Oryzias melastigma (Indian medaka): 112146173
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Entry
112146173 CDS
T07439
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
oml01001
]
112146173 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oml04054
]
112146173 (ciita)
Enzymes [BR:
oml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
112146173 (ciita)
Protein kinases [BR:
oml01001
]
Serine/threonine kinases: Other
TAF1 family
112146173 (ciita)
Pattern recognition receptors [BR:
oml04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
112146173 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
AAA_16
nSTAND3
nSTAND_NTPase5
AAA_22
NPHP3_N
LRR_14
NB-ARC
AAA
TsaE
AAA_19
VapE-like_dom
Motif
Other DBs
NCBI-GeneID:
112146173
NCBI-ProteinID:
XP_024127624
LinkDB
All DBs
Position
LG8:16655874..16684763
Genome browser
AA seq
1577 aa
AA seq
DB search
MTMARFAEVLDTVRSFLTWAPPADVHALLDGLVTEQVISEGYRHNLKLWRLDKPGDQETN
DALGRSGKWLRSSVGHLSLSEDLETSLGSTMLLHNCNPKLMQELMEEKDTLLSFLPTYQH
NLRFSDETQELLIGEEYMQKLGNDSERLETGNSENGEEWLEEAARRIAVPLWQNWHKGRD
MLLSLVPCTAACATGDSMVSDRAGQHSFLDMEEETEWEAAKFNCTSLGFIDPCLSDTLDL
HFGDFYSSAADSSAGLNIDTCELEEEAGTDSPVEACRAAETNDITDNPWVLSLADRTTEG
IDEQLSLMDAKHRRNYPLLESISGDLLHLLTDFENTTKENSYSDPINKESLSCCWNESNA
PPPCRTDRAPPESVKSYHEAKMQEGDQDTFIHSDILPDDLSEFLDDNFLVSLLDPNALDN
VFSSINMDDISPQTETPSSLDLIEPKKPPGNSKKRKRQRREERTCTNKKHTTKKARATGQ
PQPKEPHTETPFLLSSDAESGQNPGSGRTDLLDTPPKILRFYPPPAAAPIPIQFIAIPEN
SGYQLVQLPPPNSSVIRLPLPNTPTTPTYILVHADSPPCNRQIPPLSPVGGAVAPILMSS
SPPGSLSDTASKAVSSSCVSLRSPSCDQPPVKEPPQSPSILDICQRVKDYIQAAKSHMYQ
LCLEMEEGLSIMSHYVDPHVTQREIYRLGKSTNKCSDKEFSITGRTHRLKNSLQLNQIFE
SSNEGKSRRCILLLGNAGMGKTTLIKKLCLDWSRDSFPQFDFVFLLDGKGLTLTEPVHSL
QTLLLDLSSIAPCCVDPDEVYAQVLAAPKRVLLIFDGFDELRDYESLLQTQEKDCVTLLQ
KDSKMQTFTVRQLYSAILQRLLLPGCTLLLSSRPRGAGSQLLRRVDALLEVCGFTSDSIE
TYLTHYFTDPDLRASAFECLKSSSYLHHLCWNPALCRLACMVLEQGRSSEDLPRTLTELC
HQVVCLKMEKHARGSTVCGSAQTQTSADSTQDSPTELSKNSQERMLRRKSPIKTRGRVNK
SKKAKELGKQEDDKNRHNLSKNGDESDSKDLLLQLCALAWEGVKANSSSIPRDRTIPTKV
KVFGMGMGILHPQNLRRRLSNEDNRNLEKKRVEGQSEKKGKDINSADCKDLILVWTCAFL
QSYLAAVHLSFSRNVLDRSFLQALPFQTGAKCRRRPKKEELELTQRIVVGLLYHKKEKLQ
HLHSQTETVFRNTLTSRQGLAAKHLAGLSYSNLVPAQVLELCNYVYEASVSQESSKKGAG
GTKLATQLAENLPESLRFNGVPFSPPDVFAMKDALRRGGAEGRNFCLDLENTGIQISGLR
ALMSLNNINSFRACIADVISLWEQLEQSGEEELLQGAVSKFHIHPLKATQVCHIAHLEKL
VNIHMNKRLSESSQLSHSILADGVPAVKDLHKLEFELGSEEGPLALPKLWDLLPGLHNLQ
HLDLEESKIEDEGADKLAMVLDSLTSLEVLNLSQNCIGDHGVKKLALALKDLPKLHCLSL
YSNEISDEGAESLAAVLPQMPSLTQLDVGYNKLQGVGAQSLALSLRDCKKVKTLRMWNQC
IPYGVFERLQRQDSRIL
NT seq
4734 nt
NT seq
+upstream
nt +downstream
nt
atgactatggctcggtttgccgaagttctggatacagtccggtcgtttctgacctgggca
ccacctgcggatgtccacgctctgctggacggtttggtgacagagcaggtcatctcggag
gggtacaggcacaacctgaagctgtggcgacttgataaaccaggagaccaggagacgaac
gacgcgctgggccggagcggaaaatggttgagatcttctgttggtcacctttcgttgtct
gaagatttggagaccagtttagggtccacgatgctcctgcacaactgcaatcccaaactg
atgcaggaactgatggaggagaaggacacacttctaagcttcttgcccacctaccaacac
aatctcagattcagtgatgaaacacaagaactgctgattggtgaagaatacatgcagaag
cttggaaatgatagtgaaagactcgagacagggaattcggagaatggtgaggagtggtta
gaagaagctgcaaggaggatagctgtacctctgtggcagaactggcacaaaggaagggat
atgttgctgtctttggttccctgtacggctgcttgtgcaacaggtgacagcatggtgtcc
gaccgagcgggacaacactcgttcctggacatggaggaggaaacagagtgggaagctgcc
aaatttaactgtacctcgttgggattcatagatccatgcttgagcgacacacttgatctg
cactttggagacttttactcgtctgcagctgacagttcagcagggctgaacatcgatacc
tgcgagctggaggaagaagcaggaactgactcacctgttgaagcctgtcgagcggctgaa
acaaatgatatcactgacaacccttgggtcttgagtttggctgacaggacaacagaaggg
atcgatgagcagctcagtttgatggatgcaaaacatagaagaaactatccactcctggaa
agcatcagtggagatttgcttcacttactgacggactttgaaaacaccaccaaagaaaac
tcgtactcagatcccatcaacaaagagagccttagttgttgctggaatgaatccaatgca
ccaccaccatgccgcactgacagagcaccccctgagagcgtaaagtcataccacgaggcc
aagatgcaggaaggagatcaggatacgtttatccattcagacattcttcctgatgatttg
tctgaattcctggatgacaactttttggtgtccctcctggatccaaatgcacttgataat
gttttcagctcaatcaacatggatgacatcagtccgcaaacagagacccccagctcgtta
gacctcatcgagccgaagaaaccgccaggaaattcaaaaaagagaaaaagacagagacgt
gaagaaagaacttgcaccaataagaaacacactacaaaaaaagccagagcaacaggtcaa
ccacaacccaaagagccacacacagagacgccgttcctcctgagcagtgatgcagaatct
gggcagaatccgggaagcggcaggacagacctcctcgacactccgccaaaaatccttcgc
ttttacccgccgccggctgccgctccaattcccattcagttcatcgctattcctgagaac
tcagggtatcaactggtccagctgcctccacccaactcttctgtcatcagacttccactg
ccaaacactcccactacaccaacgtacattctagttcatgctgactcgcctccctgcaat
cgccaaataccccctttgtctcctgtgggtggcgctgtagccccgattctgatgagttca
tccccaccgggttctctatcagacacagccagcaaggctgtttcctcctcctgtgtgtcc
cttcgttctcctagttgtgatcagcccccagtgaaggaaccacctcaatctcccagcatt
ctggacatttgccagagagtaaaggactacattcaggcagccaaatcccacatgtaccaa
ctgtgcctggaaatggaggaaggcctgagcattatgtctcattacgtagacccacatgtt
acccaaagagagatttatcgcttaggaaaaagcaccaacaaatgttcagacaaggagttt
tccatcactggacgtacacacagactgaaaaactccctgcagctgaatcagatctttgaa
agctctaacgaagggaaatctagacgttgcattttgctgctcggaaacgcaggaatggga
aagaccactttgatcaagaagttgtgtcttgactggtccagggactcttttcctcagttt
gactttgttttcctacttgatgggaaaggactcacgttaacggagccggtgcacagtctt
cagaccctacttttggatctttcttccattgctccttgttgtgttgatccagatgaagta
tacgctcaagttctcgcagccccgaaacgcgtcctcctcattttcgatggctttgatgag
ctacgggactatgagagcctactccaaactcaggagaaagactgtgtgactctactgcag
aaagacagcaagatgcagaccttcacagttaggcaactgtactccgccattcttcagagg
ctccttctcccaggatgcactctgctcctctccagccggccgagaggcgctggcagtcag
ctactccgacgggtagatgcccttctggaggtgtgtggcttcacctcagacagtatcgag
acttacctgactcattatttcaccgatcctgacttgagggcgtctgcttttgagtgctta
aaaagtagcagctacctgcaccatctgtgctggaaccctgcgctctgccggttagcgtgc
atggttttagagcagggcagaagctccgaggacctgccaagaactttgactgaactatgt
catcaagttgtctgtctgaaaatggaaaaacatgcaaggggctcaactgtatgtggtagc
gctcagacacagacttctgcagactctacgcaagatagtccaacagaactttcaaagaat
tctcaagaaaggatgttgaggagaaagtccccaattaaaaccagaggaagggtgaacaaa
tccaagaaagctaaagagttgggaaaacaggaagacgataagaatagacataatctgtct
aagaatggagatgaaagtgatagtaaggacttgctgcttcagctgtgtgctttggcgtgg
gaaggggttaaagccaactcctcctcaatccccagggatcgaaccattccaacgaaagtc
aaggttttcggcatgggcatgggcattctccatcctcagaacctaaggaggaggctctca
aatgaagacaatagaaatttggagaagaaaagagtggaaggacagagcgagaaaaaagga
aaagatatcaacagtgctgattgtaaggatctcattctggtctggacctgcgcttttctg
cagagttatttggcggctgtccatttgtctttttcaaggaatgtcttagaccgctccttt
ctccaggccctccctttccaaacgggtgcgaaatgccggcggcggcccaaaaaagaggag
ctggagctcactcagagaattgtggttgggctgctgtaccacaaaaaggaaaagctccag
cacctccattcacaaacagagactgtcttcagaaatacgctgaccagcagacagggtttg
gccgcaaaacacctggcaggtctttcctactccaacctggttcctgctcaggtcctggag
ctctgcaactatgtttatgaagcaagcgtttctcaagaaagcagtaagaaaggtgccgga
ggcacaaagctggccactcagctggctgaaaaccttccagaatcactcaggtttaacggg
gttcctttcagtccacctgatgtgtttgccatgaaagacgctctgcggagaggaggggcc
gaaggcagaaacttctgcttggatttggaaaacactgggatacagatcagtggactcaga
gctctgatgagcctcaacaacatcaactcattcagggcgtgcatcgctgatgtcatcagc
ctctgggagcagctggaacaaagtggcgaggaggagctcctgcagggagcagtgtcaaag
ttccacatccaccctctgaaggccacacaggtgtgtcacatagcgcacctggagaaactg
gtgaacatccacatgaacaagaggctttcggaaagctctcagttgtcccactccatcctg
gcagacggggtcccggccgtcaaagacttacacaagctggagtttgagcttggttcagag
gagggtcctctggctcttcctaagctatgggaccttctgccagggctgcacaacctgcaa
cacttggaccttgaagaaagtaaaattgaggacgaaggagcagataaactggctatggta
ttagactccctcacctctctggaagtattaaatttgtcacagaactgcataggagaccac
ggggtgaaaaaactggctcttgcactgaaggatctacccaaactgcactgtttaagtctc
tacagtaatgagatttccgacgaaggggcagagagtttggcggccgtcctcccacagatg
ccgtccctcacacaactggatgtgggctacaacaagctacagggtgtcggagcgcagagc
ctcgcgctcagtctgagagactgtaaaaaagttaaaaccctgaggatgtggaaccagtgt
atcccatatggagtctttgaaagacttcaacgccaggacagtcgcatcctttag
DBGET
integrated database retrieval system
