KEGG   Oryzias melastigma (Indian medaka): 112147330
Entry
112147330         CDS       T07439                                 
Symbol
copb2
Name
(RefSeq) coatomer subunit beta'
  KO
K17302  coatomer subunit beta'
Organism
oml  Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:oml00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:oml04131]
    112147330 (copb2)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oml04147]
    112147330 (copb2)
Membrane trafficking [BR:oml04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    112147330 (copb2)
Exosome [BR:oml04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   112147330 (copb2)
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR75_1st EIF3I Beta-prop_TEP1_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st NBCH_WD40 ANAPC4_WD40 Beta-prop_HPS5 Beta-prop_IFT122_1st PEP5_VPS11_N Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_LRRK2 Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_WDR35_TULP_N HEAT_GCN1
Other DBs
NCBI-GeneID: 112147330
NCBI-ProteinID: XP_024129407
Ensembl: ENSOMEG00000018165
LinkDB
Position
LG17:complement(19042801..19049832)
AA seq 928 aa
MPLRLDIKRRLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RASKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWEKKWTCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRQVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVCGLRGSNNVALGYDEGSIIIKVG
REEPAMSMDTNGKIIWAKHSEVQQANLKAMGDAEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAHDSSEYAIRESNSVVKIFKNFKE
KKSFKPDFGAEGIYGGFLLGVRSVNGLAFYDWENTELIRRIEIQPKHIFWSDSGELVCIA
TEESFFILRYMADKVAASQENNEGVTEDGIEDAFEVQGEIQEIVKTGLWVGDCFIYTSSV
NRLNYFVGGEIVTIAHLDRTMYLLGYIPKDDRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFGMADKVLPTIPKEQRTRVAHFLEKQGFKQQALAVSTDPEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFSLAQECLHHAQDYGGLLLLATASGNASMVGKLAEGAE
RDGKNNVAFMTYFLQGKLDQCLELLIRTNRLPEAAFLARTYLPSQVSRVVKLWRESLSKV
NQKAAESLADPTEYENLFPGLKEAFAAEHYLRETCVGGSRPAKDYPLVTPNEDRNILEEA
QGYEPKGTFIPFVSETKDSEESSSVAPVTPSQPEPPAPKAPEKEPEEDVLDFEQKEKTLD
ELEVDLDNMELDDIDTTDVNLDDDFLED
NT seq 2787 nt   +upstreamnt  +downstreamnt
atgcctctgaggctggacattaagcggcggcttactgccagatcagaccgtgtgaagagt
gtggatcttcatccaactgagccatggatgctagccagtctgtacaacggcagcgtctgt
gtttggaatcacgaaacgcagactcttgtcaagactttcgaagtatgtgacctccctgtc
agagcgtctaaatttgttgcacggaagaactgggtgatcacaggagcggatgacatgcag
attcgtgtgttcaactacaacaccttagagcgggtccacatgtttgaggcccactctgac
tacatccgctgcattgctgttcatccaacccagccatacattctcaccagcagtgatgac
atgctgatcaagctgtgggactgggagaagaagtggacatgcagtcaggtgtttgagggt
cacactcattatgtcatgcagattgtcatcaaccccaaggacaacaatcagtttgctagc
gcctcgcttgacaggacaataaaggtttggcagctgggctcttcgtcccctaatttcacc
ttggaaggtcacgagaaaggagtaaactgcattgattactacagcggaggagacaagcct
tacctgatctcaggggctgatgatcggcaggtcaagatctgggactaccagaataagacc
tgtgttcagactttagaggggcatgcccagaatgtctcttgtgtcagcttccaccctgaa
ctgcccattatcattaccggatcagaggatggcacggtgcggatctggcactcgagcact
taccgcctggaaagcactttgaactatggcatggagcgagtgtggtgtgtttgtggcctc
aggggctccaacaatgtggccctggggtatgatgaaggcagcatcattatcaaggtgggc
agagaggagcctgccatgtctatggacacaaatggcaaaatcatctgggctaaacacagt
gaagtacaacaggccaatctgaaggcaatgggggatgctgaaatcaaggatggtgagaga
ctacctctggctgttaaagacatgggcagctgtgagatttacccccaaaccatccagcat
aacccaaatggaaggtttgttgtggtgtgtggagatggagagtacatcatctataccgct
atggctttgaggaacaagagctttggctccgctcaggagtttgtttgggcacacgactct
tcagaatacgctatcagagaaagcaacagtgtggtcaaaatcttcaaaaatttcaaagag
aagaaatcttttaagcctgattttggagcagaagggatttacggaggttttctgcttggg
gtgaggtcagtgaatggtctggcgttttatgactgggaaaacacggagctcattcggcgc
atcgagattcagcccaaacatatcttctggtcggactctggtgaattggtctgcattgct
acagaagagtctttcttcattctacgctacatggcagataaagttgctgcttcccaggag
aacaatgaaggagtgacagaagatgggattgaagatgcctttgaggtccaaggagagatc
caggaaattgtaaagactgggctttgggttggagactgcttcatctacaccagctctgta
aacagactcaactactttgtaggaggagagattgtgactattgctcacctggacagaacc
atgtacctgctgggttacatcccaaaagatgaccgcctgtacctgggagacaaagagctc
aacattgtcagttactcactgctggtctccgttctggagtaccagactgctgtaatgaga
agagactttggaatggcagacaaggtgttgccaactatccctaaagaacaaaggaccaga
gtcgcacatttcctggagaaacagggtttcaaacagcaggcgctggctgtgtccactgac
ccagagcacaggtttgagttggccttgcaactgggagagttgaagatcgcctaccagctg
gctgtggaagcagagtctgagcagaagtggaaacagctggcagaactggcgatcagtaaa
tgccagttcagtctggctcaggagtgcctgcatcacgctcaggactatggtggcctgctt
ctcctcgccacagcctctggtaatgccagcatggtggggaagctggctgaaggagcagag
agggatggcaagaacaatgtggcctttatgacatacttccttcaggggaaacttgatcaa
tgcctggagcttctgatcaggacaaacagactaccagaggcggcctttttggctcgcacc
tacctgcccagccaggtgtcccgtgtggtcaaactgtggagggagagtttatccaaagtc
aaccagaaggcagctgaatccctcgcagaccccaccgaatatgaaaacctgttcccaggc
ctgaaggaagcctttgcagcagaacattatctgagagagacctgcgtgggcggctccaga
cctgctaaagactatcctcttgtcacacccaatgaagacaggaatatcctggaagaggct
caaggatatgagcccaaaggcactttcattccctttgtatctgagacaaaggacagcgaa
gaatccagctccgtcgctcctgtcaccccttcacagcctgaacctccagctcctaaagca
cctgaaaaagagccagaggaagatgttcttgattttgaacagaaagagaagactctggat
gagctagaagtggatctggacaacatggaattggacgacattgacaccacagatgtgaac
ctcgatgacgatttcttggaagattga

DBGET integrated database retrieval system