Oryzias melastigma (Indian medaka): 112146481
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Entry
112146481 CDS
T07439
Name
(RefSeq) retinoic acid-induced protein 1 isoform X1
KO
K19749
retinoic acid-induced protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112146481
Transcription factors [BR:
oml03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
112146481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
112146481
NCBI-ProteinID:
XP_024128091
Ensembl:
ENSOMEG00000012998
UniProt:
A0A3B3DHL1
LinkDB
All DBs
Position
LG8:complement(12885700..12936980)
Genome browser
AA seq
2214 aa
AA seq
DB search
MQSFREHSSGYHSNQPCYQQEPHELSRLETYRQHPHHPHPQHPHPGPGPHPGPGPGQTRP
GYEAHSLANTASMPPAGGGGMGGGSKDCYSQQTYAGYPGTPGGAGGGNGGAAASQTKKSF
RGNKVPPTNPGQHLQGSGGYNNHMGSASYSAQYLSEGHPQQKWEDPAQLAQYEQEMVGRL
EAGSTPTPVSSQYMDLNIMGHSQTQCHQPSTSIYTSPHSQPHPPNLAPSPLMYPQSHLHY
PQHSPSPSPYMEKCNPMPHCYKGYNVPPNSQYVRQMSSHSNLKQGNYRSTQNNYSYQQAL
PRVYEQQPSLQSLSNTSEPHPKYQQYNQPQQNYCLSDLPVRSPEQYYQTCSPSSNHSPAR
SVGRSPSYSSTPSPLMTNPDSFQYSQPPMTPGAASTSSSSSAGMQEQANTNNMLLPPRSH
PSPNVSLAAPHSFTSTPQLPTMKERFSEKLLSNPSLWSLNALTSQVENISNNVQQLLLSE
ALVANKKGSKRSSGGSTSSAGSGVSSKKGEEYKSPSYTDSSGSMGGGPMQDRYSTPQHQS
MPLEVHEGGYSSSSEEPLDRGYYYFGQSRSPAQAHNNTQISLDTTSSCSMASPDDMSTRS
GDSGLHNLTPDPTRCQPGQVGDGMSTPAKSISDERSPTSIMIPSPMKQERDSPTNVQSII
ESVKENFEESAWMDKSVEKEEETIEKKHDWERLSDSTKSTEKPEKWSDEEKCQAAYSKIN
TGMTEKHYCYENEVYQEVQGKYDPDAADSVEESPADLSDSSNKDPFGQEIKSEAFKSESP
TASESSVKTFPFISRGDLEQDQYSIEKDDSSENASLTPQAEVLEDCDLDKRDSRDQENEE
RDEEEGTGKEKAVEDEQDMQKKRESSASPHLSEEVRVDLGEGKKLSQSSTEEHMNNRNSQ
ENPSGDLFSRTESLSSEFNTDDEFAGAFVRANLASANAAIDPSARESAIGDTVPQSQSAM
PVFSALTEKAAPPAQGRDHIDHSDAKVLEPDSPQLPGKSILPSAPSWANTPPSPKKGDED
LESGISCTSAMTPLAKPEPVAPSSQPRSFGRKHARGRRRITHSGVGIRQQLSLEREEEKD
EERATSPSQNLDMTPSKTELYSDHTDLAHQDSIVSRTSRMVTDGFRSRMCTRSFNATDVQ
SKTELSLKRKPGPKPGSKPGPKSGVKPGVKPGPKPGLKSISKPGPKPGPKPGQKPLHNET
EIPVKTDSNVKRKPGPKPGSRLRSKPISIPVPKPGPKPEPKLTPKPGLKLEDALTPTDTP
SIKGVVGRPKGSIAKVKLVQQEVTIEPCTGQQSRGRKSLKTSIPQLNQETKPTQADSQAQ
PEAKAVENESKNMVLRSRKPSKDKLENEKKKITQGDTHTLLEIKVRDASPVREEIVDVEL
TPTPVSDIVKTPEASDTPAPPSPLDALLQSEKKPSPQLKRKSPDNFTTPIKKKRGPKPKP
KPSPPQPETQEQVDPIPTEKSVRGPRRKRGPPKKASTLTPMTKDPPLNIAVPDAVGDVAV
NPHQCPTKTKVLPPRKGRGQKYEAMVQKITSPSSKKHMPTPHPDGNLMDDAANKVSSDHV
LKESEIPVQINNTEMLEPGKEGSKQQEASVSKEEMTQEGKNQERSEEGLTAEGLRHKQKD
EVSNKTEKKQVPFKVDTQRDLADCNDLGSTDTHLDVGGLGELTHQASESVITAAIKSTRA
KRKRWAMVESADVSVVALEAGSLIVTTPRLAKQRAIKNNHEMHLKQRRKKRKDQETSEKS
DTVGETNTEVIKQEESADEKVTPMETTTSLPVSQDEILEDPQFIKTEIVEKPRRGRKPSA
NSTKRKRSKTPIKQLPAKPLKVHKKPGPKPGMKDAIEVIEAVVRAAGCEQAKKEEREIEE
RARLEKENPDQQETSIVGPVVTVMEKLTEVISVKRIRRRPIYQNSKLSFCPYVRINNSRD
FSSWCAIVNKPEDAVVFQRRRKKGIIRMRNPFTVAKVTPHTAAMIQGPMVNTDLTGRSLS
CCLCGKPANYKDLGDLCGPYYAESSVPRKVLTITHTESFKEESNTTCANDCSTTEEPGTS
KNNAEVNVDKEGNTEASSQEPSSRKHHHWRYRRAERPERSCREGGPRRLTLRERFRKMKH
LQTLRKEASEDQERTNSIFQRLQMEAEASEHWAHENCAIWTKGVIMVAGRLYGLKEAANS
SAQTNCYKCQTEGASLSCCWRGCSHKYHYVCAKEIGCTFHEDDFSIKCPKHEDL
NT seq
6645 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcctttcgtgagcacagcagcggttaccacagtaaccagccttgctaccagcag
gagccccatgaattatcccgcctggagacctaccggcaacaccctcatcatccccaccct
cagcatccacacccaggccctggaccacatccaggcccaggcccagggcagaccagacca
ggctatgaagcccactccttggcaaacactgctagcatgcctccggctggaggaggtgga
atgggaggaggatccaaagactgttacagccagcaaacctatgctggatacccagggact
cctggaggggctggcggtggaaatgggggcgcagcagcctcgcagacaaagaagtccttc
agaggaaacaaagtgcccccaacaaaccctggtcagcatctgcagggttctggcgggtac
aataaccacatgggctcagctagttactcagcccagtatttaagtgaggggcatccccaa
caaaagtgggaggacccagcccaacttgcacagtatgaacaggagatggtggggcgttta
gaggctggcagtacccctacgcctgtctcctctcagtacatggacctgaacattatgggg
cattctcaaacccagtgccatcagccctctacctctatttataccagtccccacagtcag
cctcaccctcctaaccttgccccctcgccccttatgtatccccagagccacctgcactac
ccacagcattctccttctccatctccatacatggaaaagtgcaatcctatgcctcactgc
tataaaggttacaacgtacctccaaattcccagtatgtaagacaaatgagcagccacagc
aatctgaagcaaggaaactacaggtcgactcagaataattacagttatcagcaggccctc
cccagagtttatgaacagcagccttctttacagtccttgagtaacacctcagagccccac
ccgaaataccaacagtacaaccagccccaacaaaactactgtctgtcagatctgccagtc
agatctccagagcagtattatcagacttgtagcccctcctccaatcactcccctgcacgt
tctgtcgggcgttcaccgtcatacagttccaccccttcaccactaatgaccaatccagac
tcgtttcagtacagccagccgcccatgacacctggggcagcctcaacttcctcgtcctcc
tcagctggcatgcaggagcaggctaatacaaacaacatgctgctgcctccacggtcccac
ccatccccaaacgtctcactcgcagccccccacagctttacctcaacaccacaacttccc
accatgaaagaacgcttctcagagaaactgttatctaaccccagcttgtggagcctgaat
gccctcacctcccaggtggagaacatctctaataatgtccagcagctgctgctttctgaa
gcattggttgcaaacaaaaaaggcagtaaacgcagcagtggtgggagtaccagcagcgca
ggaagtggagtgtcttctaaaaagggtgaagagtacaaaagtccttcttatacagatagc
agtggtagtatgggcgggggacccatgcaggaccgctactccacccctcaacaccagtca
atgcccttggaagtccatgagggtggttactccagcagtagtgaagaacctctggataga
ggctactattactttggccagagcagaagtccagctcaggcccacaacaacacccaaatt
agtcttgacacaacttcgtcttgctcgatggcgtctccagatgacatgtcgaccaggtct
ggtgactcaggtctccacaacctaactcctgaccccaccaggtgtcagccaggccaggta
ggtgatggcatgagcactcctgcaaaaagcatcagtgatgagcgatctcctacaagcatt
atgattcccagcccaatgaaacaagaaagagattccccaacaaatgtgcaaagcatcatt
gagtctgtcaaagagaattttgaagagtctgcatggatggataaatccgttgaaaaagag
gaggagacaatagagaaaaaacatgactgggagagactttcagattcaaccaagtcaacg
gagaagccagagaagtggtcagatgaagaaaaatgccaagcagcctacagcaaaataaat
acaggtatgacagaaaaacattattgttatgagaatgaagtgtaccaggaggtccaggga
aaatatgaccctgatgcagcagattctgttgaagagtctccagcagatctctctgactcg
agcaacaaagatccatttggtcaggagattaagtcagaggcattcaaatcagaatctcca
acagcttctgaaagctcagtgaaaacatttccttttatttcaaggggtgaccttgagcag
gatcaatattccattgaaaaggatgatagctcagagaacgcaagcctgacaccccaagct
gaagtcttggaagactgtgacttggataaaagagacagcagagatcaagagaatgaagaa
agagacgaggaagagggtacgggaaaggagaaggccgttgaagatgagcaagacatgcag
aaaaaacgagaaagctcagcttcccctcatttgtctgaagaggtgagagtagacctaggg
gaggggaagaaactgagccagtcatcgactgaagagcacatgaataatagaaatagccaa
gagaatccttctggagatcttttcagtagaacagagagtctgagctctgagttcaataca
gacgatgaatttgcaggggcatttgtcagggcaaatttagcatcagccaatgcagcaata
gatccttctgcgagagagtcagccattggtgacactgtccctcagtctcaatctgccatg
ccagttttctctgctctcaccgaaaaggcagcacctccggcgcaaggaagggatcatatt
gatcacagtgatgctaaagtgctggagccagactctcctcagctgccggggaagtcaata
ctcccgtcagctccttcctgggcaaacacgccaccttcccccaaaaaaggtgatgaagat
ttagaatcaggcatcagctgcaccagtgccatgactccattggctaagccagagcctgta
gctccatcttcccaaccaagatcctttggacgtaagcacgccagaggcagacggagaata
actcattcaggtgtggggatacgtcaacagttaagtttggagagggaagaggaaaaggat
gaggaaagagccacgtctccctcacaaaatttagacatgactcccagcaagactgagcta
tactcagatcacactgacctcgcacatcaggactcgattgtaagtcggacttccagaatg
gtgactgatgggtttcgctcgagaatgtgcacccgctcattcaatgcaacagatgtgcaa
tccaaaactgaacttagcttaaagaggaagccaggaccaaaaccgggttcaaaacctgga
ccaaagtcaggagtaaaaccaggggtgaagccagggcctaagcctggactaaaatccatt
tcaaaacctggaccaaaacctggaccaaagccaggacaaaaacctttacataatgaaaca
gaaataccagtgaagactgactctaatgttaaacgtaaaccaggacccaaaccaggttca
aggctcagatcgaagcctatatcaatacctgtcccaaaaccaggcccaaaacctgaacct
aaactgactcctaagcctggactcaagcttgaagatgctttgaccccaacagatactccc
tcaattaaaggtgtagtaggccgacccaagggctccatagctaaagtaaaactggtgcaa
caggaagtcaccattgaaccttgcacaggacagcaaagcagaggtagaaaaagccttaaa
acctcaataccccaattaaaccaggaaactaaaccaacacaagcagacagtcaagcacaa
cctgaggcaaaggcagtagaaaacgagagtaagaacatggtgttgagatctagaaaaccc
tcaaaggacaaactggaaaatgaaaaaaagaaaatcacacaaggagacacccacacacta
ctggaaattaaagtcagggatgcttctccagtaagagaggaaattgttgatgtagagctg
actccaacaccggtttctgatatcgttaaaacaccagaggcttctgacacacctgcacca
ccttcaccattagacgccctcctgcaatctgaaaaaaagccctccccacaactaaaacgc
aaatccccagataattttacaacacccatcaagaaaaagaggggtccaaagcccaaacca
aaaccctcaccacctcaacctgaaacacaggaacaggttgacccaataccgacagaaaaa
agtgtgcgaggccccagaagaaagcgcggcccaccaaaaaaggcctccacattgaccccc
atgaccaaagatccccctttaaacattgccgtccctgatgctgtgggtgatgtggcggta
aatcctcatcagtgccctaccaaaactaaagttctcccaccacggaaaggcaggggtcaa
aaatatgaggccatggtacagaaaattacttctccaagttctaagaaacacatgccaaca
cctcacccagacggcaatctaatggatgatgctgcaaacaaggtttcttctgaccatgtt
ctaaaagaaagtgagatccctgttcagatcaataatacagagatgttagaacctgggaaa
gaggggtcaaagcagcaggaagcatcagtcagtaaagaggagatgacacaagaaggaaaa
aatcaggaaaggagtgaggaggggttaacagcagaagggttgagacacaagcaaaaagat
gaggtatccaataagaccgagaagaaacaggtaccctttaaagtagacacacagcgggat
cttgcagactgtaatgacttgggttcaacagacacccatttagatgtagggggtttaggt
gagttgacacaccaggcatcagaaagtgtaatcactgctgccatcaaatccactagagct
aaaaggaagagatgggcaatggtagagagtgcagatgtttcagtagtagccttagaagcg
ggaagcctaatagtcacaaccccaaggttagcaaagcagagggccattaaaaacaaccac
gaaatgcaccttaaacagagaaggaagaagagaaaagaccaggaaacctcagagaaaagt
gatacagttggagagaccaacactgaagtgataaaacaagaggaatcagcagatgagaaa
gtgacccctatggaaaccacgacatcgctgccagttagccaggatgagattctagaagac
ccccagtttatcaaaacagaaatagtcgagaaacctcgaagaggtcgaaaaccatcagca
aactcgactaaaaggaaaagaagcaaaaccccaataaaacagttacctgccaagccgttg
aaagttcacaaaaagccagggccaaaacctggcatgaaggatgctattgaggtaattgag
gctgttgttagggctgctggttgtgaacaggccaaaaaagaggaaagagaaatagaggag
agggcaagattggaaaaggagaatccagaccagcaagagacaagcattgtgggtcctgtg
gtgactgtaatggagaaactgacggaggtcatttctgtgaaaagaatcaggcgcagaccg
atctatcaaaattctaagctgtctttttgtccctacgtacgaatcaacaactccagggac
ttttcatcctggtgtgccatagtcaacaagccggaggacgcagtggtatttcagagacgg
agaaagaagggtatcatcagaatgaggaatcctttcactgtggcaaaggtgaccccacac
acagctgccatgattcagggacctatggtcaatacagatctgactggtaggagtctttca
tgttgtctttgtggaaagccagcaaattacaaagacctcggggatttgtgtggaccatac
tacgcagaatctagtgttccgcgtaaagttttgaccatcacacacacagaatccttcaaa
gaagagtcaaacacaacttgtgccaacgactgtagcactactgaagaaccaggcacttcg
aagaacaacgctgaggtcaacgtggacaaagaaggaaacacagaagcatcatctcaagag
cccagcagcaggaagcatcatcactggcgctatcggcgagcagaaagacctgaaagatca
tgtcgggaaggtggtccacgaagattaacactcagagagaggttcaggaaaatgaagcat
cttcagaccctccgcaaagaggcttcagaggaccaggagagaaccaacagcattttccaa
cggctacaaatggaagcagaggccagtgagcactgggcgcatgaaaactgtgccatttgg
accaagggggtaattatggtggctgggagactgtatggactgaaggaggctgccaacagc
tcagcacaaacgaactgctacaagtgccagactgagggggcttccctcagctgctgttgg
agaggctgctctcataaataccactatgtctgcgccaaagagataggctgtacattccac
gaagatgatttctccatcaaatgtccaaaacatgaggacctgtaa
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