Oryzias melastigma (Indian medaka): 112146815
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Entry
112146815 CDS
T07439
Symbol
slc9a3r1b
Name
(RefSeq) DNA mismatch repair protein Mlh1 isoform X1
KO
K08734
DNA mismatch repair protein MLH1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03430
Mismatch repair
oml03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112146815 (slc9a3r1b)
03460 Fanconi anemia pathway
112146815 (slc9a3r1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oml03400
]
112146815 (slc9a3r1b)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
112146815 (slc9a3r1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EBP50_C
DNA_mis_repair
PDZ
PDZ_6
HATPase_c_3
HATPase_c
PDZ_2
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
112146815
NCBI-ProteinID:
XP_024128596
Ensembl:
ENSOMEG00000018901
LinkDB
All DBs
Position
LG8:complement(15275022..15301122)
Genome browser
AA seq
714 aa
AA seq
DB search
MAGVIRRLDETVVNRIAAGEVIQRPANAVKEMIENCLDAKSTNIQVTVKDGGLKLLQIQD
NGTGIRKEDMEIVCERFTTSKLQTFEDLSSIATYGFRGEALASISHVAHVTITTKTADAK
CAYRASYRDGKLKDPPKPCAGNQGTQIVVEDLFYNVSTRRKALKSPGDEYSRIVEVVSRY
AIHNSGKSLTVKKQGETVADVRTLPNASVVDNIRSVFGNAVSRELIEVGCEDAKLAFKMN
GYISNANYSVKKYVLVLFINHRLVESSALKKAVETVYAAYLPKKTHPFLYLSLEISPQNV
DVNVHPTKHEVHFLHEDSVIESIQKHIDSKLLGFNSSRTFFTQTLLPGPLKTSTSSAEPS
ERVYAHQMVRTDCRSQKLDAFLQPKEKPPPEPEAASVRQAESSPLQQHRGEMEDLEDAEM
LEEMLEDVQEAPTQKGQEESSAAAQEVLRKRQRKEEEKKKEEVEAEEEVVEQEEAPREST
PVPRSNGDSHVEVEEKLSLSSEKEVCTEPRPRLCVIQRGPNGYGFNLHSERARPGQYIRA
VDEDSPAERAGLQPKDRIVQVNGVSVEGKTHSDVVAAIKAGGRETRLLVVDPDADAFFKK
CKVRPTSEHLTGPLPEPVVNGQPEEKVRQVNGRATKNAERDSKLSISPSPSSASSNTSLT
TPTANTPPEGFIADTIPALNLTLQQVKELAHQKRSNKRAPPMDWTKKNELFSNL
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggtcattcggcggctggacgaaacggtggtgaaccgcatcgctgcgggagaa
gtgatccagcgtcccgctaacgcggtgaaggaaatgattgaaaactgtttagatgcaaag
tccaccaacattcaggtgacagtgaaagacggtggattgaagttgctgcagattcaggac
aatgggactggaatcagaaaagaagacatggagatcgtctgtgaaagattcaccaccagc
aagcttcagacctttgaggacctatcatccattgcaacctatggattccgaggagaggct
ctcgctagtatcagccatgttgctcacgtgaccatcaccaccaagacagctgatgccaag
tgtgcctacagagccagctacagagacggaaaactcaaagacccccccaaaccgtgtgct
gggaaccaggggacccaaattgtggtggaggaccttttctacaatgtgtccaccaggagg
aaagccctgaagagccccggtgacgagtactcccggatcgtggaggtggtcagcaggtac
gccatccacaactctggaaagagtttgacggtgaaaaagcagggggagactgtggccgat
gtgaggacgctgcccaacgcgtctgtggtcgacaacatccgcagtgtttttggaaatgcc
gtcagcagagagctgatcgaagtcggctgtgaagatgcgaagctggcttttaagatgaac
ggctacatctcaaacgcaaactactctgtgaagaaatacgtcctcgtcctgttcatcaac
catcgtctggtggagtccagtgctctgaaaaaagctgtggagacggtttatgctgcgtac
cttccaaagaagacacatcctttcctgtacctcagtttggaaatctcacctcagaacgta
gatgtgaacgttcaccccacaaagcacgaggtgcatttcctgcacgaggacagcgtcatt
gagagcattcagaagcacatcgacagcaaacttctgggcttcaactcctcccggaccttc
ttcactcagacgttgctgccgggtccactgaagacctccacctcctcggctgaaccttct
gagcgagtctacgctcaccagatggtgagaaccgactgtcgctcacagaaactggacgcc
ttccttcagccgaaggagaagcccccgccggagcctgaggctgccagtgtcaggcaggcg
gagagcagccccctccagcagcacaggggggagatggaggacttagaagatgcagagatg
ctggaggagatgctggaggatgtgcaggaagctccaactcagaaaggccaggaggagtcc
agcgctgcagctcaggaagttctgaggaaacgacagagaaaagaggaggagaagaagaag
gaggaggtggaggctgaggaggaggtggtggaacaagaggaggcacccagggagtccacg
ccggtaccgaggagcaacggagacagtcacgtggaggtggaggagaagctgagcctcagc
tcagagaaggaggtgtgcaccgaaccgcggccgcgtctctgcgtgatccagcggggcccc
aacggatacggcttcaacctgcacagcgagcgggcgcggccgggccagtacatcagagcc
gtggatgaagactcccccgctgagagggccggcctccagccgaaggaccggatagtgcag
gtgaacggcgtgtccgtggaggggaagacgcattcagacgtggttgctgccatcaaagcg
ggcgggcgcgagacccggctgctggtggtggatcctgacgcagacgccttcttcaagaag
tgcaaagtgaggcccacctcggagcacctaaccggtccgctgcctgagcccgtggttaac
ggacaaccggaggagaaggtgagacaggtgaacggcagagcgaccaaaaacgcagaaaga
gattcaaagctgtcgatcagtccttctccttccagtgcttcgtccaatacgtccctcaca
accccgactgcaaacactcctcctgagggtttcatcgcagacacaatcccagctctcaac
ctcaccctgcagcaggtcaaagagctcgcacaccagaagcgctcgaacaaaagagctccg
cccatggactggaccaagaaaaacgagctcttcagtaacctatag
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