Oryzias melastigma (Indian medaka): 112145981
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Entry
112145981 CDS
T07439
Symbol
cacna1ha
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H isoform X1
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04010
MAPK signaling pathway
oml04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112145981 (cacna1ha)
04020 Calcium signaling pathway
112145981 (cacna1ha)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oml04040
]
112145981 (cacna1ha)
Ion channels [BR:
oml04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
112145981 (cacna1ha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
UPF0542
FAM176
Motif
Other DBs
NCBI-GeneID:
112145981
NCBI-ProteinID:
XP_024127281
Ensembl:
ENSOMEG00000020008
LinkDB
All DBs
Position
LG8:16026212..16145734
Genome browser
AA seq
2433 aa
AA seq
DB search
MTDGEGRVRFQYSDCPEQEEVRRNAPKADRSTSPGHEVDPGGGRDEEMEKGEGDKTKKRE
SRGPGEDDWSREVQDNEVRESELDVDEEPDPANVRINLSSISCEEEQPFPALAPKAFFCL
KQTTRPRYWCIRIVCNPWFEYISMMVILLNCVTLGMFQPCEDVDCLSERCKVLQVLDDCI
FAFFAVEMVIKMLAFGIFGSKCYLADRWNQLDFVIVMAGMLEYSLDGQNASLSAIRTVRV
LRPLRAINRVPSMRILVTLLLDTLPMLGNVLFLCFFVFFIFGIVGVQLWAGLLRNRCFLE
EKAKALYNLSLKPYYMGEEGEDSPFICSMPRENGMLHCKDVPPSTEDEVECSLPAPLQSS
LLIGSFDSVGGASVNGCVNWNQYYNNCSAGDLNPHKGAVNFDNIGYASIAIFQVITLEGW
VDIMYFVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRENALMREQRARY
MSSDSTFSSYTEPGSCYEEILRYISHLYRKLRRRLQRIYYRWHSKRRKKLNPNGSGDGSS
SSGNGHGQGSKRVSSGPGAAFWLRPIHNLMQQHRQEHCHLSNGGQHNVPTVEHTDGEGGV
RGVDELEMKSLPVRIGCTNENSADSPAGMTRGTGPLLGHLNGGMNYPTILPSFVCSCSSE
TAQTYSNQCRPTPEQHLANRTLSQHNDVLNRLHQLLGQRNRHSLLQMATVLPSSQLIELL
QCPLCVQSLKTLEQELRDLEKGNGEPDRLLDFRHLRKELECDKRRVRDRFRQPKLVFSRA
ARAWTNFRETLRTIVESKYFNQAIMTAILVNTFSMGIEYHEQPEYLTQVLEITNFVFTSI
FVLEMGFMLLAFGLWGYIKNPYNIFDSVVVIISVWEISAQADGGLSVLRTFRLLRVLKLV
RFMPALRRQLVVLMKTMDNVATFCMLLMLFIFTFSILGMHLFGCKFGLRLENGDTIPDRK
NFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSPWAALYFVALMTFGNYVLFNLLVAILV
EGFQAEGDANRSESDDEKKSDNSDEDEKLEQFTDIELEMTANGHIDPRGTAAPPIIMHTA
ATPMPTPTSSLGPESILGEELFYREGIPREVEVGQGFSNAGIGQMDSRTGSSTSIDPSAF
DQHSLSFSSPGRRSPLPPRGSSSTWGSRRSSWNSLGRAPSLKRRDTSGERESLLSEEGAE
EEDGHDNLGRAGPNRRPKSLEQLQASTLCPSMIGEHSDCNGMTLTCSPDENADAKDDVSL
EDDFDEDSPFSHWLLRKIQNLKPRWCREHEDCSLYLFAPESRFRSCCQRVISHKLFDHVV
LFFIFLNCITIAMERPDIKPHSLERLFLSASNYIFTVIFLIEMAIKVVALGFCFGKQCYL
QCSWNILDGLLVFVSLVDVLVSIAYAGENKILGVLRVLRLLRTLRPLRVISRAPGLKLVV
ETLITSLRPIGNIVLICCTFFIVFGILGVQLFKGKFYICEGFDTRNVTNKSDCLQANYRW
TNRKYNFDNLFKALMSLFVLSCKDGWVNIMYDGLDAVGVDQQPVRNHNPWMLIYFISFLL
IVSFFVLNMFVGVVVENFHKCRQDQEEEEARLREDKRQKMIDKKRRSKENRGAEAMQRPY
YADYSPVRLYIHRLCTNHYLDLFITLIVGINVLTMSVEHYNQQQYLKEALKNCNYVFTFI
FVVEALLKLVAFGIHRFFKDKWNQLDVTIVALSILGIVLEELNMKGALPMNPTILRIMRV
LRIARVLKLLKMAKGMRALLDTVMQALPQVGNLGLLFMLLFFIYAALGVELFGKLKCTDS
NPCEGLSRHATFENFGMAFLTLFRVSTGDNWSGIMKDTLRDCQPDDRNCFAYLAWVSPFY
FVTFVLIAQFVLVNVVVAVLMKHLEESNKEAKEDAEMDAEIALEMEREKDAHQSPGSSES
SMDDKDQCVGENLLSAETMSVLRMHSLPDDSYMFRPVRPASAPCPLEEVEAVPQHSMTVA
SVNSQPLKSRSLLQVPDVSSVHPQSPPTFILPRIAPPTTSPSPRTLHRQVAVKLDSVESQ
SSEQQEKPNSALPVPHHSSSPSPLPSLLSAPFPLPPPRSSPSLLLPPPPSPRLPSRSASL
RSRPRPPSAVSLFDPADEEVYHITSSARQRRRNEEDGGQEGKRKAGRSHSLSPYTLPGFV
CADSSSPPPPPPLPPSSSRSALSLLGAGLKDIRKGFSVDNQGFLEKPSSTSGGYADDQRR
HSIEVCLPQAVITGDPAHFALEKAAFPMRVQSERRGCIHRKKKMSPPCISIHPPSERDPA
QTSSPPKLADCSMLLRRRTPSSDSNAQDAEAHRQMPVPLTPTPAPPPSPSRPQTHTPLPT
PTPPHIPISPNIFIQPHAPLLPFPPAQPRSPAARQSPRVGDYPPVPHFTFDPLQSRLMDG
LSASMDADACSAPFDGRMASSAGFNANNQRTAP
NT seq
7302 nt
NT seq
+upstream
nt +downstream
nt
atgactgatggcgaggggagagtgcgctttcagtactcggactgcccggagcaggaggag
gtgaggcgcaacgcaccgaaggctgacaggagcaccagcccaggtcatgaggttgacccc
ggaggaggtcgagatgaggagatggagaagggagagggggataagaccaaaaagcgggaa
agccgtggtccgggggaggacgactggagccgggaggttcaggacaacgaggtgcgagaa
tcggagctcgacgtggacgaggaacccgatcccgccaatgttcgaatcaacttatcaagc
atctcgtgtgaggaggagcagccgtttccagctctggctccaaaggcctttttctgtcta
aagcaaactacaaggcctcgctattggtgtattcggatcgtctgcaacccgtggttcgag
tacatatccatgatggtgatcctgcttaactgtgtgactctggggatgtttcaaccctgc
gaggacgttgactgcctgtcggagaggtgcaaagtgctgcaggtgttggacgactgcatc
tttgctttctttgcggtggaaatggtaatcaagatgttggcctttgggatttttggctcc
aaatgttacctggcggacaggtggaaccagctggactttgtgatcgtaatggcagggatg
ttggaatattctctggacggccaaaatgcgagcctgtcagccatccgtacagtccgcgtg
ctcaggccactgcgggccatcaacagagttccaagcatgaggatcttggtgacactgctc
ttggacactttgcccatgctgggaaatgttctttttctctgcttctttgtatttttcatc
tttggcatcgtgggagtccagctgtgggcggggcttctacgcaaccgctgctttctggaa
gaaaaagcaaaagcattgtacaacctgtccttgaaaccttactacatgggagaggagggc
gaggacagcccgtttatctgttcaatgccgcgcgaaaacgggatgctgcattgcaaagac
gtgccgccctccaccgaggacgaagtggagtgctcactgcctgctcccctgcaaagctct
ctgctgattggctcctttgattctgtgggcggggctagtgttaacggatgcgtgaactgg
aaccagtactacaacaattgcagcgctggagatttaaatccacacaagggggcagttaac
tttgacaacataggctatgcttccatagctatcttccaggtcatcacacttgaaggctgg
gtggacattatgtactttgtcatggatgctcactctttctacaattttatatattttata
ctactcattattgtgggatctttctttatgatcaacttgtgcctcgtggtcatcgccacc
cagttctctgaaacaaaacagagggagaacgccctaatgagggagcagcgtgctcgctac
atgtccagtgactccacattttccagctacactgaaccgggctcgtgctatgaagaaata
ctacgttacattagtcacctttatcgtaagctacgccgcaggctgcaaaggatatactat
cggtggcacagtaagcggcgtaaaaaactgaaccctaatggaagtggagacggcagcagc
agcagtgggaacggacacggtcaaggttccaagagggtttcctctggcccaggagccgct
ttctggctgaggccgatccacaacctcatgcagcaacaccggcaggagcactgccacctc
agcaatggcggccagcacaacgtgccgaccgttgagcatacggacggagagggaggcgtc
cgaggcgtggatgagttggagatgaagtcgcttcctgttcggataggatgtacaaatgaa
aatagcgccgatagcccggctggaatgacccggggcacggggccgctgctcggacatctc
aacgggggcatgaactatccaaccatactaccgtcttttgtgtgcagctgcagcagcgag
acagcacagacctactcaaaccagtgtagacccactccagagcagcatttagctaaccgc
acgctgtctcaacacaatgacgtgctaaaccggctccaccagctcctgggacaacgcaat
cgccacagtctgctacagatggccaccgtgttgcccagctctcagctgatcgagttgctc
cagtgccctctgtgtgtccaaagccttaaaaccttggaacaggaactacgggacctggag
aaaggcaacggggagccagaccgcctgcttgattttcgccatcttagaaaggagctggaa
tgcgataaacgaagagtcagagatcggtttcggcagcccaagcttgtgttcagtagagcg
gctcgcgcctggacaaatttccgggaaaccctgaggacaattgtggaaagtaaatacttc
aaccaagccatcatgacggccatcctggtcaacactttcagcatgggcatagaataccac
gaacagcctgagtacctgactcaagtattggagatcaccaatttcgtcttcaccagcatc
tttgtcttggagatgggcttcatgctgctggcgtttggcctttggggatatatcaaaaac
ccgtacaatatttttgacagcgttgtggttataatcagcgtctgggagatatctgcccaa
gcggacggggggctgtcggtcttgcgaacctttcggctgttgcgtgtcctgaagctggtt
cgcttcatgcccgccctgaggcgccagctggtggtgctgatgaagaccatggacaatgtg
gccaccttctgcatgctgctgatgctcttcatcttcactttcagcatactgggaatgcat
ctgtttggttgtaagttcggccttcgtttggaaaatggagacaccatccctgaccgcaaa
aacttcgactctcttctctgggccatcgtcaccgttttccagattctgacccaggaggac
tggaatgtggtgttgtataacggcatggcctccacctctccatgggcggctctctacttc
gtggctctcatgacgtttggaaactacgttctgttcaatttattagtggccattttggtt
gaaggcttccaggctgagggcgacgccaatcgctcagaatcagatgatgaaaagaagtct
gacaactcagatgaagatgagaagttggaacagttcactgacatcgagcttgagatgacg
gccaacggtcacattgaccctcgtggaactgcagctccacccatcattatgcacacggca
gctacgcccatgcccactcccacaagctctctgggaccggagtctattctaggagaggag
ctcttctacagagaggggatacctagggaggtggaggtcgggcagggtttttcgaacgct
ggaatcggtcaaatggattctcggactggaagctcaacatccatagatccttccgctttc
gatcagcactccctgagcttctcaagtcccggccggcgctcgcctcttccaccccgtggc
tctagcagcacatggggaagccggcgctccagctggaacagcttgggaagagcccccagc
ctcaaaaggcgagacaccagcggcgagagagagagcctactgtcggaggagggcgcggag
gaggaagacggccacgacaacctggggagggctggcccaaaccgcaggccgaagtctctg
gagcagctgcaggcgtcgacgctttgtccttccatgatcggggaacacagtgactgcaat
gggatgacgctgacatgcagcccggatgagaacgctgacgccaaagatgacgtgtctcta
gaggacgactttgacgaagatagtcccttcagtcactggctgctgaggaagatccagaac
ttgaagcctcgctggtgcagagaacacgaagactgctcgctctacctgtttgctcccgag
agccggtttcgttcatgttgccaaagagtgatttctcacaaactgttcgaccacgtggtt
ctgtttttcattttcctcaattgcatcaccatcgccatggagaggcccgacataaagcct
cacagcctggagcgtctgtttctgagcgcatccaactatattttcaccgtgatcttcctc
atagagatggccataaaggtcgtagcgctcggtttttgctttgggaagcagtgctacctg
cagtgctcctggaacatcctggatgggttgctggtgttcgtgtctctggtggacgttctg
gtctccatcgcttacgccggtgaaaacaagatcctgggagttctccgagtccttcgtctt
ctacgcacgctccgccctctgagggtgatcagtcgagctccaggattaaagctggttgtt
gagacactcatcacttcactaagacccatcgggaatattgtcttgatctgctgcaccttc
ttcattgtctttggcatcttgggggttcagttgtttaaaggaaagttctacatctgtgaa
gggttcgacaccagaaatgtcaccaataagtccgactgtctgcaggccaactatcgctgg
acaaaccgaaagtacaactttgataatctgtttaaggccctaatgtctttatttgtgctg
tcgtgtaaagacggctgggtaaacatcatgtatgatggactggatgcagtaggtgtggat
cagcagcctgtgaggaaccacaacccctggatgctaatctacttcatctccttcctgctc
atcgtcagcttcttcgtcctcaacatgttcgtgggtgtggtggtggagaactttcacaag
tgccggcaggaccaggaggaggaggaggcccgcctgcgggaggacaagaggcagaaaatg
atagataaaaagcgcaggagtaaggagaatagaggggctgaggccatgcagaggccgtac
tatgcagactactctcctgtgcgcctgtacatacacaggctgtgcaccaaccactaccta
gacctcttcatcaccttgatcgttggcatcaatgtcctaacaatgagtgttgagcactac
aatcagcaacagtatttgaaggaggccctgaagaactgcaactacgtgtttaccttcatc
tttgtcgttgaggccctgcttaagcttgtggcgtttgggatccatcgcttctttaaagac
aagtggaatcagctggatgtaacaatagtggcactgtccatcctgggcatcgtcctggag
gagctaaacatgaagggggcgctgcccatgaatcccaccatcctcagaattatgagagtc
ctcagaatagcacgagtgttgaagcttctaaagatggcaaaaggaatgagagctctgctt
gatacggtgatgcaggcgttgcctcaggtgggaaatcttggcctcctcttcatgctgctc
ttcttcatctatgctgctctgggagtggagctctttggcaaactgaagtgcacagacagc
aacccctgtgaaggtctgagtcgtcacgcaacctttgagaattttgggatggccttcctc
acgctcttccgagtgtccaccggggacaactggagcgggattatgaaagatacattaaga
gattgtcaaccagacgaccgcaactgtttcgcctacctggcctgggtctctcccttttat
ttcgtcaccttcgtgctcatcgctcagtttgttctggtgaatgtggtggtggctgtttta
atgaagcatctggaggagagtaataaggaggcgaaagaagatgcagagatggatgcggaa
attgcgctggaaatggagagggagaaggatgcccatcagagtcctggttccagcgagtcc
tcaatggacgataaagaccagtgcgtaggtgagaatctgttgagcgccgaaaccatgtcg
gtgctcaggatgcactcgctaccggatgacagctacatgttccgacctgtgaggcccgcc
agcgccccctgccctttggaggaagtcgaggccgttcctcagcattcaatgactgtagca
tcagtcaactctcagcccttaaagagccgctctctgctgcaagttccagatgtttcttct
gtccaccctcagtcaccgcccactttcattctgccccgcattgccccgcccacaaccagc
ccctcaccacggactctgcacagacaggtggcggttaagttggattctgttgagtctcag
agttcggagcagcaggagaagccaaactccgccctccccgttccacaccactcctcttct
ccatcgcccctcccttctctactctccgccccctttcctctacctcctccaaggtcttcc
ccgtcgctcctcctccctccgcccccatccccgcgcctgccctcccgctcggcgagcctc
cgtagtcgaccccggccgccgtccgccgtctccctctttgaccccgccgacgaggaggtc
taccacatcaccagctccgcccgccagcgccgccgaaacgaggaggacggcgggcaggag
gggaaaagaaaggcggggcgtagccactccctctccccttacaccctgccgggtttcgtt
tgcgccgactcctcatctccgcctccgccgcctcctctgccgccgtcctcgtcgaggagc
gccctcagtctgctgggcgccgggctgaaggacatccggaaaggcttcagcgtcgacaac
cagggcttcctggagaagccttcgtccacatctggaggttatgccgatgaccagcgccgc
cactccatcgaggtctgcctcccacaggcggtcataacgggagaccccgcccacttcgcg
ctggagaaggccgccttccctatgagggtgcagtccgaacggagagggtgcatccaccgg
aagaaaaagatgagccccccctgcatatccatccaccccccctcagagagggaccccgcc
cagacgtcctcccccccaaaactggcggactgcagcatgctgctccgccgccggacgcca
tccagcgactccaacgcgcaggacgccgaagcacacaggcagatgccagtcccgctgacg
cccacccccgccccgccaccgtccccatcccgcccgcagacccacacccccctgccgacg
cccacgccgccacacatccccatcagccccaacatcttcatccaaccccacgcacctctc
ctgcctttccctccggcgcagcctcgctcccccgctgccagacagtctccccgtgtgggc
gattacccccccgtgccccacttcaccttcgacccgctgcagtccagactgatggacggc
ctgtcagctagcatggacgcagacgcctgctccgccccgttcgacggcaggatggcgagc
agcgcggggtttaacgctaataatcagaggactgcgccatga
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integrated database retrieval system
