Oryzias melastigma (Indian medaka): 112145983
Help
Entry
112145983 CDS
T07439
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112145983 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112145983 (cpsf4)
03019 Messenger RNA biogenesis [BR:
oml03019
]
112145983 (cpsf4)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112145983 (cpsf4)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112145983 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCHC
zf-CCCH_4
zf-CCHC_3
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
112145983
NCBI-ProteinID:
XP_024127286
Ensembl:
ENSOMEG00000005176
UniProt:
A0A3B3BF55
LinkDB
All DBs
Position
LG8:complement(18322054..18327172)
Genome browser
AA seq
265 aa
AA seq
DB search
MQDLLANVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGSAVCEFFTRGACMKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLIGFCPEGKSCKFMHPRFELPMGTSEQPP
LPLQIQNQGKTAASSGRSCLSLIQLTNSSPGQRQQNNTNIISHQNNMNANRGPRPLDQVT
CYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacctactagcaaatgtggatcacatcaagttcgacctggagatcgccgtggag
cagcagctgggggcgcagccgctgccgtttcccggcatggacaagtccggctcagctgtg
tgcgagttcttcacgaggggagcgtgtatgaaaggtggaatgtgtccgttccgtcacatc
agcggggagaagacggtggtgtgtaagcactggctccgagggctctgcaagaagggagac
cagtgtgagtttctgcacgagtacgacatgaccaagatgcctgaatgctacttctactca
aagtttggtgagtgcagcaacaaggaatgtcccttcctgcacatcgatccagagtctaag
atcaaagactgtccctggtacgacagaggtttctgcaaacacggtcctgactgcagacac
agacacacgagaagagtgatctgtgtgaattatctgattggtttctgtccagaaggcaaa
tcctgtaaatttatgcacccgcgttttgagttgcctatgggaacgtccgaacagcctcct
ctaccactgcaaatccaaaaccagggaaagactgcagcttccagcggacgctcgtgtctt
tccctcatccagctgaccaactccagtccgggccagcggcagcagaacaacaccaacatc
atttctcatcaaaacaacatgaatgccaacagaggaccccgacctctcgaccaggtcacc
tgttacaagtgcggcgagaagggccactacgccaacaaatgcaccaaaggccaccttgcc
ttcctgagtggacagtaa
DBGET
integrated database retrieval system
