Oryzias melastigma (Indian medaka): 112146442
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Entry
112146442 CDS
T07439
Symbol
mgrn1b
Name
(RefSeq) E3 ubiquitin-protein ligase MGRN1b isoform X1
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04120
Ubiquitin mediated proteolysis
oml04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112146442 (mgrn1b)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
112146442 (mgrn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112146442 (mgrn1b)
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112146442 (mgrn1b)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112146442 (mgrn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
112146442
NCBI-ProteinID:
XP_024128038
Ensembl:
ENSOMEG00000023977
LinkDB
All DBs
Position
LG8:8692454..8699168
Genome browser
AA seq
549 aa
AA seq
DB search
MGSILSRRIAGVEDIDIQANSAYRFPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDSDTLVEDGGKPKVQYGV
EFTFDADARVAITLFCQAFEEFSNGMPVYTPKDPSLVSETVHYKRGVNQQFSMPSFKIDF
SEWKEEDLNFDLDRGVFPMVIQAVVDEGDDCLGHAHVLLAAFERHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCNSC
ADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQTMDHDEHSSSDSVPP
GFEPISLLEALNGLRSVSPAIPSAPLYDEINFSEGLGGDSRPLSSPEHLSDGSLQKGKVS
KSPDSTLRSPSSPIQEEDEEKLSEMSDAQPHTLLSSSPAPTDATATEDAAESLSPDDEDR
MHSGGDILQDCSSERCVLTKAESDPAGDLSLPGSSESTESLKSQSTNCSSQPLLCPTMSL
HMEDEHLNP
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggggtctattctgagtcgcaggatcgctggtgttgaagacatcgatattcaagctaat
tcagcctatcggtttcctccgaaatctgggaattactttgcaagtcacttcttcatggga
ggggagaagtttgacacaccacatccagagggatacctctttggggaaaacatggacctg
aattttcttggaaataggccagtgcagtttccatatgtgacgcccgctccccatgaacca
gtgaaaaccctgaggagtttggtgaatattcggaaggactctctgcgtttagtcagatac
aaagatgactctgacactttggtggaagacgggggaaaaccaaaggttcaatacggagtg
gagttcacctttgatgctgacgctcgggtcgccatcaccctcttctgtcaggcctttgag
gagttctccaatggcatgcctgtgtacactccaaaagatccatccctggtttctgaaacg
gtgcattacaagcggggcgtgaaccagcagttctccatgccatctttcaaaatagatttc
agcgagtggaaagaggaagatctgaactttgacctggacagaggagtgtttcccatggtt
atccaggcggtggttgatgaaggagacgattgtctgggacacgctcacgtacttttggca
gcctttgaaaggcatgttgatggaagtttttctgtcaagccactgaagcagaagcagatt
gtggaccgtgtgagctacctcttgcaggaaatctatgggattgagaacaagaacaaccaa
gaaaccaagccatctgatgatgagaacagtgacaacagcaacgagtgtgttgtatgtttg
tcggacttgcgagacacactcatccttccctgcagacacctgtgtctgtgcaactcctgt
gcagacactctgcgttaccaggccaacaactgtcccatctgcaggctgccttttagggcc
ttgctgcagatcagagctgtgaggaaaaagcctggagctctttctccggtgtctttcagt
cctgttctggctcaaactatggaccatgacgagcactcgagctcagactctgttcctcct
ggttttgaacccatctctctattggaggctctgaacggtctgcggtccgtgtctcctgcc
atcccttctgctccgctgtacgacgaaatcaacttctccgaagggctgggaggagatagt
cgaccgcttagctccccagaacatttgagtgacggaagtttgcagaaaggcaaagtcagc
aagtcacctgacagcacccttcgatcaccttcttctcccatccaggaggaggatgaggag
aagctgtcggagatgtcggacgctcagccgcacacccttctctccagcagccccgccccc
acagacgccacggcaacggaggacgcggcggagtcgctttctccagacgacgaggacagg
atgcattctgggggagacatcctgcaggactgcagcagcgagcgctgcgtcttgaccaaa
gcagagagcgacccggcgggcgatctgtctcttcctgggtcgtcagagtcgacagaaagc
ctgaaaagtcagagcacaaactgctccagccagcctcttctgtgtcccaccatgagcctt
catatggaagacgaacacctgaacccctaa
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