Oryzias melastigma (Indian medaka): 112146092
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Entry
112146092 CDS
T07439
Symbol
smarca4a
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112146092 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112146092 (smarca4a)
03036 Chromosome and associated proteins [BR:
oml03036
]
112146092 (smarca4a)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112146092 (smarca4a)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
112146092 (smarca4a)
Chromatin remodeling factors
BAF complex
112146092 (smarca4a)
PBAF complex
112146092 (smarca4a)
GBAF(ncBAF) complex
112146092 (smarca4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
112146092
NCBI-ProteinID:
XP_024127502
Ensembl:
ENSOMEG00000007486
LinkDB
All DBs
Position
LG8:19798733..19819393
Genome browser
AA seq
1618 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGGMLGPSPGPSPGSAHSMMGPSPGPPGSGHPHPPQG
PSGYPQDNMHQMHKPMEAMHEKGMPDDPRYSQMKGMGMRPGGHSGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPVPANGPPSGPGAGPMEAGGDPSQVMGQPNRGAPQGPGVPPGPGGPPG
GAGGPASFTQNQLHQLRAQIMAYKMLARNQGLPEHLQMAVQGKRPMPGMQQQPMPNMPPS
AGPGGGPGAGPGPAQANYNRPHGMVGPNMVPPGPAGVPPGMQGQPANGPPKSWPEGPIVN
AAAPSNPPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPAQPPPMMLHQKQNRI
TPIQKPRGLDPVEILQEREYRLQARITHRIQELENLPGSLAGDLRTKATIELKALRLLNF
QRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKH
QEYLNSILQHAKDFKEYHRSITAKIQKATKAVATYHANTEREQKKENERIEKERMRRLMA
EDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAAQALKEKKKKKKKKKPESA
ESGAASLGPDGEPLDETSQMSDLPVKVIHVDSGKILTGVEAPKAGQLEAWLEMNPGYEVA
PRSDSEDSGSDDDDDEEDDEEEKPSTAPAEEKKKIPDPDSEDVSEVDVRHIIDNAKQDVD
DEYGNASFQRGLQSYYAVAHAVTEKVDKQSSLLVNGQLKQYQIKGLEWLVSLYNNNLNGI
LADEMGLGKTIQTIALITYLMEYKRINGPFLIIVPLSTLSNWVYEFDKWAPSVVKVSYKG
SPVARRAFVPILRSGKFNVLLTTYEYIIKDKQVLAKIRWKYMIVDEGHRMKNHHCKLTQV
LNTHYLAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDL
NEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV
LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPFMFQHIEESFSEHLGYSGGIVTGPDLY
RASGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRSFKYLRLDGTTKAEDRG
MLLKTFNDPASEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ
NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSGYERRAFLQAILEHEEQ
DEEEDEVPDDETVNQMIARSEEEFEQFMRMDLDRRREEARNPKRKPRLMEEDDLPNWILK
DDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGNLEDIEEEVRHKKT
TRKRRRDRDHDGGSSSLGSSSRGRDKDEEVKKAKKRGRPPAEKLSPNPQSLTKKMKKIVD
AVIKYKDSNGRQLSEVFIQLPSRKELPEYYELIRKPVDFRKIKERIRSHKYRSLNDLEKD
VMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDESEGEESEEEEEDVDEGSES
ESRSVKVKIKLSRKEKGDRGGKGQKRRGRGSRAKPVVSDDDSEEEQEEERSASGSDDD
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atgtccactcctgaccccccgatgggagggacacctcgcccgggtccctccccaggtccg
ggtccatctccgggcggcatgctgggccccagtcccggaccctcgccgggctcggctcac
agcatgatggggcctagcccaggacctccgggatcgggacacccccaccctccacaggga
ccctcaggatatcctcaggacaacatgcaccagatgcacaaaccaatggaagccatgcat
gaaaaaggaatgcccgatgaccctcgctacagtcagatgaagggcatgggcatgagaccg
ggaggacacagtgggatgggaccccctccaagcccgatggatcaacattcccaaggttac
ccgtctcctttgggagggtcggagcacgcgcccagtcctgtcccagccaacggccccccc
tcaggccctggggctggccccatggaagccggaggcgaccccagtcaggttatgggccaa
ccgaaccgtggtgctcctcagggcccgggggtgccacctggtcctggcgggccaccgggt
ggtgccggtggacccgcttcttttacccaaaaccagctgcaccaactcagggctcagatc
atggcttacaagatgctagcacggaatcaggggcttccggaacacctgcagatggccgtt
cagggcaaaagacccatgcccgggatgcagcagcagcccatgccaaacatgcccccctct
gcaggacctggaggcggccccggtgccggcccgggaccagctcaggccaactacaacaga
ccacatgggatggtaggtcccaatatggtccctcctggacctgcaggagttccacctggt
atgcaaggccagcctgccaatggacctccaaaatcatggcctgaaggaccaatcgtgaac
gctgctgctccatccaaccctcctcagaagctgattccacctcagcccaccggcagaccc
tctcccgctcccccctcagtgcctccagctgcctctccggtgatgcctcctcagacgcag
tccccgggccaacctgcacagcctccccctatgatgctgcaccagaagcagaaccgcatt
acccccatccagaaaccccgcgggctggaccccgtagagatcctccaagagagagaatac
aggcttcaggctcgtatcactcaccgcatccaggagctggagaacctgcccggctctctg
gctggtgatttacggaccaaggccaccatcgagctgaaggccttgaggcttctcaacttc
caaagacagctgcgtcaggaggtggtggtttgcatgcggcgggacactgctctggaaacc
gcgctgaacgccaaagcttacaaacgcagcaaacgccagtctctgcgagaggcccgcatc
acagagaagctcgagaagcagcaaaagatcgagcaagagcggaaacggcgccagaaacac
caggaatacctcaacagcatcctgcagcacgccaaggacttcaaggagtaccaccgctcc
atcacagcaaaaatccagaaggccaccaaagctgtcgccacttaccatgccaacacggag
cgcgagcagaagaaagagaacgagcggattgagaaggagagaatgcggaggctgatggct
gaagatgaagaaggttaccgtaaactcattgaccaaaagaaagacaagcgtctggcttac
ctgctgcagcagacggacgagtacgttgccaacctcacggagctggtgcgcgcccacaaa
gctgctcaggccctaaaggagaagaagaagaagaagaaaaagaagaagccagagtctgca
gaaagtggtgctgcttctttaggacccgatggagagccgttggacgagaccagtcagatg
agcgacctgccggtcaaagtcatccacgtggacagcggaaagattttgactggagttgaa
gcgcccaaggccggccagctggaagcctggctagaaatgaacccaggatacgaagtagca
ccgcgttcagacagtgaagacagcggctcagatgatgatgacgatgaagaggacgatgag
gaggaaaaaccctctacagccccagcagaggagaagaagaagattccagaccccgacagc
gaagacgtgtcagaagtggacgtccggcacatcatcgataacgccaagcaggatgtagac
gatgaatacggcaacgcaagtttccaacgcggcctgcagtcgtactacgctgtagctcac
gccgtcacagaaaaggtggataagcagtcctccctgctggtcaacgggcagctcaagcaa
taccagattaaaggtctggagtggctggtgtcactttacaacaacaacctgaacggcatc
ctggctgatgagatgggtctggggaaaaccattcagaccatcgccctcatcacttacctc
atggagtacaagcgcatcaacggacccttcctcatcatcgttcctctctcaactttgtca
aactgggtgtacgagtttgataagtgggctccgtctgtggtgaaggtctcatacaagggc
tctccagtcgctcgccgtgcttttgttcccatcttgcgcagcggcaaattcaacgtgctg
ctaaccacctacgagtacatcatcaaggacaaacaagtgctagctaagatccgttggaag
tacatgattgtggacgaaggtcatcgcatgaagaaccaccactgtaagctgacgcaggtg
cttaacacgcactacttagcgccccggcgtttgctgctcacgggcacgccgctgcagaac
aaactccccgagctgtgggcgctgctcaacttcctgctgcccaccatcttcaagagctgc
agcaccttcgagcagtggttcaacgcccccttcgccatgacgggggagaaggttgatctg
aatgaagaggagaccatcctgattatccgccgtttacacaaagtgctgcgaccgttcttg
ctgcgcagactcaagaaggaggtggaggcgcagctgccggagaaggtggagtatgtgatc
aagtgcgacatgtcggcgctgcagcgagttctgtacagacacatgcaggcgaagggggtc
ctgctcacagacggctccgaaaaagacaagaagggtaagggaggtaccaagaccctgatg
aacaccatcatgcagctgagaaagatttgcaatcatcccttcatgttccagcacatcgag
gaatcgttttcggagcatttaggttattctggaggaatcgtgaccgggcccgacctctac
cgggcttctgggaaatttgagctgctagatcggattctgcccaagctgagagccacaaac
cacaaagtgctgctgttctgtcaaatgaccaccctcatgaccatcatggaggactacttc
gcctaccgcagcttcaagtatctgcgtctggatggaacgaccaaagctgaggaccgaggc
atgctgctgaagacgttcaacgacccggcctcggagtacttcatcttcctgctcagtacc
agagccggaggtctgggtctgaacctgcagtctgccgacactgtgatcatttttgacagc
gactggaacccccaccaggacttgcaggctcaggaccgagctcatcgcatcggtcagcag
aacgaggtgcgtgttctgcggctctgcaccgtcaacagcgtggaggagaagatcctcgca
gcggccaagtacaaactgaacgtggaccagaaggtcatccaggccggcatgttcgaccag
aagtcctcgggctatgagcggcgggcgttcctgcaggccatcctggagcacgaagagcag
gacgaggaggaagacgaggtgcccgatgatgaaaccgtgaaccagatgattgccaggagt
gaggaggagtttgaacagttcatgcgcatggacctggacaggcgccgcgaagaagctcgc
aaccccaagaggaaacctcgtctgatggaggaggacgacctccccaactggatcttaaag
gacgacgccgaggtggagaggctaacctgcgaagaggaggaggagaagatgttcggcagg
gggtcccgccagcggaaggaggtggactacagcgactcgctcacggagaagcaatggctg
aaggccatcgaggaaggtaatctggaggacatagaggaggaagtgcgccacaagaagacc
accaggaagcggaggagggaccgggaccacgacggcgggtcctcctcgctgggctccagc
agccgtgggcgcgacaaggatgaggaggtgaagaaggccaagaaacgaggccgtccgcct
gcagagaagctctcccccaatccgcagtccctcaccaagaagatgaagaagatcgtcgac
gccgtcatcaagtacaaggacagtaacggccgacagctgagcgaggttttcatccagctt
ccttctcgtaaagagctgccagaatattacgagctcatccgcaaacctgtcgacttcaga
aagatcaaggagaggatccgcagccacaaataccgcagcctgaacgacctggagaaggat
gtgatgctgctctgccagaacgctcagacctttaacctggagggctcgttgatctacgag
gactccatcgttctccagtcagtcttcaccagtgtgaggcagaagattgagaaggaggac
gaaagcgagggcgaggagagcgaagaggaggaggaggatgtcgatgaaggctccgagtct
gaatcgcgatcggtgaaggtgaagatcaaactgagccggaaggagaagggggacagggga
ggaaaaggccagaagcggaggggccgcggctcccgggccaaaccggtggtcagcgacgat
gacagcgaggaggagcaggaggaggaacgctcggccagcggcagcgacgacgattga
DBGET
integrated database retrieval system
