Oryzias melastigma (Indian medaka): 112148008
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Entry
112148008 CDS
T07439
Symbol
clip1a
Name
(RefSeq) CAP-Gly domain-containing linker protein 1 isoform X1
KO
K10421
CAP-Gly domain-containing linker protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
112148008 (clip1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oml03036
]
112148008 (clip1a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
oml04812
]
112148008 (clip1a)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
112148008 (clip1a)
Cytoskeleton proteins [BR:
oml04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
112148008 (clip1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAP_GLY
CLIP1_ZNF
Crescentin
Motif
Other DBs
NCBI-GeneID:
112148008
NCBI-ProteinID:
XP_024130530
LinkDB
All DBs
Position
LG9:complement(17975015..18000448)
Genome browser
AA seq
2223 aa
AA seq
DB search
MSSSKPSGIKAPSKIARAPGPGATKTTASTTKAAVAEKSAGGEDKNNAEESFQVGERVWV
NGNKPGYVQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEALRGIFTRPSKLSR
TEGEANGTQTAPPSRAASPTPSVGSVASHTPATKSATSSSALAAKKAAPAQPATNLTGTN
SESVSNLSETGSVKKGEREMKMGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGK
NDGAVAGTRYFQCQPKYGLFAPVHKVTRIGFPSTTPAKAKTTVRKVVATPSGLKRSPSAS
SISTMSSVASSVSAKPSRTGLLTETSSRYNRKISGTTALQEALKEKQQHIEQLMAERDME
RAEVAKATSHVGEMEQEISLLREEQEQMEAKMDQLRAMVEAADKEKVDLLNQLEEEHRKV
EDLQFRVEEACITKGDLETQTRLEHAHIKELEQSLLFEKTKAEKLQRELEDTRVATVSER
SRIMELERDLSLRTREVADLQLRVGIQQSSDDSKPDLSPLLEEIKSLRDQLASQEAKWKE
DVVKHKEKIEGQEKLHAEALAQLQAATMRLSSDKEQLEMRLSQAEKENADSVELWRSKLD
SAVASHQQAMEELKVSLSKGSDAQTEELLETKSALEKLKKEHVSALDEAAAKHQAATSAW
TQEMEQLKTQLFSLTEDKERLEETLRSSIEKVEEQHLVEMEDVLGKLHAAEIRVKELEEK
DAILAQQTQDQDRETKEQKAEMMALRSQLEKSNQELEALKSRLEDVQNQGNNQANKVGEI
SSQLEEKQQEVLTLQQSLLTTKQKNETLEQEFEALKQKLTDSTDEKTKSAQILQEKLEIL
HQKENECTSLTTELESHKSQLAGMERKLKAGDEKLEQLLKDKNKLENDISEMMKASGDSS
VQLTKMNEDLMQKERRLEELQNLLAEEKEKVAQANEMLKQEQSNKEQQMKETRDAHLDEI
SSLQENITVLEENVAQKDALVEELKASQEKSLSQASALHAKELEKLQTQVDKLNQELSSS
KEKTEQLEKTVSELQPYKEKSQCLSAELDSCKHDVEHLSEKVENQALDLERKGKEFQEIQ
TKKDHLEKQLLEMQNKLCAHESSYKELLAQNENLLTTRDELSKQHEELLTIKKSSSEEII
SKNQELEELKLLLQKTQTENKELQKSKTEQLAQIDKLEAKDAEKNDLILKLQQDSKQIEA
KNKQLHEDYKNVSKEKKNLEEAFGENKSNLTKEIENLVCERDSIRETLKSVDAKNTEMQE
KLKALNLEKEDLTMKNTRLQTSSETLTKEKDEMTSQIKAFGLDMGNLNKEKEELQNKLSL
TKKDLESSMRECKELRASKNGLAQMLDELKMSSQVTDSEKIQLLQEKENLLTFQRKVSNE
KEELLREIQELKDKLEVMTHQLSDSNEKLKEVVSSSEQEKQAFILQNSETELVLHDLRKE
KMSLESALEQQKMSHERLAVEKKELEEKQAKDLHEKNALSLERNNLANDIQTVREQLDGV
NRINADLVQDKSRLALVMEDIKSRRDELETETDALKQERADLQTELQKHLSEAESLQKGI
TELAEKHTKLKDDLEKSALQVDNLKKDNLHLQSLQTEADRKLQSLQAENQALLSEVQESK
KQLHSVSDAKQFLENQLQAESGERKDAVSFKETLSKEIEELQKTLTKVTEERETVSSNLK
NADEQKRSLMVDMEGLKTQLKQQQQDEEQVIKEKELLLSKLEEMDKQITFLTKVKEDLSA
GDNTSKQEILTLQTAQESWLSERSRLLEEVKSLKESVDQLEADNKVQQQERESLEKRCKE
ALSEASVSAAVKEEMSSSISCLRAQQDAIQLERDEAAQQVRELESQLKNALSKQLEATEA
SGKATEALEKLAKEKAALMKDKSEAQTLLEELQTSKQEMQTRLEMIIKENSKYKEDLNLS
KEQLCTETEKTKSLSQKIEELQEAVSVKSESMQTLLVENKKLSQELNSNHSEQKDLFKMK
EEHSKLTKEVEELKQSESTLKDQLNREKAAVQQSIFEKSALIQEKDQHVEKLKKEMEVLR
GESASVKTLHGTIQSLERDKANLKEQIQKLEKTITAGPNNGTKDLGDDVLDQMKEEKEIA
QSQAAIEFLNSVIVDLQRKNEELKDKLETMAAAALNGNNPNELDNHDGHEKQPEKKKAPP
RLFCDICDCFDLHDTEDCPTQMQMPDTPPHTTYHGNKHEERPYCDICEVFGHWTESCTDD
QTF
NT seq
6672 nt
NT seq
+upstream
nt +downstream
nt
atgagctcatcgaagcccagtgggatcaaagcacccagcaagatagctagggcgcctgga
cctggagctactaagaccactgcaagcacaactaaagctgctgttgcagagaaatccgct
ggtggagaagataaaaataatgcagaggaaagcttccaggtcggggagcgagtctgggtg
aatggaaataagcctggttacgtacagtttctcggagagacacagtttgccccgggacag
tgggcaggaatcgtcctcgatgagcccattggaaaaaacgatggatccgtggcaggagtc
cgctacttccagtgtgaagccctcagaggaatatttacccgaccttccaagctgtcccgc
acagagggggaggctaatggaacacagaccgcaccgccctcccgagctgcatcacccact
ccttcagttggaagtgtagcctcacatacacctgccactaaatctgcaacatcatcaagt
gctcttgcagctaagaaggccgctcctgctcagccagcaaccaacctcacgggaacaaac
agtgaatctgtctccaacctctccgagaccgggtcggtcaagaagggggaaagggaaatg
aagatgggggaccgtgtgctggttggtggtacaaaagcaggagtggtacgtttccttgga
gaaacagattttgctaaaggcgagtggtgtggtgttgaacttgatgaacctctcggaaag
aatgacggagcagtggcaggcacaaggtactttcagtgccaacccaagtacggtttattc
gctccggttcacaaagttacacgcatcggctttccctccacaacaccagccaaagcaaaa
acaaccgtgaggaaagtggtggcaacaccgtcaggactgaagagaagcccgagtgcctca
tctatcagcaccatgagttcagtggcatcatctgtcagtgctaagcccagtcgaacaggc
ctgctaacggaaacttcatcaaggtataatcggaagatttccggcaccacagccctgcag
gaggccttaaaagagaagcaacaacatattgagcagctcatggctgaaagggacatggaa
agagctgaggtcgccaaggccacaagccatgttggagaaatggagcaagaaatctctttg
cttagagaggaacaagagcagatggaggcaaaaatggatcagctgcgtgccatggttgaa
gctgcagataaagagaaagtggatctgctcaatcagctggaggaggagcataggaaggtg
gaagaccttcagtttcgtgttgaagaagcttgcattacgaagggagatcttgagacgcag
accagactggagcatgcccacattaaggagcttgaacagagccttctctttgaaaagacc
aaagctgagaaactccaaagagagttagaagacactagggttgctactgtgtcagaaaga
tctcgtataatggagcttgaaagggacctgtctttacgaaccagagaggtagctgacctg
cagctgcgtgttgggatccagcagagctccgatgactctaagccggatctctctcctttg
ctggaggagataaagtcactcagagatcagctggcatcccaagaagctaaatggaaagaa
gatgttgtgaaacacaaagaaaagattgaaggtcaagagaaactgcatgccgaggctctt
gcccagcttcaagctgcaactatgaggctatctagtgacaaagagcagctggagatgcgt
ctaagccaggctgaaaaagaaaatgctgactctgttgagctttggcgttccaagttggat
tctgctgtagcttctcatcaacaagccatggaggaattgaaagtgtctttaagcaaaggg
tcagatgcccagacagaagagctgctggaaaccaaaagtgcattagagaagctcaagaag
gagcacgtgtcagctcttgatgaggcagccgccaaacatcaagctgctacctcagcctgg
actcaggagatggagcaactgaagacacagcttttttcgttaaccgaagacaaggagcgg
ctggaggagacgctgcgatctagtatcgaaaaagtagaagagcagcacctcgtggagatg
gaagatgttcttggaaagcttcatgctgctgaaattagggtcaaagaacttgaagagaaa
gatgcaatactcgcacaacagactcaagaccaggacagagaaaccaaagagcaaaaggca
gaaatgatggctctgcggagtcaactggagaaatctaaccaggagcttgaagctctgaag
agcaggttagaagatgtacaaaatcaaggaaacaaccaggctaacaaggttggtgaaata
agctctcagctggaagaaaaacagcaggaagtcctcactttacagcagagtctcctcaca
acaaagcagaagaatgaaactttggaacaagagtttgaagccctgaagcagaagttgact
gacagcacagatgagaagactaaatctgctcaaattctacaagaaaaacttgaaattctt
catcagaaggagaatgagtgcacatcattaaccacagaactggagtctcacaaaagccaa
cttgctggtatggaaaggaagttgaaggctggagatgaaaagcttgagcaacttcttaag
gacaaaaataagctggaaaacgacatttcagaaatgatgaaggcatctggtgacagctct
gtacaactgacaaaaatgaatgaagacctcatgcagaaagaaaggagattggaggaattg
cagaatctgcttgcagaagagaaagagaaagttgcacaagcaaatgaaatgctcaagcaa
gaacaatcaaataaagagcagcagatgaaagaaaccagagatgcacatcttgatgaaata
agtagtcttcaggaaaatatcacagtcttggaggaaaatgtggcgcagaaggacgcttta
gtggaggagctgaaggcttcccaggagaaatccctgagtcaggcatcagcgcttcacgca
aaagagcttgagaagcttcagactcaggttgacaaattaaaccaggagctttcttcctcc
aaggagaaaacagaacagttagagaaaactgtgtctgaactgcagccttacaaagagaag
agtcagtgtctttctgctgagcttgattcctgcaagcatgatgttgaacatttgtcagaa
aaagtggaaaaccaggcattagatctggagagaaaaggaaaggagtttcaggaaattcaa
acgaaaaaagatcacctggaaaaacagcttttagaaatgcagaataagctttgtgctcat
gagagtagttacaaggagcttttagcgcagaatgaaaatctgttaacaaccagagatgaa
ctttccaaacagcacgaggagctactcaccataaagaagagctcaagtgaagagattatt
tcaaaaaatcaggaacttgaggagctcaaactcctcctccaaaaaacacagactgaaaac
aaagaacttcagaaaagtaaaactgaacaattggcccaaattgacaaacttgaagcgaaa
gatgcagaaaaaaatgacttgattttaaaacttcaacaggacagcaagcaaatagaagct
aaaaataagcaactgcatgaggactataaaaatgtcagcaaagagaagaaaaatcttgaa
gaggcctttggtgaaaacaaatctaatctcactaaagaaatagaaaatttagtgtgtgag
agagactccattagagaaactctgaaatctgttgatgccaaaaacacagagatgcaggaa
aagctcaaagctttaaacttggaaaaagaagatctgacaatgaagaacactcggctccag
acatcctcagaaacactaacaaaagaaaaagatgagatgacttctcaaataaaagctttt
gggctggacatgggcaatcttaataaggagaaagaggagcttcagaataaactcagtctc
acaaagaaagacctggagagctccatgcgtgaatgtaaagaactcagagcttccaaaaat
ggccttgcccagatgctggatgagctcaagatgagcagtcaagtcacagactctgaaaaa
atccaacttctgcaggagaaggaaaatctactcacattccaaagaaaggtatctaatgag
aaagaggagctcctaagagaaatccaggaattaaaagacaagcttgaggtgatgacacat
cagttgtctgattctaatgagaagcttaaagaagtggtatcatcttcggagcaagagaag
caagctttcatcctccagaattctgaaactgagttggttctgcatgatctgagaaaagag
aagatgagcctggagtcggctctggagcagcagaaaatgagtcatgagcgtttggctgtg
gagaagaaggagttggaggagaagcaggcaaaggatctccatgagaaaaacgctctttct
cttgaacgcaataatctggctaatgacatccaaacagtcagggagcaactagacggggtc
aacagaatcaatgccgaccttgttcaggacaagtctcgtttggctctagtaatggaggac
atcaaaagccgaagagatgagctagaaacggagacggacgctttgaaacaggaaagggct
gacctacaaactgaactgcagaagcatttgtctgaagctgaaagtctccaaaagggcatt
actgaacttgcagaaaagcatactaagctaaaagatgacctagagaaatccgctctacag
gtagacaaccttaaaaaagacaacctgcaccttcagtcgctgcagacagaagctgacaga
aaactgcagtcattgcaggcagagaaccaggctctgcttagtgaggtccaggagtccaaa
aagcagcttcattcagtgtccgatgccaaacagtttcttgaaaaccaacttcaggctgaa
tccggtgagcggaaggatgcagtgtctttcaaagagaccctttccaaagaaattgaagag
ctgcagaaaactttgactaaagtcacagaggaaagggaaacagtctcatctaaccttaag
aatgcagatgaacagaagaggtctcttatggtggatatggagggtttgaaaacacaactg
aagcagcaacaacaagacgaagagcaggtgataaaagagaaagaactgctcttatctaag
cttgaagagatggacaagcagataactttcctgactaaggtgaaggaggacctctcagcc
ggagacaacacctccaagcaggagattttgactcttcagacagctcaagagagttggctc
tcagagcgatctaggttgttggaagaagtaaagagtttgaaggagagtgtggaccaacta
gaagctgataataaggttcaacaacaggagagggaaagcctggaaaaacggtgcaaagag
gctctctcagaagcatctgtttcagctgctgtgaaagaagagatgtcctccagcatctcc
tgtctcagagctcagcaggatgccatacaactggaaagggatgaagccgcccagcaagtc
agagagcttgagtcgcagctaaaaaatgccctttctaaacagcttgaggcaacagaggcc
tctggtaaggctactgaggccctggaaaagctggctaaagagaaagccgctttgatgaag
gacaagagtgaagcccagactttactggaggagctccagacctccaagcaggaaatgcag
actcggctggaaatgattattaaagagaattccaaatataaagaagatctgaacttatcc
aaagagcaactttgcaccgaaacagaaaaaaccaagagtctatcccagaaaattgaagag
ctccaagaagcagtttcagtcaaatcagagtccatgcaaacactgcttgttgaaaacaaa
aagctcagtcaagagctgaacagcaatcacagtgagcagaaggatctttttaagatgaaa
gaagagcactcaaaactcacaaaagaggtggaagagttgaaacaaagcgaaagcactttg
aaggatcagctgaacagggagaaagctgctgtccaacagtcaatctttgaaaaaagtgcc
ttaattcaggaaaaggaccaacatgtggaaaaactgaaaaaagagatggaagtattacgt
ggagaaagtgcctctgttaagacgttgcacggtacaattcagtccttggagcgggacaaa
gctaatctaaaggagcaaatccagaaactggagaaaaccattactgctgggcctaacaat
ggcaccaaagacttgggtgatgatgttttggaccaaatgaaagaggagaaggagatcgca
caaagtcaggcagcgatcgagttcctgaattcggtcattgtagacctccagaggaaaaat
gaagagcttaaagacaaactggaaacaatggcagctgctgccctcaatgggaacaatcca
aacgaattagataaccatgatggccacgaaaagcagccagagaagaagaaagccccgcca
aggctgttctgtgatatctgcgactgcttcgacctccacgacaccgaggactgtcccacc
caaatgcagatgcctgacacccccccacacacgacctaccacggcaacaagcacgaagag
cggccgtactgcgacatctgcgaggtctttggccactggacagagtcctgcactgacgac
cagaccttttaa
DBGET
integrated database retrieval system
