Oryzias melastigma (Indian medaka): 112147394
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Entry
112147394 CDS
T07439
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112147394 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oml01009
]
112147394 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112147394 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
oml03029
]
112147394 (rb1cc1)
Protein phosphatases and associated proteins [BR:
oml01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112147394 (rb1cc1)
Membrane trafficking [BR:
oml04131
]
Autophagy
Autophagosome formation proteins
ULK complex
112147394 (rb1cc1)
Mitochondrial biogenesis [BR:
oml03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
112147394 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
HAUS1
Motif
Other DBs
NCBI-GeneID:
112147394
NCBI-ProteinID:
XP_024129511
Ensembl:
ENSOMEG00000006857
LinkDB
All DBs
Position
LG17:5919969..5943555
Genome browser
AA seq
1627 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTDLAVQTVHQLKHAIQAKYKIAIQHQVLVVNGGECMAVDRRVC
SYSAGTETNPIFLFNKEMILSDRDPTIPKTTFSIESEIQVKVEESLLMPAVFHTVASRTQ
LALEMFEVANKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQRLLTKFNTSYTNYQH
DLEEIKVKLSKLGTAVSVMARIPLLECLTRHSYKESMEKSSSSPGRDSDETEEEKSTDSV
LCTARARMPHKSPSTLSASGLAAEEPRGDQATNEMADSGELKAALLDDSTPELTNQPLFN
VTLLDWINVQDRPNDVEAVVRKCFDSINRLDPRIIQPFLGDCCETIAKLDNQNMKAIKGL
EDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHTNQLMIMLN
NHRKLLDIKKKCTTAKQELANNLQVRLKWCCYVMLHADQDAEKLQALLRLLTELMERVRV
VEALSTVPQMYCLAVVEVVRRKMFMRHYRAWANALVKDGKRLYEAEKFKRESFGKLFRKS
FLRNRLFRGLDSWPPTSFCTRKPRKFDDELPDISLDDLQYLKSCCPDEVQPFLMVPAMCD
FEPLNRHVEKLHQLVQAAQSVDEMSQTITDLLSEQRASYSQTSQRSTALTPQSEKTPTSP
KTPPPPLSLQGPICQPLPVPAPLEDLSPDSIDAQTFDFETIGHPNMDPVLQQGSLDLDSL
AESPESDFMSAVNEFVIEENLASPNPISEPISPEMMVESLYSSVINAIDNKRMQDTTTLQ
RESSKISELTQVLEKYQSAAEESVSKFRSVKDDLRHLKSLVLKERNDFTLALHSLAAEVS
GAVGGVYQNHEMQLKEQHLGELLNLRQELEQQIHNLTEENQLNQNIVRDVQRAMLELEGL
LERKEKELTQLENEKERWGEKEGGLNERIGNLEQTMSEQTEEIRMLSALRDSLSGQLENL
HFEIERSQQKIRQEMEAASQSHLKELEDRLKQEHRTELETISKDNREALEHLTAENNAKS
TTSASHHAAAIQEKDAKIKDLEARLTELAEMRCKLEVELALKESESEEVKNHLEESKTQQ
SETVKTQVEAETKTIREELAGLRKQLQAKNEEYEVDLAELRALMRIEKDHCISELVDRHD
EETALLHGNLSSLKQQFQEAQRSHGEQQQNLTERFSQQIAALTQEKEEQVRSFRALEQEL
RTLIGGLQSENDRLSKESKKEEAAAAEGFRELEQQKEETEKRLLDKIRQLETELSEKKKF
SKSDEGLSLHAESRADSGGPLSLDSALQERLQQERASLQMQMELLEKKKNEEMQNLKTSL
IAEQQTNFNTVLTREKMKKEQIIGDLTEKLRQVTQQQEKDKALIETLSEDRASVMQEKKH
LEEELNRLRSTVLASSSMFTSTPPVQEPAEGGAVAAAAARVLPVAESLADTERLTSVAAM
ADNEHVDSAVEASMVTVQDSIMSEEKQRIILLERTLHMKEEENKRLSQRLMSQSMSSVSS
RHSDKIAIRDFQVGDLVLIILDERHDNYVLFTVGPTLYFLHSESLTALDLKPGPNHTPPA
ILMYRLKYSTNKSIFCSKASGTSRRPWVLGKVLEKEYCQAKKAQNRFKVPLGTKFYRVKA
VPWNRKV
NT seq
4884 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaagtcaacaacggcagcacgttgacatttgacactgacctt
gctgtccaaactgtacatcagctgaaacatgccatccaagccaaatataaaatcgcaatt
cagcatcaagtccttgttgtcaacggaggggaatgcatggctgtggaccgacgagtctgc
agctacagtgctggcactgaaaccaatcccatattcctgttcaacaaagagatgatcctg
tctgatcgggacccaacaatccccaaaaccaccttctccatcgagagtgagattcaggtc
aaagtggaggagtcactactgatgccagctgtctttcacactgttgcctcgagaacacaa
cttgccctggaaatgtttgaagttgccaacaagctttgctcgttctgtgaacgtttggtt
cacgatgaacatctccaacatcaaggctgggctgctatcatggcgaacctggacgattgc
actctgtcgtatcagaggttactcaccaaattcaacacctcctacacgaattatcaacac
gatctggaggaaatcaaagtgaaactttcaaagttggggacagccgtctcggtgatggcc
aggataccgctgctggaatgtttgactcgacacagttacaaagagagcatggagaagtcc
agttcaagccccggcagggattcagacgaaacggaagaagagaagtccaccgactcggtc
ctctgcaccgctcgagcccgcatgccccacaagtccccgtctaccctgtccgcctccgga
ttggctgcagaagagccgcgtggagaccaggcgacaaacgaaatggccgacagcggcgag
ctgaaagcggcgctgctagatgacagcactcctgagctcaccaaccagcctttgttcaac
gtcacactactggactggattaatgtccaagatcggcccaatgacgtggaagcagtggtg
aggaaatgcttcgactccatcaacaggctggacccgcgcatcattcaacccttcctggga
gattgctgtgaaactattgcgaagttggataatcaaaacatgaaagccatcaaggggctt
gaagaccgattgtacgctctagatcagatgatcgccagctgcaagaagctggtgaatgaa
cagaaggaacttgctcagggatttttggcaaatcagaaacgagccgaaaacctgaaggac
acgtccgttctgcctgacttgtgtctgagtcacaccaaccagctgatgatcatgctgaac
aaccacaggaagctgctggacattaagaagaagtgcaccaccgccaagcaagaactggca
aacaaccttcaagtcagactcaaatggtgctgctatgtgatgcttcacgccgaccaggat
gcagaaaagctccaggcgctgctgaggctgctgacggagctgatggagagagtgagggtg
gtggaggccctcagcaccgtgcctcagatgtactgcctggccgtggtggaagtcgtcagg
aggaaaatgtttatgcgccactacagagcgtgggccaacgctctggtgaaggacgggaaa
cgtctgtacgaggcagaaaagttcaaaagggaatccttcgggaaactcttcaggaagtct
ttccttcgaaatcgtctgtttcgggggctcgactcgtggcctccaacatctttctgtact
cgaaagcccagaaagttcgatgatgaacttccagacatttcacttgatgacctgcagtac
ttgaagtcgtgttgtcctgacgaggtgcagcctttcctaatggtgcccgccatgtgtgat
tttgagcccttaaatcgccacgtagagaaacttcatcagctcgtccaggccgcccagagt
gtcgacgagatgtcccaaactattactgacctgctaagtgaacaaagggcgtcctacagt
cagacctcccagagatcaactgctttgactccgcagtctgaaaaaacgccaacatctccc
aaaaccccgcctcctcctctaagccttcagggacccatctgccagcccctccccgtcccc
gcccccttggaggacttatcccccgacagcatcgacgcgcagacgttcgacttcgaaacc
atcgggcaccccaacatggacccggtcctgcagcaggggtcgctcgacttggactcgcta
gcggagagccccgagtcggatttcatgtcagccgtcaacgagtttgtgatcgaagagaac
ctggcctccccaaaccccatcagcgagccgatcagcccagagatgatggtggagtctctg
tactcctccgtcattaacgctatagacaacaagcggatgcaggacaccaccacactacag
agagagagctccaagatctctgagctcacgcaggttctggagaagtaccagagtgctgca
gaggagtcagtctccaaattcagaagcgtgaaggacgatctgcggcacttaaagagtctc
gtgttgaaggaacgcaacgactttacgctagctttgcatagcttagccgcagaagtgagc
ggcgctgtgggcggggtctaccagaaccacgagatgcagctgaaggagcagcacctgggg
gagctcctgaacctccggcaggagctggagcagcagatccacaacctgacggaggaaaac
cagctcaaccagaacatcgtgcgggacgtccagcgcgccatgctggagctggaggggctc
ctggagcgcaaggagaaggagctgacgcagctggagaacgagaaggagcgatggggggag
aaggagggcggtctgaacgagcggatcggaaacctggagcagactatgagcgagcagacc
gaggagatccggatgctgtcggctttgagggactctctgagcggccagctggagaacctg
cactttgagatcgaacgcagtcagcagaagatccgacaggagatggaggccgccagtcag
tcccatctgaaggagctggaggacagattgaagcaggagcacaggacggagctggagacc
atcagtaaggataacagggaggctctggaacatctcaccgctgaaaataacgcaaagtcg
acgacttcggccagtcaccacgccgctgctatccaggagaaggacgcaaagatcaaggat
ttggaagctcggttgactgaactcgcagaaatgcgctgcaagttggaggtggagctcgcc
ttaaaggagtccgaatcagaggaggtgaagaaccaccttgaggagagcaagacgcagcag
tccgagaccgtgaagacccaagtcgaagccgagaccaaaaccatcagagaggagttggca
ggactccggaagcagcttcaggctaaaaacgaggagtacgaagtggacctggccgagctg
agagccctcatgagaatcgagaaggaccactgcatctccgagctggtggacagacacgac
gaggagacggctctgctgcacggaaacctctcctccctgaagcaacagttccaggaggcc
caaaggagccacggcgagcagcagcagaacctcacagagcggttcagtcagcagatcgcc
gcgctgacccaggagaaggaggagcaggtcaggagtttccgagcgctggagcaggagttg
aggactctcatcgggggtttacagtcagaaaacgaccgtctttccaaagagtcaaagaaa
gaggaggcggcagcagcagagggcttcagagagctggagcagcagaaagaggagacggag
aaaagactgttggacaaaatcagacagctggagacagagctctcagaaaagaagaagttc
tcaaaaagcgatgaaggtttgtctctgcacgccgagagccgggcggattctggaggaccg
ctgtcgctggactccgccctacaagagcggctgcagcaggagagggcgtcgctgcagatg
cagatggaacttctggagaagaagaagaacgaagagatgcagaacctcaagacatcgctg
atcgcagagcagcagacaaacttcaacactgtgctaacccgagaaaagatgaagaaggag
cagatcatcggagacctcacagagaagctgcgtcaagttacccagcagcaggagaaggac
aaagctctgatagagacgttatccgaggaccgagccagcgtgatgcaggagaagaaacac
ttggaggaggagcttaaccgcctgcgcagcacagtcctggcctcctccagcatgttcacc
tccacccccccggtgcaggagcccgcagagggcggggcggtggcggcggcggcggctcga
gttctgcctgtcgctgagtctctggctgacacggaaagactgacctctgttgccgccatg
gcggacaacgagcacgtggattcggccgtggaggccagcatggtgaccgtccaggacagc
atcatgtcggaggagaagcagcgcatcatcttacttgagaggactttacatatgaaggaa
gaagaaaacaagcgcctcagtcagagactcatgtctcagagcatgtcgtccgtgtcgtct
cgacattcagacaaaatcgccatcagagacttccaggtcggcgatttggttctcatcatt
ctggatgaaaggcacgacaactacgtgctcttcaccgtcggccccaccctctacttcctc
cactccgagtccctcacggctctggacctcaaaccaggtccgaaccacacaccgcctgcc
attttaatgtatcgattgaaatattcaaccaataaatcaatattctgctccaaagcttca
gggacttccaggcggccgtgggttcttggaaaagttctggagaaggaatattgccaagca
aaaaaggcccagaacagatttaaggttcctctcggaaccaagttttaccgagtgaaagct
gttccgtggaacagaaaagtataa
DBGET
integrated database retrieval system
