Oryzias melastigma (Indian medaka): 112145997
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Entry
112145997 CDS
T07439
Symbol
ubtf
Name
(RefSeq) nucleolar transcription factor 1 isoform X1
KO
K09273
upstream-binding transcription factor
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112145997 (ubtf)
03021 Transcription machinery [BR:
oml03021
]
112145997 (ubtf)
Transcription factors [BR:
oml03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
UBF
112145997 (ubtf)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
UBF
112145997 (ubtf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_5
HMG_box
HMG_box_2
HMG_WDHD1
Rv0078B
Motif
Other DBs
NCBI-GeneID:
112145997
NCBI-ProteinID:
XP_024127304
Ensembl:
ENSOMEG00000020580
LinkDB
All DBs
Position
LG8:4319579..4329914
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AA seq
744 aa
AA seq
DB search
MNGEMEATAQDQVWAQEDLLRLLEAMKVALPQKDLTKYKTSESHLDWQKVAFNSYTAEMC
RLKWLEVSKEIRKFRTLTELIVDAQDYIKNPYKGKKIKKHPDFPKKPLTPYFRFFMEKRA
KYAKLHPEMSNLDLTKILSKKYRELPDKKKKKYVEDFLRDKEAFVQSMMKFREEHPDLVE
TITKKGSNVPEKPKTPQQLWYNHEKKAFLKTRPDATTKDIKDSLGKQWTQLPDKKRLKWI
SKSLEQQKVYEETMRGYIQQHPELNMTQEDYVKSILTKAERHLKDKSDGRPDKPPPNGYS
MFCAELMSSMKDVPSTERMMMCSQRWKLLKQNEKDAYQKRCEQRKKEYEIEMNRFLSSLS
EEEQRRVLGEEKVGFKRGGRANSPATKKQASKAKANPEKPKRPISAMFIFAEEKRQKLQQ
ERPDLSDSEVTRYLARMWNDLPDKKKEKYKRLELVLKAESEKKEKEDRSRLPDPPKTAQD
IWQQSVIGDYLARFKNDRPKAQKAMEGAWSTMEKKEKIMWIKKAAEDQKRYERDLCEMRS
PAAAAIASGKKMKFEGEPKKPPSNGYQKFSQEMLSNGELNHLPMKERMAEIGSRWQRLPL
KDKDRYKKIAEEKQRQYKVLLEQWLASLSTQERNVYKEYISQKRRNPSKPGGPLVKFKKS
DTEEEEDDDDDDDDDEQEKASSEGDSSSDDEDDDDDKEGDDDDDDDDDDDDDDDDDDEAE
DKENKSEDSSSESNSAGSSDSDSD
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgaatggagaaatggaggcaacagcccaagatcaagtgtgggcgcaggaagacctccta
agactgctggaggccatgaaggtggccctgccacagaaagacttgacaaaatacaaaacg
tcagagtcccacctggactggcagaaggtggctttcaactcctacacggcagagatgtgc
cggctgaagtggctggaagtctcaaaggagattcgtaagtttagaactctgacggagctg
atagttgatgctcaagattacatcaagaatccctataaaggcaagaaaattaagaagcat
cccgatttccccaagaagcccttgactccatactttcggttcttcatggagaagagggcc
aaatatgcaaagctgcatcccgaaatgagcaatttggatctgacaaagatcctttccaag
aaatacagggaattaccagacaaaaagaagaaaaaatatgttgaagatttccttcgagac
aaagaggcgtttgtgcagagcatgatgaaattcagggaagagcatccggatcttgtggag
acgattaccaagaaaggttcaaatgtcccagaaaaacccaagacgccgcagcagctttgg
tacaaccatgaaaagaaggccttcctaaagacacgccctgatgcgaccaccaaagatatt
aaggacagtcttggcaaacagtggacacagctgcctgataaaaagcgactaaagtggatc
tctaagtctctggagcagcagaaagtgtatgaggaaacgatgcgggggtacatccagcag
cacccggagctgaacatgactcaggaagattacgtcaagtccatcctgactaaggccgag
cgccacctgaaggacaaatccgacggccgacccgacaagcctcctccaaacggctactcc
atgttctgcgcggagctcatgtccagcatgaaggacgtccccagcacagagcgcatgatg
atgtgcagccagaggtggaagctgctgaagcaaaacgagaaggacgcctaccagaaacgc
tgtgaacagaggaagaaggagtatgagattgaaatgaacagatttctcagttctttatca
gaggaggagcagcggcgagtgctgggggaggagaaagtgggctttaagagaggaggtcga
gccaacagtcctgccacgaaaaaacaagcctccaaagcaaaggccaatccggagaaaccc
aaaaggcccatttctgccatgttcatatttgctgaggagaagcgtcagaagctgcagcag
gagaggcctgacctctcagacagcgaggtcaccagatacctggcgcggatgtggaacgac
ctgccagataagaagaaggagaagtataaacgcctggaattagtcttgaaagcggaatcg
gagaagaaggagaaggaggatcgaagtcgtcttccagatccacccaagactgctcaggac
atttggcagcagagtgtaatcggagactaccttgccagatttaagaatgaccgtcccaag
gcacaaaaagccatggagggagcctggagcaccatggagaagaaggagaagatcatgtgg
atcaaaaaggcagcagaggaccagaagagatacgagagagacctgtgcgagatgcgctct
cctgccgccgccgccatcgcctcagggaagaaaatgaagtttgagggtgaacccaagaag
ccgccctcaaatggatatcagaagttttctcaggagatgctctccaacggggagctcaac
caccttccgatgaaagagcggatggccgagatcggcagccggtggcagaggttacccctg
aaggacaaggatcgctacaagaagattgccgaggagaagcagaggcagtacaaagtcctg
ctggagcagtggctcgctagtctgtctactcaagaaagaaacgtctacaaagaatatata
tcacaaaaacggagaaacccttctaaacccggcggccccttagtgaagtttaagaaatct
gacactgaagaggaggaagatgatgatgatgacgacgatgacgacgagcaggagaaagct
tcgtctgagggagactcgtccagcgatgatgaagatgatgacgatgacaaggagggagac
gacgacgacgatgatgatgacgatgatgacgacgacgatgatgacgatgacgaggcagaa
gacaaggagaacaagtcggaggacagcagcagcgagtcaaactctgccggctcgtcggac
tcggattcagactaa
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