Oryzias melastigma (Indian medaka): 112145960
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Entry
112145960 CDS
T07439
Symbol
shank1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
oml
Oryzias melastigma (Indian medaka)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
SAM_1
Ank_5
Ank_3
SH3_2
SAM_2
PDZ_6
PDZ
SH3_9
FERM_f0
SH3_1
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
112145960
NCBI-ProteinID:
XP_036069019
LinkDB
All DBs
Position
LG8:complement(3152523..3227176)
Genome browser
AA seq
2475 aa
AA seq
DB search
MTRFRSRTGRVLGVSQESSGCKLQPRLSGNDGAASNAAPPDAVMPFSPLSSDEEHQRMLG
NSRLLYPGAEDEEEEEEEEEEEMDEDERDEEGEEDENGELEGEEEDEEEEVRRGGPSRMG
RGQSHRQSGKMAGRPAAERRSGNPGHTANPYSSNPGPPHQQAANQTQQQRRLKERGANST
PSEDAHIAMMVFRIGIPDIKQTKCLRFNPDATVWKAKQQVLCSLTESLRDVLNYGLFQPA
TDGHDAKFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKASLKKF
MDYIQTSAVDKMAKFLDKGLDPNYQDADTGETPLTLAVQCEPGGGEAIRVLVDGGAHIDF
RAKDGLTPLHKAVRGHHHTALLVLLSLGASPDYKDRRGLTPLYHTVLTGGDTSCCETMLY
HRAKLGIRDENGWDETHQACQNGNSQHLEHLLFYGADSSSQNASGNTALHICALYNKESC
ARILLYRGASKDTKNNSGQTPFQVAVMSGHFELGEIIKNHRDTDVVPFVESPKYAPQRRD
SSRTLAVPHPHPFLRANSDSSMNLPDWMAVPNAPTSNIVSVQGFKHTGALRSSSSPRGAR
TRSPSRGRIGDKEDRSRQSRRQGPSSTSTTAQATDPRRRLYSAVPGRVFVATRAHSAQGE
REISFNKGDRVKVLSVGEGGYWEGTVRGRTGWFPSDCVEEVMLRQDNRSESRGERAKRLF
RHYTVGSYDSFDAPSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQ
YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNSLMVKVVMVTRNP
DMEEGSRKKIPQQSKRLNTPAIALRSKSMTSELEEMVERAATPWKKKSEFESSQAAEKKR
TVYQMALNKLDEILAAAQQTISNNEAPGTRGQGPKRDRGRSFYGNEVYGDQSGMGLMSSG
LGLGYDRGQYTSGHAPPHGMLRQKSIGVPEEEKQFLHPPAVKFARSLSVPGPDDIPPPPT
TAPPEPPFSSAPPLGWRAKSSQQPSVSVSQSTSTSAHYQPYSQAQSVHFTHGGRERAGGA
SAGAVDHTTSYAHAAAVHTAQSRTASRKVAYTGEPVGAGTGVKAAGLRRGYSTAVPPSSI
ATVMPQQQQTTQSQAQRADRSAAAAGGPKGGARRGKGPLVKQSKVEDLRAGQGTLGNKDS
VEKSSIPIPTIIVKAPSTSSSGRSSQGSSVEADVPTSGEANETKTSSTPAPQPPAPPSIP
APPPPSLPSIRAQENLDFTSQFGAAIVGAARRDRERFHEARRKSASLFMSAEEDVSLDGI
GGIARTQVSQQPLNTQADSSSTRLRPSKSIDEGMFSADTFIHHTRSMPPAFGLPEYSTPA
LDYQPKSVPADLYTAAGRQPTLPANTTFIHPLTGKALDPSSPLGLALAARERALRDDTTL
RRGPEHHFVRQMSSVVFPSSSVTSQAASSTSQSSSSYLVTSSSLAATTPTVGRPPSPRIL
RGVGSSWGEEGGGGGGEREREGGSREGLRVRFSEDKTVHTHHYQSQPYQPSYKERERDRS
RERDKDREGYLRRAEQTAANAAAADSAAHQVSQSQQPRRPTFLRMESQADAYRLSLTPPS
PPATSTQQPGSNAGGSGTGLMVLPPPAPSIDADDEFVYVDPLPPPLEFANSFDRGISGYS
QHRMLSNNMASRQQQAPPPPPPPPPPPPPPPPPPPPQKDHFVSGFPAHTPLPSPQAGDST
ASSLTSYDSEVANLTQSAPSPSQTSPNPPPPSSPSTLQPTMRPPPHPAVSPPPPPGSYHR
PFSMSHHLYNSTPATGRSSPTPPSHTIAPPPAYRGPPAHPTAATSVPHRGTASHATTASC
AATTTAAATTTSTSIHLYQERTQMTHTASSTAAAAGSRRAGEQQRSYPTTKKGESQETVV
DSGIEELDSRSSSDHHLDSILGLSGAGVRGERLDRGERLGVGGRLGGGGAGETERGGGDF
LESYMSYLDGQTFEMQNATAAASTYPKTSRFREGGRAGELQRQTSTAPPSFHSHRQRTDQ
EEDELEEGVADDEGGQDAYNIRDMQNLGRPTSPYFDRPRTPDMKPLWGDGQMSGDGSGQA
GSLLEGKKIYPPVSSMKPSIINELSSKLQQRSKDSWSSQRPLSRHRRRNRFSEDSASALS
PPSARSQSPSPISLSQPSLSPSPTPASHYPNWGRAPSPQPPAASQPPRSHSPLSPTSYSP
YPTSPKHRPVYRTKALEFQFIPSRESRKAESHMLQRRRAPSPLISPSERPKVAPPRPSSL
PLLPTSPLYSAIYDLRGSITPPSPANPLGDPYFSPSPPLFAPSGAPPPPNSTLVVSRSLS
PTHFLSGTSSPPLHPIPPPTCLSYPHLPPPSPTKPFASKPLPYWTKYDVADWLGYLNLGE
HRERFLDNEIDGTHLPSLTKEDYLDLGVTRVGHRMNIERALRSVIDRLSSSPFPISVLSP
RDGQTERRMEDGSRS
NT seq
7428 nt
NT seq
+upstream
nt +downstream
nt
atgacccggttcaggagcagaacagggagggttctgggtgtcagtcaggagtccagcggg
tgcaaattacagccgcgtctctctggaaatgatggcgctgcctccaacgccgcgccccct
gatgccgtgatgccattcagccccctgtcaagtgacgaggagcaccaaaggatgctgggg
aacagcagacttctttatcccggggcagaagacgaggaagaggaggaggaggaagaggag
gaggaaatggacgaggacgagcgcgacgaggaaggagaggaggatgagaacggtgagctg
gagggggaggaggaggacgaggaggaggaggtgaggcggggaggcccgtctcggatgggc
cggggtcaaagccacaggcagtctgggaaaatggccggacggcccgcggcggagcgacgc
tcgggcaatcctggacacaccgcaaacccgtactcatccaaccccggacccccccaccaa
caagcagccaatcagacgcagcagcagaggaggctgaaggagcgcggcgccaactcaacg
ccatctgaagatgcccacatcgccatgatggtgttccgcatcggcatcccagacataaag
caaacgaaatgtttgcgcttcaacccggacgccacggtgtggaaggccaagcagcaggtg
ctctgctccctgaccgaatccctgcgggacgtcctgaactacggcctgttccagcccgcc
acggacggccacgatgccaagttcctggaggaggagaggctgctccgagagtacccacaa
tcctttgagaagggggttccatatctggagttccgctataaaaccagggtctacaaacaa
accaatctggatgagaagcagctggccaagctgcacacgaaggccagtctgaagaaattc
atggactacatccaaaccagcgccgtagacaagatggccaagtttctggacaagggtctg
gatcccaactaccaggatgctgacaccggcgagacccccctgaccctggcggtgcagtgc
gagccgggtggcggcgaggccatccgggtgctggtggatggaggggctcacatcgacttc
cgtgccaaagatggactcacgccgctccacaaagctgttcgaggccaccaccacacagcc
ctgctggtgctgctctctctgggtgcatctccagactacaaggaccggcgggggctgacg
ccgctttaccacactgtgctgacgggaggcgacacctcctgctgtgaaaccatgctgtac
cacagagccaagctgggcatcagggacgagaacggctgggacgagacgcatcaggcctgt
caaaacggaaactcgcagcatctggagcacctcctcttctacggggcggactcctcctcc
cagaatgcctctggaaacactgccttgcacatctgtgctttatacaacaaggaaagctgt
gcacgaatcctgctgtaccgcggagccagtaaggacacaaaaaacaacagcgggcagacg
cccttccaggttgctgtcatgtctggtcattttgaactcggtgaaattattaaaaaccac
cgagatacggatgtggttcccttcgtggagtctcccaagtacgccccccagaggcgggac
agttcccgcaccctggcagtgccccaccctcacccgttcctccgggcgaacagcgacagc
agcatgaaccttcccgactggatggcggtgcccaacgcccccacctccaacatcgtgtct
gtgcagggcttcaagcacaccggagctctgaggagctccagcagtccccggggagccagg
acgcgctcgccatcgcgagggaggatcggggacaaggaggaccggagccggcagagccgg
aggcaggggccttcctccaccagcaccacagcacaagctacagacccgcgccgacgcctc
tacagcgccgtcccaggacgggtcttcgtggccactcgagcgcactccgcacagggagag
cgagaaatcagcttcaataagggagacagggtcaaagtgctgagcgttggcgaaggcggg
tactgggagggcacggtgagaggccgcacaggatggttcccctccgactgcgtggaggaa
gtgatgctgcgacaagacaaccgatcagagagtcgaggggagcgagctaaaaggctgttc
agacattacactgtgggctcctacgacagcttcgacgctcccagtgactacataatcaag
gagaagaccgtgctcctccagaagaaagacagcgaggggtttggctttgtgctaagaggg
gctaaagctcagactccgatcgaagagttcacacccactccggccttcccagctctgcag
tatttggagtcggtggacgaaggaggagtggcctggagagccggcctcaggatgggggat
tttctcatagaggtgaacggtcagaacgtggtgaaggtcggtcatcggcaggtcgtcaac
atgatccgacagggcggcaacagcctcatggtgaaggttgtcatggtaacgcgcaaccca
gacatggaggagggttccaggaagaaaatcccacagcagagtaagaggctgaacacgccg
gccatcgccctgcggtccaaatcaatgacttcagagctggaggaaatggtggagagagct
gctaccccatggaaaaaaaaatcagaattcgaatcctcacaagctgcagagaagaagagg
acagtctatcagatggctctgaataaactcgatgaaattcttgcagcagctcaacagaca
atcagcaacaatgaggcgccggggacacggggacaggggccaaagagagacagggggagg
agtttctatggcaatgaggtttacggagatcagtccgggatggggctgatgtcgtcaggg
ttgggcctcggttacgaccgtggacaatacacctcaggtcatgcgcccccgcacggtatg
ctgcggcagaaatccatcggtgtgcctgaggaggaaaagcagttcctgcatcctccagcg
gtgaagtttgccagaagtctatcggtgcccggccctgacgacattcctcctcctccgacc
acagctccaccggagcctccattctcctccgctcctccacttggttggagagccaagtca
tctcagcagccctctgtctccgtgtcccaatctacgtccacctctgcacactaccagccc
tactcccaggcccagtccgtgcacttcacccatggtggcagggagagggcgggtggtgcc
agtgctggagcagtggaccacaccacatcttatgcacacgctgcagctgtccacacagct
caaagcaggactgcttcgcgaaaggttgcctacactggggaacctgttggggctgggacg
ggggttaaggcagcaggtctccgaagaggctacagcacagccgtccctccatccagcatc
gcaacagtgatgccccagcaacaacagactacccagagccaagcccagcgtgcagaccgc
agcgcagctgcagctgggggtcctaaaggaggggccaggagagggaaaggccctctagtg
aagcagtccaaagtggaggacctgcgtgccggccagggaactctggggaacaaagactct
gtggagaaaagctccatccctatacccaccatcatcgtcaaggccccttcaaccagcagc
agtgggcgtagcagccaaggcagcagtgtggaggctgacgttcctacatcaggggaggca
aatgagacaaaaacatcctctactcccgctccacagcctcctgcgccaccatccattcca
gcaccgccacctccctctttgccttcaattcgggcccaggaaaacttggacttcaccagc
cagtttggggctgccattgttggtgcagctcgcagagaccgggagcggtttcacgaagca
cggcgaaagagcgcctccttgttcatgtcggccgaggaggacgtgagtcttgatggaata
ggcgggatagcacggactcaggtgtcccagcagccgctcaacacacaggctgacagttca
tcgacccgactacggccctcaaaatccattgatgaaggcatgttctctgcagacaccttc
atccatcacacccggagtatgcccccagcttttggcctgcctgaatactccacgcctgcc
ctggactatcagcccaaatctgtgcctgctgatttgtacacggcagcaggcagacagccc
acactccccgcaaacaccaccttcatccaccctctaacggggaaagctcttgacccctca
tcaccattagggcttgccctagccgctagagaacgcgccctgagggacgacaccacgctc
agaagaggaccggagcatcacttcgtccgccagatgtcgagcgtagtcttcccttcgtcc
tctgtcacctctcaggcagcgtcatccacatcgcagtcctccagctcgtacctggtcacc
tcttcctccctggcggccactacccccacagttggtcgcccgccgtctcccagaatcctc
agaggagttgggagttcatggggcgaggaaggtggtggtggtggaggagagagggagcgg
gaaggagggagtcgggaagggctcagggttcgcttttcggaggacaaaacggtccacacg
caccactatcagtctcagccatatcagccttcatacaaggagcgggagcgcgaccggtcg
agggagagggacaaagacagggaggggtacttgaggagggcagagcagactgctgctaat
gcggcggcagctgatagtgccgcccatcaggtgtcccagtctcaacagcctcggaggccc
acttttctcaggatggaaagtcaagcggatgcttatcggctgtccctcacacctccttcc
cctccagcaaccagcacccagcaaccggggagcaatgcaggaggcagcgggacgggcctg
atggttcttcctcctcctgctccttcaattgatgccgacgatgagtttgtctacgtagac
cccctcccaccgccgttagagttcgccaacagctttgataggggaatttccgggtactcg
caacacaggatgctttccaacaatatggcttctcgccaacaacaagccccgcctccccca
cctcctcccccgcctccacccccacccccaccacctcctcccccaccccaaaaagaccat
tttgttagtggctttcctgcccacacacccctgccctccccacaggcgggcgactccacc
gcctccagcctcacgtcctacgacagcgaggtggcaaacttgactcagtctgccccatcc
ccctcccagacgtcgcccaatcctccaccgccctcctcgccatcaactctgcaaccaacc
atgaggcccccaccacacccggctgtctctccaccgcctccccccggatcgtaccatcgc
cccttctccatgtcgcaccatctttacaacagcacccccgctactggacggtcttcaccc
acacctccgtcgcacacaatcgccccacccccagcataccgtggtccccctgctcaccct
acagccgccacctccgtcccgcacaggggcaccgcctcccatgcaacgaccgctagctgt
gctgctacaaccactgctgctgccaccacaacaagcacctccatccatctctaccaggag
agaacacagatgacgcacacggcctcgtccaccgccgccgccgcaggcagtcgtagggca
ggggagcaacagcgctcttaccccaccaccaaaaaaggagagtcccaggagacggtggtg
gactctgggatcgaggaactggacagtcggagcagcagcgaccaccacctggacagcatc
ctggggctgagcggtgctggcgttcgtggggagaggctggaccgaggtgagaggttagga
gtgggaggacgactgggaggaggcggggcaggagagaccgaaagaggagggggagatttt
cttgagtcttacatgagctacttggacgggcaaactttcgagatgcagaatgcaacagcc
gcagcctccacctacccgaaaacgagcaggttcagggaaggaggccgtgccggcgagctg
cagagacagaccagcaccgctccgccatccttccactcccacaggcagaggacggaccag
gaggaggacgagctggaggagggagtggcagacgacgaaggcggccaggacgcgtataat
atcagggacatgcaaaatttgggacgtcctacttcgccgtatttcgatcggccgcgcacg
ccggacatgaagcctctctggggggacgggcagatgagtggagatggaagcggccaggcg
ggatcgcttttggaagggaagaagatttacccccctgtttccagtatgaagcccagcatc
attaatgagctgagcagcaaactgcagcaaagaagcaaagacagctggagcagccagaga
ccgctgagcagacacagacgcagaaacaggttttcagaagactcggcttcagctctgagc
cccccctcggctcgatctcagtcaccgtctcccatctcattatcgcagccgtcgttatct
ccatctcccaccccggcttcccattaccccaactgggggcgagcgccatcccctcagccc
cccgccgcctctcagccgccacgttcccattccccgctgtcccccacatcctattccccg
taccccacctcccccaagcacagacctgtctaccggaccaaagctctagaatttcagttc
atccccagtcgagagtctcgaaaagcagaatcccacatgctccagcgcaggagagccccc
agcccgctcatttccccgtccgagaggcccaaggtggccccgccgcgcccgtcctccctc
cctctgctccctacctcacctctgtatagtgccatctacgacctccgcggttccatcacc
ccgccatcgcctgcaaaccccctcggagatccctacttctccccttccccccccctgttt
gccccatctggggcgccgcctcctccaaactccaccctggttgtgtctcgatcgctttct
ccaactcactttctgtccgggacatcgtctccgcccctacaccctatccctccgcccacc
tgtctgagttacccccatttaccgcccccgtcccccaccaagccctttgcctccaagccc
ctcccctactggaccaagtacgacgtcgccgactggctgggatacctgaacctgggagaa
cacagagagcgtttccttgacaacgagatcgacggcacccacctgccctccttgaccaag
gaagactacctggatctgggggttacgagagtcgggcaccgcatgaacatagaacgagct
ctgaggagcgtgatagacagactgtccagcagccctttccccatctccgtcctgtcacct
cgggacggacagacggagaggaggatggaggacgggagtcggagctga
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integrated database retrieval system
