Oryzias melastigma (Indian medaka): 112145982
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Entry
112145982 CDS
T07439
Symbol
shmt1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml00260
Glycine, serine and threonine metabolism
oml00630
Glyoxylate and dicarboxylate metabolism
oml00670
One carbon pool by folate
oml01100
Metabolic pathways
oml01200
Carbon metabolism
oml01230
Biosynthesis of amino acids
oml01240
Biosynthesis of cofactors
oml04981
Folate transport and metabolism
Module
oml_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
112145982 (shmt1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
112145982 (shmt1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
112145982 (shmt1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
112145982 (shmt1)
Enzymes [BR:
oml01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
112145982 (shmt1)
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Motif
Other DBs
NCBI-GeneID:
112145982
NCBI-ProteinID:
XP_024127283
Ensembl:
ENSOMEG00000005205
UniProt:
A0A3B3D3T0
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Position
LG8:complement(18328077..18331928)
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AA seq
482 aa
AA seq
DB search
MALTNGHSINKETWDSHNKMMLEPLSINDPEIFSIIKKEKKRQTYGLELIASENFASRAV
LEALGSCMNNKYSEGYPGQRYYGGTEHIDELERLCQKRALEAFSLDPEKWGVNVQPYSGS
PANFAVYTAVVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNQETGYI
DYDRLQENARLFHPKLIIAGTSCYSRNLDYARLKQIANENGAYLMGDMAHISGLVAAGVV
PSPFEHCDIVSTTTHKTLRGCRSGVIFYRKGVRSVDAKGKETLYNLESLINQAVFPGLQG
GPHNHAIAGVAVALKQAMTPEFKVYQQQVLANCKALSNALVGHGYKIVTGGSDNHLILLD
LRNKGTDGGRAEKVLEACAIACNKNTCPGDKSALRPSGLRFGSPALTSRGLVEEDFKKVA
LFIHKGVELTLEVQRSLDPKANLKEFVQALNQGEKFQERVAALRAEVEDFAGQFPMPGLP
EL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggctttgacgaatggccacagcatcaataaagaaacctgggactctcacaacaagatg
atgttggagcctctgtccatcaacgaccctgagattttttccatcataaagaaagaaaag
aagaggcagacgtacggtttggagctgatagcatctgagaattttgccagcagggctgtt
cttgaagctctgggatcttgcatgaacaacaagtactctgaaggttatcctggccaaagg
tattatggtggcacagagcacattgacgagctggagaggctgtgtcagaagagagcactg
gaggcctttagtctggacccggagaaatggggagtcaacgtgcagccatactctggttct
ccggccaactttgccgtgtacacggctgttgttgaacctcatggcaggatcatggggctg
gaccttcccgatggaggtcacctgacacacggcttcatgactgacaagaagaagatctct
gcaacatctatcttctttgagtccatgccatataaggtgaatcaagaaaccggctacatc
gactatgacaggcttcaagaaaacgcacgactctttcaccctaagctcatcattgcagga
accagctgctattcccggaacctcgactacgcccgcttgaagcagattgctaatgagaac
ggggcctacctgatgggagatatggctcacatcagcgggttggttgctgctggggttgtg
ccgtcacctttcgagcattgtgatatcgtttccacgacaacccataagacgctgcgcggc
tgccgctcaggagtcatcttctataggaaaggtgtgaggagtgttgatgctaaaggaaaa
gaaactctatacaacttggagtcgttgataaaccaggcggtgtttccggggctgcaggga
ggacctcacaaccacgctattgcaggcgttgctgtggctctaaaacaagccatgacgcca
gagttcaaggtctaccagcagcaggttcttgctaactgtaaggctctgtccaatgctctc
gtaggccacggctacaagattgttactggcggttctgacaaccacctgatactgctggac
ttgcgcaacaaagggactgatggagggcgagctgagaaggtgctggaggcctgtgccatt
gcctgcaataagaacacctgtccaggggacaagagcgctctgcgccccagtggactcagg
tttggctcgccagctctgacctccagaggcttagtggaagaagactttaagaaggtggct
ttgttcatccacaaaggtgtggagctgaccctggaggtgcagaggagcctggatcccaaa
gccaatctgaaggagtttgtccaggctctcaatcagggagagaagtttcaggagcgagta
gcggcgctgagagcagaggtggaggatttcgccgggcagttccccatgcccggcctgccc
gaactgtga
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