Oryzias melastigma (Indian medaka): 112146868 Help Entry 112146868         CDS       T07439                                  Symbol xab2 Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism oml  Oryzias melastigma (Indian medaka) Pathway oml03040   Spliceosome Brite KEGG Orthology (KO) [BR:oml00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     112146868 (xab2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:oml03019]     112146868 (xab2)    03041 Spliceosome [BR:oml03041]     112146868 (xab2) Messenger RNA biogenesis [BR:oml03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      112146868 (xab2) Spliceosome [BR:oml03041]  Complex B   Other components    Prp19-related factors     112146868 (xab2)  Complex C     112146868 (xab2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_C HAT_PRP39_N TPR_14 Suf TPR_12 TPR_2 TPR_8 TPR_15 TPR_16 ARM_TT21_C ARM_TT21 SNAP NRDE-2 Tcf25 LTN1_E3_ligase_6th TPR_1 Motif Other DBs NCBI-GeneID:  112146868 NCBI-ProteinID:  XP_024128676 Ensembl:  ENSOMEG00000023931 LinkDB All DBs Position LG8:complement(9324904..9332142) Genome browser AA seq 848 aa AA seqDB search MPSVNGKADVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKTTLNMIYERALKELP GSYKLWYNYLRERRKQVKGKCITEPVFEEANNCHERALVFMHKMPRIWLDYCQFLVSQCK ITRSRRTFDRALRALPVTQHPRIWPLYLRFVHNLPLPETSIRVYRRYLKLSPENAEEYIE YLRSVGRLDEAAVRLAAIVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES MIAAKMETNSEMGQDEEDDVDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK LYEGTPRQIINTYTEAAQTVDPMKATGKPHSLWVCFAKFYEENEQLDDARTIFEKATKVN FKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSKKAEYFDSSEPVQNRVYKSLK VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE YGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ DKPKPKEKILFVRSDTSRSELAELSKQANPDEINIDDEDEDDEDQGPEEVQLEQKSIPTA VFGGLKDD NT seq 2547 nt NT seq  +upstreamnt  +downstreamnt atgccatcagtaaacggaaaagctgatgttatctttgaggatgacgacctgccttacgag gaggagatcatcaggaatccgtactcggtcaagtgctggatgcgttacattgagttcaaa cagaatggacccaaaactaccctcaacatgatctatgagcgggctttgaaggaattacct ggaagctacaagttgtggtataattatctaagagagaggcggaaacaggtaaaagggaaa tgtatcactgaaccagtctttgaggaagccaacaattgtcatgagagggctctggtgttt atgcacaagatgcccagaatatggcttgattactgccagttcctcgtgtctcagtgtaag atcacaagaagtcggcgaacttttgaccgtgccctgagagctcttcccgtaactcaacat ccacgaatctggcctttgtatctccgttttgtgcacaatctgcccctgcctgagacgtcc atccgagtatatcgcagataccttaagctgtctccagagaatgcagaagaatacatagag tatttgcgatctgttggtcgcttggatgaagcagctgtacggctcgctgcgattgtcaat gatgagaactttgtgtccaaagagggcaaatccaactatcagctgtggcacgagctctgt gacctgatctcacagaaccctgacaaggtgacctccctcaatgtgggagctatcatccga ggaggtctcactcggttcacagaccagctggggaaactttggtgctctttagctgactat tacatcaggagtggtcactttgagaaagctcgagatgtgtatgaggaagccatcctcaca gtggttactgtaagagattttacacaggtctttgacagctatgcacagtttgaagagagc atgattgctgccaagatggagactaattctgagatggggcaggatgaagaggatgatgta gatctggagcttagactggctcgctttgagcagctcatagctcgtcgaccacttttactc aacagtgtgctcctgaggcagaacccccataatgtccacgagtggcacaagagagtaaaa ctgtacgagggaacccctcgccagattataaacacttacactgaggctgcgcaaactgtg gatccaatgaaagccactggaaagccacactctctctgggtgtgttttgctaagttctat gaggagaatgaacagctggatgatgcaagaacaatttttgagaaggctaccaaagtgaac ttcaagcaggtggatgaccttgctgcagtttggtgtgaatatggcgagatggaacttcgt cacgaaaactatgatcaggcactacgcatactgaggaaagccacagccatcccgtcaaag aaggcagagtactttgattcatctgagccagtccaaaaccgagtctacaagtccctgaag gtttggtctatgctggcagacctggaggaaagtctcggcactttccagtctactaaagca gtctatgatcgcataatagatctccgcatcgcaaccccgcaaatcatcatcaactatgcc atgtttctggaagaacacaattactttgaggaaagctttaaagcatacgagcgaggaatc gctcttttcaaatggccaaacgtttacgacatctggaacacgtacctcaccaagttcatt gaccgttatggtggcaagaagctggaacgagccagagatttatttgaacaagccttggat gggtgccctgccaaatttgccaagaccatctatctgctgtatgctaaactggaggaggaa tatggattggctcgacacgccatggctgtgtatgaaagagcaacacaggctgtggaaact gaggagaggcatcatatgttcaatatctacatcaagcgagcggctgaaatttatggagtt acatacaccagagcaatatatcagaaagcaatcgaggtacttcctgatgagcactccaga gacatgtgtctgcgatttgctgacatggagagtaaacttggtgagatcgatcgagccaga gccatctactcctactgttctcagatctgtgaccccagggtgacagcgaacttctggcag acttggaaggaatttgagatacgccatggaaatgaagacaccattagagagatgttgagg atcaaacgcagtgtccaagctacctacaacacccaggtcaactttatgtcctcacagatg ctgaaagcaactacaagctccacaggcactgtgtcagaccttgctccaggccagatgggc attgatgatatgaagatgctggagcagaaagcccagcagcttgcagcggaggcagagcaa gataaacccaagcctaaggagaagattctctttgtcaggagtgatacatctcgtagtgag ttggctgaactttcaaaacaggcaaatcctgatgagatcaatattgatgatgaggatgaa gatgatgaagaccaaggacctgaagaggtccagctggagcagaagagcatcccaacagct gtctttggagggcttaaagatgactga

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