Oryzias melastigma (Indian medaka): 112146894
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Entry
112146894 CDS
T07439
Name
(RefSeq) ran GTPase-activating protein 1 isoform X1
KO
K14319
Ran GTPase-activating protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112146894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112146894
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
112146894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RanGAP1_C
LRR_6
LRR_8
CDC45
SDA1_dom
PI3K_1B_p101
Myc_N
YL1
Tim54
Cwf_Cwc_15
CPSF100_C
Motif
Other DBs
NCBI-GeneID:
112146894
NCBI-ProteinID:
XP_024128716
Ensembl:
ENSOMEG00000005637
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Position
LG8:complement(18458261..18468150)
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AA seq
577 aa
AA seq
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MATDSVEELVASLAKTGVVDGELSYKGQGRKLDDAKSVDEIVKEIQDFEGLEALRLEGNT
VGVEAAQAIAKALESKNDLKCCYWSDMFTGRMRSEIPPALNSLGDAVMLAGARLTVLDLS
DNAFGPDGVKGIEKLLKSTSCYTLQELRLNNCGMGIGGGKILAASLKLCHQKSSAEGTPL
SLKVFVAGRNRLENDGTAALAQAFQLIGTLEEVHMPQNGINHPGVTALASAMQHNPELRI
LNLNDNTFTEKGAFAMAQALKHLRSIQVINFGDCLVRPAGAKAIAEAVAEGLPALKELNL
SFGEITEEAALAVAHAVRDKEQLQKLDLNGNSLGEDGCKALKDAMEGMDMGNLLGSLSDD
EGEPEDDDDDDDDDDDDDEDEEEEIDEEELEEEEEEEEEEESQANKVSTPVSAPRPPDVS
SFLTFPSPDKLLKLGAKRALLVQQQVDTTDTTKTAEAFLKIASVYKEENNDVKNAVLDTI
DALLSKAFNTTSFQGCSFVSALLVLLGLIKSEDKVKPVLVVPGHLHAIEHAVRQDYFPKE
SVAVLKAFMSRSSKTLESCGNAKNLLQSTLQRIGSQS
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagatagcgttgaagagttggtcgcttcattggccaaaacaggagtggtggat
ggagagctgagttacaaaggtcaggggaggaaactggacgatgccaagtcagtggatgag
attgtgaaggagatccaggactttgagggtttagaagctctgaggctggagggaaacact
gttggcgttgaagctgcacaagccatcgccaaagccctggagagcaagaatgatctgaag
tgctgttattggagtgacatgtttactggccgtatgcgttctgagattccccccgctttg
aattctctgggtgatgctgtgatgctggctggagccaggctgactgttctagacctcagc
gacaacgcatttggcccggatggtgtcaaaggcatcgaaaagctgcttaagagcacttcc
tgctacacattacaggagttacgcctcaacaactgtggcatgggcatcgggggtggcaag
attttagcggcttccttgaagctttgtcatcaaaaatccagtgcagagggaaccccgctc
agcctgaaggtgtttgttgcggggaggaaccgcctggagaacgatggaacagccgccctc
gcccaagccttccagttgatcggcaccctggaggaagttcacatgccccagaatggcatc
aaccaccccggtgtgacggctctggcctcagccatgcagcacaacccagaacttcgaatc
ctcaacctcaatgacaacactttcacagagaagggagcgttcgccatggctcaggccttg
aaacatctccgcagcattcaggtgatcaactttggagactgcttggttcgaccagcaggc
gctaaagccatcgcagaagccgtagctgaagggctgcccgccctgaaggagctcaatctg
tcctttggtgaaatcacagaggaagcggctctggctgtggctcacgccgttagagacaaa
gagcagctgcagaagctggatctgaatgggaattccctgggggaggacggctgtaaagcc
ctgaaagatgcaatggaaggcatggatatgggaaatcttctcggctcactcagtgatgat
gaaggtgagccagaagatgatgacgacgacgatgatgatgatgatgacgacgatgaagat
gaagaggaagaaatagatgaggaggagctagaggaggaagaggaagaagaggaggaagag
gaaagccaagcaaataaggtttccactcccgtgtcagcgccccgacctccagacgtgtcc
tccttcctcactttcccctcccctgacaagctgcttaaactgggcgccaagagagctttg
ctggtccagcagcaggtggacacaacagacaccacaaaaactgccgaagctttccttaag
atcgcatccgtgtacaaagaggagaataatgatgtgaagaatgcagttttggacacaatc
gatgctcttctaagtaaagctttcaacaccacctccttccaaggctgcagctttgtttca
gctttgctggttctgctcggcctcatcaagagtgaggacaaagtgaagcctgtgctggtg
gttcccggtcacctccacgccatagagcatgcagtccgccaggactattttcccaaagag
agcgtggccgtcctgaaggccttcatgtcccggagcagtaagaccttggagtcgtgtgga
aatgctaaaaacctgctccagtcgacgcttcagagaattggatctcagagctga
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