTEERAAMSSLKMHDIWHRRHDYWLLAGIVTHGYAR
WQDIQNDPRYAILNEPFKSEMHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMT
QDPSHPAMALNTRFTEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADV
TRLPNMLSRIPPVSARLQMSERSILSRLTSRGGEPPPQTFGQGGFACSQMYGGGFAAGFR
GPGGQPMVNYSQMPLGPYVSVSSNGTALPTSHLDKKSLESLRDVGTPDLKSGKPTDVICI
ED
NT seq
5949 nt
NT seq
+upstream
nt +downstream
nt
atgccggggtcgctgagcaatgaagaggagggacaggacgacatggattatgaagaggag
ctgccagatgaggatgatgacggcgagcgcagcgctgttcccctcacacccctcgccagc
ttcttctctgatgaagactccctcagagaacagaagaggaagaagcccaaaaagatgaga
gaggggaaaatatccacagtgaaaaagaggaagaaagagggaggactccacatccggttg
gacagtgacctggagacgtcggaggtagaggacgagcgggagcgcctggacatcggctca
gagagtgagagcagcatgtatgtcaccatgaagaagaagaagaaaaaaccccgggagaag
aaagagaagaagcccaggaagaagaagagggacggggaggaagacgaggagggcgatgat
gacgggaacatgaaagaacccaaatcctccagccagctgatgcatgaatggggtcttgag
gatgttcagtacggcttcacagaggacgactataaaaccatcaccaactacaaggctttc
agccagttcctgaggcctctcatcgccaagaagaacccgaagatccccatgtcaaagatg
atgacggtgttgggggccaaatggagagagttcagcgccaacaacccatttaagggggcg
tctgccaccgccgtggccgccgccgtggctgctgccgtagaaaccgtcaccgtggctcag
ccgacgtccgtcagctgcagccagcccagctcccagcaaagtccaatcaaaaaagccaaa
accaaagagggaaagggacccggcgtccgcaagaaaagcaaggccgtgaaggatgtgaag
aaaaaagccaagcccaaaaagaccaaatccaagccaggccaaagcgggaagaagaagaag
gtgtcttcgagcgaggaggacttcctggaggagtcggactttgacgacatcagcatccac
agtgcctctgtgctttctgacacctcgggggcagcaaacaagaaaagggcccggcgtggg
cgcaagaaaaggaaaaaggaggacggcgatggctacgagacggaccaccaggactactgc
gaggtctgccagcagggcggggaaattatcctgtgtgacacctgtccaagagcctaccac
ctggtctgcctggaccctgagttggagaaggcccccgaggggaaatggagctgtccacac
tgtgagaaggagggaatccagtgggaggccaaagatgaggaggaggacgaggaggagcca
gcaggagaggaggaggacgaccacatggagttctgtagagtttgtaaagatggaggagag
ctgttgtgctgcgacacctgtccgtcctcctaccacatccactgcctcaacccgcctctt
cctgagatccccaacggggagtggctatgcccccgctgcatgtgtcctcctctcaaagga
aaggttcagaagattttgcactggacgtggggagagcccccgctgccggccgagccgccg
gcaggtcccgacggaaagccctccgatcccctgagcaaccccccgctgaaaggtcgtccg
gagagggagttctttgtgaagtgggcggggctctcctactggcactgctcctgggtcagc
gagctgcagctggagctgtatcacaccgtcatgtaccgcaactaccagaggaagaacgac
atggacgagccccccccgtatgactacggctccggagaggaggagatcaacaacgagaag
aggaaaagcaaagacccccagtatgctgtgatggaggagcgcttctaccgctacggcatc
aaacccgagtggatggtcattcaccggatactcaaccacagttttgataaggacggtgat
gtgcattacttgattaagtggagggacctcccgtatgaccagtgcacgtgggaggtggat
gactttgacgtcccagagtatgacacccataagccttcttactgggaccacagggagcag
atcttaggcgaggaccagcgccccctggtggtgaggaaagggaaaaagctacgagatgac
catcagaagagagaagctcctcctgatgctcccatcatagatcccaccatcaagtttgag
caccagccctggtacatcaacgccaccggagggacgctgcacccataccagctggagggc
ctgaactggctaaggttctcgtgggctcaggggaccgacaccatcctggctgatgagatg
ggactgggaaagacggtgcagacaatcgtgtttctttactcgctgtacaaagagggtcat
tctaaagggccgtttttggtcagtgcccctctgtccaccatcatcaactgggagagagaa
tttgagatgtgggctccggacttctatgtggtgacttacaccggagacaaagacagcagg
gccatcatcagggagaacgagttcaccttcgaggacagtgctgtcaaatcggggcgcaaa
gtgtttcgtatgaagaaagacactcccatcaagttccacgttctgctcacgtcctacgag
ctgatcaccatcgaccaggccatcctgggctccatcacgtgggcctgcctggttgtagac
gaggctcaccgactgaaaaacaaccaatcaaagttttttagaatcctcaatgggtacaag
atttactacaagctgctcctcactgggactcctctgcagaacaacctggaggagctgttc
catctgctgaacttcctcacccctgatcgcttcaataacttggagggcttcttggaagag
tttgccgacatctcaaaggaggaccagatcaagaagctccacgacctgctgggcccgcac
atgctcagacggctgaaagccgacgtcttcaagaacatgccagcaaaaacggagctgatc
gtccgggtggagctcagccccatgcagaagaagtactacaagttcatcctcacacggaat
ttcgaggcgctgaattccaaaggtggagggaaccaggtgtctctgctcaacatcatgatg
gatctgaagaagtgctgcaaccacccgtacctgtttcctgtcgctgctgtggaagctcct
gtgctccccaacggctcctacgacggaaacctgctggtgaagtcctccggaaagctgacg
ctgctgcagaaaatgctgaagaagctcaaagatgaaggtcacagggttctcattttctcc
cagatgacaaagatgctggatctgcttgaggacttcctggagtttgagggttataaatat
gagcgtattgatggcgggatcactggaggccttcggcaggaggccattgaccgcttcaac
gctccgggcgcgcagcagttctgcttcctgctttcaacacgggcgggaggtctcggcatc
aacctggcgagcgccgacaccgtcatcatctacgactcggactggaaccctcacaacgac
atccaggctttcagcagagcgcatcgcattggccaaaacaagaaggtgatgatctatcgc
tttgtgactcggggctccgtggaggagaggatcactcaggtggcgaagaggaaaatgatg
ctgactcacctggtggtgaggcccggtctgggctccaaaacgggctccatgtccaaacag
gagctggacgacatcctcaagtttggaaccgaggagctgttcaaggatgaaatggaggcg
gctcgaacgatgggagataacaaagatggagaggagggcagtgttatccactacgacgat
gatgccatctccaagctgctggaccgcagtcaggatgccaccgaggacacggacatccag
aacatgaacgagtacctgagctccttcaaggtggcgcagtacgtggtgaaggaggaggac
ggagaggaggaggtggagagggagatcatcaagcaggaggagaacgtggaccccgactac
tgggagaagctcctgcgtcatcactacgagcagcagcaggaagacctggcccggaacctg
ggcaagggcaaacgcatccgcaagcaggtcaactacaacgacaccacccaggaggaccaa
gaatggcaggatgatctttcagacaatcagtcggagtactccgtggggtccgaggacgag
gacgaagacttcgaggagcgacctgaagggggacgcagacaatctcgccggcagctcaag
aacgagaaagacaaacctctgcctcctttgctggcccgggtcggaggcagcattgaggtc
ctggggttcaacgctcgccagaggaaagctttcctcaacgccatcatgcgctggggcatg
cctccacaggacgccttcaactcgcactggctggtcagggacctgagagggaagagcgag
cgggagttcagagcctacgtgtccctcttcatgagacatttatgtgagccgggggccgac
ggcgcagagacgtttgctgatggcgttcctcgagagggcctgtcccgtcagcatgttctg
accaggatcggagtcatgtcgctggtcaggaagaaggtgcaggagtttgagcacgtaaac
ggtaagctgagctctcctgatctgattcccatcggaatagagctgaagaagctgacagag
agcgtctcttctgatccgaacactccggcgcctgccagccccattgctacccggcccagc
acccccatccctcaagagaagacagagtctttggtggggggctgtgaggacaaggactcg
acggaacaagatggaaggaaagggccagagcaggaagtgacagatgctgagtctgcacct
gagaaagcgtctgagggtgaagacggcatagacgacaaaaccagtgaggacaggagcaga
gccgagtccccgcccacaaagacagagcccccagaacaaccctccgctcatcccgccctc
aaagcggactccaaagaaacggtgaaatcctcagagaaaagagactccgcctctccgcca
gacaaaaacgaagataaggaaaacaagccagatgagacgaagagcgacgatccactggaa
agtcgcttaaacggagacaaagacgctctggaggagatggaggagagccgaaaggaggac
aagaacgggttcaaggccaagttcatgttcaacatcgctgatggaggcttcacagagctg
cacaccctctggcaaacggaggagagagcagccatgtcttctctgaagatgcacgacatc
tggcaccgtcgccatgactactggctactggctggcatcgtgacacatggctacgctcgc
tggcaggatatccagaacgaccctcgctacgccatcctcaacgagcccttcaagtccgag
atgcacaaaggaaactacctggagatgaagaacaagttcctggctcgccgctttaagttg
ttggagcaggctctggtgatcgaggagcagttaaggagggcagcttatctgaacatgacc
caggaccccagccacccggccatggccctcaacacccgcttcacagaggtggagtgtttg
gctgagtcccaccagcacctgtccaaggagtcgctggccgggaacaagcccgccaacgcc
gtgcttcacaaagtgctgaaccagttggaggagctgctgagtgacatgaaagcagacgtg
acccgactgcccaacatgctgtccaggatcccgccggtatcggcccgcctgcagatgtcc
gagaggagcatcctgagccggctcaccagccggggcggcgagccccccccacagactttt
ggccagggcggcttcgcctgctcacagatgtacggcgggggttttgctgcaggattcaga
ggacctggcggacagcccatggttaactacagtcagatgcccttaggaccttacgtcagc
gtgtcttcaaatggaaccgcattacccacaagccatctggacaagaaatcgctcgagtcc
ctgagagacgtggggactcctgacctgaaatcgggcaaacctactgatgtcatctgcatc
gaggactag
DBGET
integrated database retrieval system
