Oryzias melastigma (Indian medaka): 112146053
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Entry
112146053 CDS
T07439
Symbol
bptf
Name
(RefSeq) nucleosome-remodeling factor subunit BPTF isoform X1
Organism
oml
Oryzias melastigma (Indian medaka)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD
Bromodomain
DDT
WSD
PHD_5
ASH2L-like_WH
Motif
Other DBs
NCBI-GeneID:
112146053
NCBI-ProteinID:
XP_024127410
LinkDB
All DBs
Position
LG8:complement(20286909..20316077)
Genome browser
AA seq
3344 aa
AA seq
DB search
MRGKRGRQAKPLQTEEPSPASTRGLRPRRNLKPRFRDSGDEDGDSPIRENPKPNRRRRGG
SGASTRGRGRGRGGGGGRGGRGGRGGRRTGAPKTVVYDDHESDEDDDAVSLRSEEDEFVE
EEPQSEEDEGLKEDSDCLEDDVLDEEEDQDAASYCTESSFRSQSTHASTPGRKKLPVPRP
RTPILEDKEIPSLELPETSEDLLVPNEELLNITSIYEVLRNFNTVLRLSPFRFEDFCAAL
AGQEQCTLIAETHISLLKAILREEDSSNTTFGPADLKDSVNSTLYFIDGMTWPEVLRSYC
ESDKEYHHVLPHLEMDGYPCGPLESKVKVLQFLVDLFLTTNIAREELMSDGTMQYDDHCR
VCHRLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEICVAHKVSGVSNCVTEAQKNRP
YIRQEPIGYDRHQRKYWFLIRRIIVEEDGEHEKKKIWYYSSKVQLEELMECLDKEYWETD
LHATLEELMEEVQAHMDITEELTHRARGNNKAYLTTANDVVTERLKIRRAAKQEAKRRAE
EAKQEAESASMNPAEEKAQPSSELEKAEGSESMGDGSSQAASVQPAAGDNPASTAQDPPA
PKADSLDSKHNEAQAADCETQESGEVKQGRTDELKEDSLTPTQDPPHQPEAPGDQNPAGV
GLTKPEPADLADRSSQSSYTSQDRTDDNERMKNGRAAGSELKAPISRGSKESSPVPFDCD
SWRLSLLKRELTTSLNNLFKLGQEGKYRVYSNQYSINLLALNKHQHREDHDKRRHLSHKF
SLTTASEFKWNGSIYGSRSLTVSTLRLTIIQLETSVPAPFMHPNWASHRNNWNKAVQMCS
KAREFALALAILECAIKPVVTLPIWKDSLGHTRLHRMTAMEREEKEKVKKREKKLEDEEI
LQQATWVKYTFPIKHQVWKQKGEEFRVTGYGGWCWVSKTHVPRFVPKLPGNTNVNYRKEL
EAKRSKENAAGRTNEQKDLTQASKTGEDEEHPSSTAKPNCSSVEEDSKPQTIKEEEPGKP
DEMKEEEKMEVEASTSASTETKEKDQLKEAVIEEIKQKSEPPKTENAESKLFYDVVNVSE
GFQLRTAYKKKVKPSKLDGLLERRVKQFTLEEKQRLERLRLAALQPKTAPAAAAKLPAVK
TEGLKRPEPAVTPGVKAEEESVQVRDHVVKKLDFDLEHANTTSSADAKTQGIHGNSEDVH
KELNGEPEPNRHKNSEDAPVEEVSKKRSFEEIKQSSRNSDTESSEGPQSKSSPSQVNGET
PPEDPDISSDSASRVQEDVKEPPREHLKSLMNGNLSQKDLSNMAHPPPLKVPKLENHVGD
EPQNQEGPEPTKLEPPASLGSKHPENCTSSETLKTSIPNATPQEPKNPPLHDTPDVTSSK
PPPPNNQHSSVVTSSLKKRFGDAKGSSSAVAPAVSMTISKEYSTRDRVTLLKFSKTKKAR
SGTALPSYRKFVTKSSKKSIFVLPNDDLKRLARKAGFREVPIFNYNAKPATDIWPYPSPR
PTFGISWRYRLQTVRSLAGVSLMLRLLWACLRWDDMAIKPSSAVGTTRKETTDTDIITTE
IIKRRDVGPYGIRSEYCIRKIICPLGNRDTPKAETPTPQRKGLRSSALRPKKQEPAKLSG
PVAVETWVPEEELELWEIRAFAERLEREKSQGIDSSKSSTLKTAEEVKAHLENQLKQARL
AAQQKRLEQPRLNTTAATSTTTTITTTVPSTPTPLRSGQAATGAKMVLASKLGSPVSFQQ
DKNFHQSFASWVKQGQNNNSSAGAGQQKVVSIFPSGPPANLRTYSALHPTTGNINLRSAP
PSSNTQQQAVTTGGQTTPSTTATVSPSTSTMRTSAPVQQASPQQALPQMNRNLQPAATGS
AAAPSPAPAGQTFAAPAQKPQQGQVKLTMAQLMQLTQGAQGGNPGLTVVIQGQGQTQGQL
QIIPQGVTVIPGPGQQLMQAAMPNGQVQRFLFTPMTPSSSAAPSTSAAPAKPVLAQTPQT
QIPAQVQAQVHTTPSSLAQTQMTAPLPAPIHATTPSPSLSSAHSPVSAPVRTPVVASAPA
PPQAVAQSALQTQIPVPAPSPVPAPSPSLVGAQHLTPTSPSVSIQPPSSPSVTPRQVLVS
QPTQNQTSAHIPAMTPSTTLMPNTSLIPNTALTPNTSLIPNTALTPNTSLIPNTSLIPNT
SLMPNSTLIPNTSLMPNSTLIPNTALTPSTTLIPNTALIPNSTFTPNTALTPNITFTSNS
ALRSNYALTTSSTLLPNAALTAIASVTPNTTPTPNTVLMANTSLTPSTSFTPNTTLATNT
SLLANITQTASTTFTPNTTPVKTTSLLPVPRSQIQPQSFSAAPSLIPTSVPVQISSSSAV
TVRSLIQVASAAPPPILTQIPVSPSLPCPVQAPTSALTPISAPVMTALSAQSPVPSPAKP
ATQILAAVSVPPLAAVANAVVTPVTATSTTPSVPARIEQKAAQPQVWPPAFSEPQTAVQT
AQQAAAPVTPPALVSVPASVSVPTASPITPLPQPPLTPPPQAQAQPTAVISTQQLPQAIS
AVQVHVKGLPVSSVVSPTRPTQLLHQAQMCTQAQQMPHIQTPAQIHPQIQVQFQPRGLQP
QTQIQLQSPTKTVAPLQTQTQAQFQAQLHAGQPQYHQVQASFQAKPQTEPQVLSQPQTQI
QLQPQPQIQTQLHPQVQLQQQNQVQSHTALQPQLHIQSHVQTQPQFTVQASQPARVTQQL
QVQAPAQVQAKLQVQFQPQSQSQVQTQPQIQVQSPIRHQLITVPGLQQPVQLLSALPPHV
AAQIQAQIQAQAQQQGGAVPQQIKLQLPIQIQQKTGPIQAHQIQNMVTIQTSAGVQEQLP
RIQPQQQVQHVPKKKKPHEAKREQKEQTAQVLSPKDGSQKQVILKQNSAAEQLKQRKTQA
AAEREENQRMIVCNQVMKFILDKIEKDEKQAAKKRKKEEVVEQKRSKQNATKLTALLYKH
KEQLKAEILKKRALLDKELQLQVQEELRRDLARLQREKEKARAAIAQAAAATVKAAAAQS
SHLVQPPQIPHATAPQSSTHKRKRDDEREKEKSRDRDRHHEKSKKRDKDRDRHREREREK
ERDQERDRHRERDKDEDRDKERDSKHKKKKKKLSSTSKDHKKDTKLYCICKTPYDESKFY
IGCDLCSNWFHGACVGITEKEAKKLEDFVCNDCKRSQDGGCSEELYCICRTPYDESQFYI
GCDRCQNWYHGRCVGILQSEANHIDVYVCPQCQSTEDAMTVLSPLTDKDYEGLKRILRSL
QSHKMAWPFLEPVDPHDAPDYYRVIKEPMDFSTMETHLQKRHYQKLTEFVADVTKIFDNC
RYYNPNDTPFFQCAEVLEAFFVQKLKGFKASRSHNNKLQSSSAS
NT seq
10035 nt
NT seq
+upstream
nt +downstream
nt
atgagagggaaaaggggcaggcaggccaaaccgctacaaaccgaagaaccgtccccagct
tccaccaggggcttacgaccgaggaggaacctgaaaccccggtttcgggacagtggggat
gaggacggtgatagccccatcagggagaaccccaaaccgaacagaaggaggagagggggg
tctggagcgtcaacgcggggcagaggacgaggcagaggcggcggcggcggtaggggaggc
agaggcggacggggtggaaggcggacgggggcacccaaaacagtggtgtacgacgaccac
gagagcgacgaggacgacgacgcggtgagcctgaggtctgaggaggacgagtttgttgaa
gaggaaccccagtctgaggaggacgagggcctcaaagaggactccgactgcctggaagat
gatgtgctggacgaggaggaagatcaagatgctgctagctactgcacggagagcagcttt
cggagccagagcacacacgccagcactccggggaggaaaaaactgccagttccccgtcct
cgcactcccattctcgaggacaaagagattccttctcttgagcttccagagacttccgag
gacctcctggtgcctaacgaggagctgctcaacattacctccatctacgaggtcctacgg
aacttcaacacggtgctgcgtctctccccctttcgcttcgaggacttctgtgcagcgctg
gccggacaggagcaatgcacgctcattgcagagacccacatatccctgttgaaagccatc
ctccgtgaggaggactcttccaacactaccttcggccctgcggaccttaaagacagcgtc
aactccactctgtatttcatagatgggatgacgtggcctgaggtgttgcggtcttactgc
gaaagtgacaaggagtaccaccatgttctgccgcacttggagatggacggttatccttgt
ggtcctctagaaagcaaggtcaaggttctacagttcttggtggatctgttccttaccacc
aacattgctcgcgaggagctgatgtcagacggaacgatgcagtacgacgaccactgccgg
gtgtgtcaccggctaggcgacctgctgtgctgtgagacctgctcggcagtgtaccacctc
gagtgtgtgaaaccgccgctggaggaggttcccgaggacgagtggcagtgtgagatctgt
gtggcgcacaaggtgtctggggtgtcgaactgcgtgacagaggcacaaaaaaacagaccg
tatatccgccaggaacccattggatacgatcgccaccagaggaagtactggtttctcatt
cggaggattattgttgaggaggatggggagcacgagaagaagaagatctggtactacagc
agcaaggtgcagctggaggagctcatggaatgcctggataaggaatactgggagacggat
ctgcacgccaccctggaggagctgatggaggaggtgcaagctcacatggacatcacagag
gagctgactcacagagcccggggaaacaataaagcctacctcacaactgccaacgatgtg
gtcacggagcgtctgaagatcaggcgggcggcgaagcaagaagctaagaggagagcagag
gaggcaaagcaggaagctgaaagcgcctccatgaatccagcggaggagaaagcccagccc
tcgtcggagcttgagaaggcggagggatccgagtcgatgggagacgggagctcacaagcc
gcttctgttcaacctgccgcaggagataaccccgcctccactgctcaggacccccctgca
cctaaagcagactcgcttgattccaaacataatgaagcacaagctgctgattgtgagacc
caggagagcggggaggtgaagcagggaaggacagatgagctcaaagaagactcgctcaca
ccgacccaagatcctccccatcagcccgaagcacctggtgaccagaatcctgcaggtgtg
ggcctcacaaaaccagaaccggcggacctggctgaccggtcctcccagtcctcatacacc
agccaagacaggaccgacgacaacgagaggatgaagaacggcagagctgcaggatctgag
ctgaaggccccgatatccagaggcagcaaagagtcgtcccccgtccccttcgactgtgac
agctggcgcctcagcctcctaaaaagagaactcacaacgagtttgaacaacttgttcaaa
ctgggtcaagaagggaaatacagggtctacagcaaccagtacagcatcaacctgctggca
ctcaacaagcaccagcaccgggaggaccacgacaagaggcggcacctctctcacaagttc
agcctgaccacggcgtccgagttcaagtggaacggctccatttacggctcgaggagtctc
accgtttccacgctgcgtctcaccatcatccagctagaaaccagcgtcccggctccgttc
atgcaccccaactgggcgtcgcacagaaataattggaacaaagcggtccagatgtgcagc
aaagcccgggaatttgctctggctttggcgattctggaatgtgcaatcaagcccgtggtt
acactccccatctggaaagattcactcggacacacaaggctgcatcgcatgaccgccatg
gagcgggaagagaaggagaaggtaaagaaacgagagaagaaactggaggatgaagagatc
ctccaacaagccacgtgggtgaagtacaccttccccatcaaacaccaggtctggaagcag
aagggcgaggaattccgggtgacgggatacgggggctggtgctgggtcagtaagacccac
gttccgcggtttgtcccgaagcttccaggaaacacaaacgtgaactaccgcaaagaactg
gaagctaaaaggagtaaagaaaatgctgccggtcgcacaaacgagcagaaagatttgaca
caagcgtccaaaactggtgaggatgaagaacatccgtcctcaacagccaaacccaactgc
agttctgtagaagaggacagcaaacctcagaccatcaaagaagaggagccgggaaaacca
gacgagatgaaagaagaggaaaaaatggaagttgaagcttcaacttctgcttcaacggag
actaaagaaaaagatcaactcaaagaggctgttatagaggagataaagcagaaatctgag
ccacccaagacggagaacgcagagtccaaacttttctacgacgttgtgaacgtcagcgag
ggcttccagctgcggacggcttacaagaaaaaggtgaagccgtccaaactggacggactc
ttggagcggcgagtcaaacagttcacgctggaggagaagcagagactggagcggttgaga
ctggcagcactgcagcccaaaacggccccagccgctgctgcaaagctgcctgcagttaaa
accgaaggtttaaaaagaccagaacctgccgtgaccccaggggtcaaagcggaggaggag
agtgtgcaggtgagggaccacgtggtcaaaaaactggactttgatctggagcacgccaac
acgaccagcagtgcagacgccaaaacgcaaggaatccacggaaacagtgaggacgtccac
aaagaactgaatggagaacccgaacccaaccgccacaagaactctgaggacgctccagtc
gaggaggtttctaagaagcgaagcttcgaggaaattaagcagagcagcagaaactctgac
actgagagctccgaggggccccaaagtaagagcagtccatcgcaggtcaatggagaaact
cccccagaagatccagacatcagctccgactctgccagccgagtccaggaggacgtgaaa
gagcctccgagagaacatctaaagtctctgatgaacgggaacctctcacagaaagatctg
tccaacatggctcacccgcccccccttaaagtcccaaagttagaaaaccacgttggagat
gaaccccaaaaccaggaggggccagaaccaactaagctggaaccgccagcttctctgggg
agtaaacatccagaaaactgcaccagcagtgaaactttgaagacttccattcccaacgcc
actccacaggaacccaaaaacccgccccttcatgacacacctgacgtgacgtccagcaag
ccacctccccccaacaaccagcacagttctgtagtcacctcctccctcaagaaaagattt
ggcgacgccaaaggcagctcctctgccgtggccccagctgtttccatgaccatcagcaag
gagtattccaccagagaccgcgtcaccctgcttaagttttccaaaaccaagaaagcccgc
tcaggaacggccctgccatcctaccgcaagtttgtgaccaagagcagcaagaagagcatc
ttcgttctgcccaacgatgacctgaagaggctggccaggaaggccggcttcagagaagtg
cccatcttcaactacaacgccaagccggccacagatatctggccgtacccgtcaccgcga
cccacctttgggatctcctggaggtaccgtctgcagactgtgaggtctctggcaggagtc
agcctgatgctgcggctgctgtgggcctgcctgaggtgggacgatatggccatcaagccg
tcgtctgctgtaggaacaacccgcaaagaaaccacggacacggacatcatcacaacagag
atcattaaacgaagagatgtgggaccttatggcatccgctcagaatactgcatcaggaag
atcatctgccccctgggaaacagagacacccccaaagcagaaactccaactcctcagagg
aaaggtctgcgttcaagtgccttgaggcccaaaaagcaagagccggccaaactgtctgga
cctgtcgccgtggagacgtgggtgcctgaggaggaactggagttatgggagatccgagct
tttgcagagagattggagagagaaaagtcccaaggaatagactcctccaaaagcagcact
ctcaagaccgctgaggaagtgaaggcccatctggagaatcagctgaagcaggccagactg
gcggctcagcagaaacgcctcgagcagcctagactaaacacaactgctgccacttccacg
accaccaccatcaccaccacggtacccagcacccctacccccctgaggtcaggacaggct
gccactggagccaaaatggtgctggcctccaagctcggctccccagtttccttccagcaa
gacaagaacttccaccagtcctttgcttcctgggtcaaacagggtcagaacaacaacagc
tctgcaggtgcaggtcagcagaaagttgtcagcattttcccctctgggcctccagcgaat
cttaggacctacagcgcactacaccctacaacgggcaacatcaacctcagatctgcaccc
ccgtcctcaaacactcagcagcaggctgtcaccacaggaggccagacgacgccgagcaca
acggcgaccgtttctccatctacctccaccatgagaacttcagctccagttcaacaagct
tcacctcagcaggctttgccccagatgaatcgtaatcttcaaccagccgccacaggttct
gccgcagcgccatctcctgcccctgcaggacagacctttgctgctccggcccaaaaaccc
cagcagggtcaagtaaagctgacgatggctcagcttatgcagctgacacagggggcacag
ggaggaaacccaggactaacggtggtgattcagggtcaaggccagacccaggggcagctt
caaatcatcccacagggcgttactgtcatccccggtcctggtcagcagttaatgcaggcc
gccatgcccaatggtcaggtgcagcgcttcctcttcacacctatgaccccgtcctcctcc
gctgcaccttccactagtgctgctccagcaaaacctgtcctcgcccagacccctcagacc
cagatacccgcccaagtccaagcacaagtccacaccactccatcctctctggcccaaaca
caaatgactgcaccactgcctgccccgatacacgccacaaccccatcaccaagcttaagc
tccgcccacagcccggtttctgctcctgttcgaaccccagtggttgcctctgcacctgct
ccgccccaggctgtggctcaatctgccctgcaaacacagattcctgtcccagcaccatca
cctgttccagctccgtcaccaagtttggttggagcgcagcatttaacccccacctctccg
tcagtttccatccagcctccatcaagcccgagtgtgactcccagacaagtcctggtctca
cagcccacacagaaccaaaccagcgcccacatccctgccatgacacctagcaccaccctg
atgcccaacacctccctaatacccaacaccgccctgacgcccaacacctccctaataccc
aacaccgccctgacgcccaacacctccctaatacccaacacctccctaatacccaacacc
tccctgatgcccaactctaccctaatacccaacacctccctgatgcccaactctacccta
atacccaacaccgccctgacgccgagcaccaccctaatacccaacactgccctgataccc
aactccacctttactcccaacaccgccctgacgcccaacatcacttttacatcaaacagc
gccctaagatccaactacgccctgaccaccagctccaccctattacccaacgccgccctg
acagccatcgcctctgtgacgcccaacaccacccctacacccaatacagtcctgatggcc
aacacttccctgacacctagcaccagctttacaccaaacaccactctggccaccaacact
tcccttttagctaacatcacccagacagccagcaccacttttacacccaacaccacccct
gttaagactacaagtttgcttccagtcccgagatcccaaatccagcctcagtccttcagt
gctgctccaagcttaatcccaacctctgttccggtgcaaatctcttcttcatctgcagtg
accgtcaggtctctaatccaagttgcttctgcagcacctccacccatcttgacccaaatc
ccagtttctccctcacttccttgccccgtccaggctccaacgtctgccctcacacctatt
tctgctccagtcatgactgctctgtctgcgcaaagccccgtcccatcacccgccaagcca
gcaacccagatcctcgctgcagtttctgttcctccacttgcagccgtagcaaacgctgtt
gtgacaccggtcacagccacctccaccacaccttcagtgccagctcggatagagcagaag
gccgctcagccccaagtctggcctccagccttttcggaacctcagactgcggttcagaca
gctcagcaggctgcagctccggtcacaccacctgccctggtgtctgtacctgcctctgtc
tcagtccccacagcctccccaatcactcctttgcctcagccacccctgactcctccccct
caagcacaagcccagcccactgctgtgatatccacacagcagctgccacaggccatctca
gcagtgcaggttcatgtgaaggggttacccgtctcctctgtggtgtcccccaccagaccc
acgcagcttctgcaccaggcccaaatgtgcacacaggctcagcagatgccacacatccag
actccggctcagattcacccccagatccaggttcagttccagccgagaggacttcagccg
caaactcaaatccagcttcagtctccaacaaaaactgtggcccccctacagactcaaacc
caagcacaattccaggcccagctccacgcagggcagcctcagtatcaccaggttcaagca
tcatttcaggcaaaaccacagacagaaccacaagttctatctcaacctcagacccaaatt
cagcttcaacctcaaccccagatccaaactcaactccatccccaagtccagcttcagcag
caaaaccaagttcagtctcacacggccctgcagccccagctccacattcagtcacatgtc
caaacgcagccccagtttacagtacaggcctcacaaccggcccgggtcacgcagcagctc
caggtccaagctccggcccaagtccaggccaaactccaagtccagttccaacctcaaagt
cagtctcaagtccaaacacagcctcagatccaggtccagtcccccatcaggcatcaactc
attactgttccaggtctccaacagccggtccagctgctgtccgctctgccgccgcatgtg
gcagctcagatccaggctcagatccaggcgcaagcccagcagcagggaggcgccgttccc
cagcaaatcaagctgcagctccccatccagatccagcagaaaactggcccaattcaggcc
caccaaatccagaacatggtgaccattcagacgtcggcaggagtccaggagcagcttccg
aggattcagccgcagcagcaagtccagcatgtgccaaagaagaagaaaccccacgaggct
aaaagggagcagaaggagcagaccgcgcaggtgctgagtcctaaagacggctcgcagaaa
caggtaatactgaagcagaattctgcagcagaacagctgaagcaaaggaagacgcaggct
gctgcagaacgagaggagaaccagagaatgatcgtgtgcaaccaggtgatgaagttcatc
cttgacaagatcgaaaaggatgagaagcaggccgctaagaaaaggaaaaaggaagaggtg
gtggagcagaaacgctccaagcagaacgccaccaagctgaccgccctgctgtacaaacac
aaagagcagctgaaggctgaaatcctgaagaagagggcgctgctggacaaggagctgcag
ctgcaagtgcaggaggagctgaggagagacttggcgaggctacagcgggaaaaggagaag
gcccgagccgccatcgcccaggccgccgcagcaacggtaaaggcagccgccgcccagtcc
tctcacctggttcagccgccacagatcccccacgccacggcgcctcagtcctccacccac
aagcggaagcgagatgacgagagagagaaggagaagagcagagatcgggacagacaccac
gagaagagcaagaaacgtgacaaagacagagaccggcaccgagaacgggagcgggagaag
gagcgagatcaggagcgcgacagacaccgagaaagagacaaagacgaggacagagacaag
gagcgagactccaaacacaaaaagaagaagaagaaactgtcttctacctcaaaagatcac
aagaaggacaccaaactgtactgtatctgcaaaacgccctacgacgagtccaagttttac
atcggctgcgacctgtgctccaactggttccacggcgcatgcgtcggcatcacagagaaa
gaagccaagaagttggaggactttgtgtgcaacgactgcaagcgtagccaggatggaggc
tgcagcgaggagctgtactgcatctgccggacgccgtacgatgaatctcagttttacatc
ggctgtgaccgctgccagaactggtaccacgggcgctgtgtgggcattctacagagtgaa
gccaatcacatcgacgtgtacgtctgtccacaatgtcagtccacagaggacgccatgacg
gttctctcgccgctcacagacaaagactacgagggcttaaaaagaatattgcgttcatta
cagtcacacaaaatggcgtggcctttcctagagccggtggatccccacgacgccccagat
tattatcgggtcatcaaggaaccaatggatttctccaccatggaaacccatctgcaaaag
cgacattaccagaagctcacggagttcgtggcagatgtgaccaaaattttcgacaactgt
cgctactacaaccccaacgacacccccttctttcagtgtgcggaggtgctggaggccttc
tttgtgcagaagctgaaaggctttaaagcgagcaggtctcataacaacaagcttcagtct
tcttcagcctcttag
DBGET
integrated database retrieval system
