Oryzias melastigma (Indian medaka): 112146613
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Entry
112146613 CDS
T07439
Symbol
colgalt1a
Name
(RefSeq) procollagen galactosyltransferase 1
KO
K11703
collagen beta-1,O-galactosyltransferase [EC:
2.4.1.50
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml00310
Lysine degradation
oml00514
Other types of O-glycan biosynthesis
oml01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
112146613 (colgalt1a)
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
112146613 (colgalt1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
oml01003
]
112146613 (colgalt1a)
Enzymes [BR:
oml01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
112146613 (colgalt1a)
Glycosyltransferases [BR:
oml01003
]
O-Glycan biosynthesis
O-linked Gal type
112146613 (colgalt1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_25
Glyco_tranf_2_4
Anp1
Motif
Other DBs
NCBI-GeneID:
112146613
NCBI-ProteinID:
XP_024128282
Ensembl:
ENSOMEG00000005879
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All DBs
Position
LG8:complement(9536636..9546180)
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AA seq
610 aa
AA seq
DB search
MRWPAGLPAASLLLLLCCYRAARGYFAEERWSPESPLLAPRVHVALICRNSEHSLPHFLG
TIERLNYPKDRMALWVATDHNEDNTTAVLRDWLVKVQNLYHYVEWRPQEEPRFYDDEEGP
KHWTDLRYEHVMKLRQAALESAREMWADYFMLVDCDNLLTNPDVIWKLIKENKTIIAPML
ESRAAYSNFWCGMTSEGYYRRTPAYIPIRRQVRKGCFAVPMVHSTFLIDLRKEASKQLAF
FPPHPDYSWAFDDIIVFAYSARMADVQMFVCNRESYGYFPVPLRSHNTLQDEADSFLHAL
LEVNVRNSPVMPSKYMPVPRKQLDKMGFDEVFMINLQRRTDRKERMLRALYEQEIACKII
AAVDGKAMNVSEIHAMGIHMLPGYSDPYHGRPLTKGELGCFLSHYNIWKEVVERRLQTSL
VIEDDLRFEVFFKRRLINLMSEIKEEGLDWDLIYIGRKRMQVDHPEKAVPNIHNLVEADY
SYWTLGYMISLQGAKKLLKAEPLKRILPVDEFLPIMYNKHPVSDYMDQFEKRDLKAFSAE
PLLVYPTHYTGDPGYISDTETSTVWDNDKVRTDWDRARSGKTREQAKISTEAQNSDVLQS
PLDSTARDEL
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggcccgccggcctccccgccgcgtcgctcctcctgctgctgtgctgctatcgc
gctgcccgtggatatttcgcggaggagcgctggagccccgagtctccgctgctcgctcct
cgggttcatgttgccttaatttgcagaaactcggagcactccttgccgcacttcctgggt
actattgagcgcctgaactatcccaaagaccgcatggctctctgggtagcaactgatcat
aatgaggacaacactacagccgttctgcgggattggttggtaaaagtgcaaaacctttac
cattatgtggagtggaggccacaggaggagcccagattttatgatgacgaggaaggtccg
aaacactggactgatcttcgctatgagcacgttatgaaacttcggcaagcagcactggag
tcagctcgagaaatgtgggcagattacttcatgctggtggattgtgacaacctccttacc
aatcctgacgtgatctggaagctcatcaaagaaaataagactattattgctccaatgctt
gaatctcgcgcagcttattccaacttctggtgtgggatgacctcagagggttactacagg
cgcacccctgcttacatacccatcaggaggcaggtgcggaagggctgttttgctgttccg
atggttcactcgacatttctgatcgacctcaggaaagaagcatcaaagcagctcgccttt
tttcctccacatccagattatagctgggcctttgatgacatcattgtttttgcgtattct
gctcggatggcagatgttcaaatgtttgtatgtaatagggagagctatggttacttccca
gtaccactgcgttcccataatactttgcaagatgaagctgacagctttttgcatgccctt
ttggaagttaatgtgagaaattccccagtgatgccttctaaatacatgcctgttcctaga
aaacaacttgacaaaatgggctttgacgaggtgtttatgataaacctgcagaggcggaca
gatcgcaaagagcgcatgctgagagccttgtacgagcaggagattgcatgtaaaatcatt
gcagctgtagacggaaaagcaatgaatgtcagtgaaatacatgctatgggtatccatatg
ctccctggatacagtgacccttatcacggtcggccactgacaaagggagagctgggctgt
ttcctctcccattataacatctggaaggaggttgtagagcggcgcctgcaaacatctctg
gtgatagaagatgacctacgctttgaggtcttctttaagcgccgtttgataaacttaatg
agtgagattaaagaggaaggacttgactgggatctaatttacattggtcggaaaagaatg
caagtggatcatccagagaaagccgttccaaacatacacaatctagtggaagcagattat
tcatactggacacttggctatatgatatcattacaaggtgctaagaaacttttaaaagca
gaaccactgaagaggattttgcctgtggatgagtttcttcctatcatgtataataagcat
ccagtctctgattatatggatcagtttgaaaaaagggacctgaaggcattttctgcagag
cctctccttgtgtatccgacacactacacaggtgatccaggctacatcagtgacactgag
acctcaactgtttgggacaacgacaaggtccgcacagactgggacagagcacgctcggga
aaaactcgggagcaggccaagatcagcaccgaggctcaaaattcagatgtgctccagtca
cctttggacagcacagcaagagacgagctttag
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