Oryzias melastigma (Indian medaka): 112148011
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Entry
112148011 CDS
T07439
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112148011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oml03009
]
112148011
Ribosome biogenesis [BR:
oml03009
]
Eukaryotic type
Pre-60S particles
RNases
112148011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Val_tRNA-synt_C
KIX_2
Med15_N
Motif
Other DBs
NCBI-GeneID:
112148011
NCBI-ProteinID:
XP_024130544
Ensembl:
ENSOMEG00000008840
LinkDB
All DBs
Position
LG9:complement(4420886..4431110)
Genome browser
AA seq
1023 aa
AA seq
DB search
MFPSSRLFAGITCPVTRRGRCERPHCFYGHAAAEDGSHATVVDLTGEDSDGPPAAGGAQV
TPEVSDQHLHELERLNKEIESVKQEVEQEQRRLSNYTAAGSGAPAHQNRGFYGLQSSADQ
KNPVQTRKYLVDNSRPRTDLEYDPLSNFSAALRSYSSSGKKSKKLECRSSKAEESAPQQV
QTCGFLEDAREDGVLVIDEVPEDPSARVQKHVGGKPPLCVQENVKMSTALHSSLRTPQET
GPSLICGAAALWSSDPNVQNRSQVAPEQPGGAEKPDLQQRQTPERSSAPPPPPQKPPPVG
PQENPPPTSTVSPSEDSRSRAEPSGDRTVIEINSSPEDEEDSSYLDVELSDSDPMEECYR
IFMEANDQQHLQEQEDDTEKLQTNAGLEASAGKKRVAHDAKNSEQPQAKSRPQPQVLVPL
REQTAPAFGPRASKIQQVQQRASMLTASVKAGRAFASAMSQRSQEETRAAAVWTPPPAHL
QPAPLQNTYMNYIPVGTAVIEVGNNLHLILPQRAFPLPVASTSTPLPSVLTPVAQVHPQT
NHPAAVIPVARSRSAAPAAVVVPPARRPALAAASLPSAAPQTTSKPSKRKLKQQSEASKE
KVPHNVRQRYVNMFTEEFLKSTHDVNEAFQKALSEEKSVFNRSANKLKYLSVAVNALKRL
KNQSAAASKSEKDVSSRRSKGNIPLSLMSCRGKADDSPIYNSLKDYVLSDERMIENNYPV
QHPEKPGCAVLFNEKKTNPDPLKRICCRCGSTYSVSQSGKHVRKEECNYHYGKGVENRVP
GGVETRYSCCQGVMGAPACQLFKLHVHDSLSMEGFVSTAGGTPSDAACPGVYSLDCEMCY
TVHGLELSRVTVIGSDLQVVYDAFVKPDSEVIDYNTRFSGISEKDVSGTSTSLKEVQQTL
LQFITADTILIGHGLETDLCLLKLLHGKVVDTAVVFPHRLGPPHKLSLNQLTAEHLRRII
QESGGFVGGAAGGRSPFLTSQFNKDIWSFRIIREAEQVKLRHCLPSLQFVATTLQKTQLP
AWS
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgtttccctcgtccaggctcttcgcggggatcacgtgtccagtcacgcggcgtggacgc
tgtgagcggcctcattgtttctacggtcacgcggctgcggaggatggaagtcacgcgacc
gtcgtggatttaacaggagaagattctgacggtcctcctgcggctggtggagctcaggtg
acccccgaggtttcggaccagcacctccacgagctggagaggctcaacaaggagatcgag
agcgtgaagcaggaggtggagcaggagcagcggcggctgtccaactacacggcggccggc
agcggcgcgccggcgcaccagaaccggggcttttatggccttcagtcttctgcggaccag
aagaaccccgtccaaactaggaagtacttggtggacaactccaggccgagaaccgatttg
gagtacgaccctttgtccaacttctctgctgccttacgctcatacagctcttctggaaag
aagagtaaaaaactcgagtgcagaagttccaaagctgaagaatcggctcctcaacaagtc
cagacttgtggatttctggaggacgccagagaagacggcgttctggttattgacgaggtg
cctgaagacccgagtgctcgggttcagaaacatgttggaggtaaacctccgctgtgcgtg
caggagaacgtgaagatgagcacggcgctccattcttctctcagaacccctcaggagacc
ggtccgagtctcatctgtggagctgcagctctttggtcctcagacccgaacgttcagaac
cggagccaggtggcacctgagcagcccggcggtgctgagaaaccggacctccagcagcgc
cagactcctgaacgaagctcagctcctcctcctccgcctcagaaacccccccctgtggga
ccccaggagaacccgcctcccacttccaccgtttcaccgtctgaagattctcggagcaga
gccgagccatctggagacagaaccgtcatcgagatcaactccagccctgaagatgaagaa
gacagcagctacctggacgtggagctgtcagacagcgaccccatggaggagtgctacagg
atcttcatggaggcaaacgaccagcagcatcttcaagagcaggaagacgacaccgagaag
ctgcagacaaacgctggacttgaggcgtctgcaggaaaaaagcgggtcgcccacgacgcc
aaaaactcagagcagccgcaggcgaagagcaggccgcagccgcaggtgctggttcctctc
agggagcagacggcgccggcgttcggcccgcgggcctcaaagatccagcaggtgcagcag
agggcctccatgctgacggcgtcggtgaaagcgggccgagcttttgcttctgccatgagt
cagaggagccaggaggagacgagggcggcggcggtgtggactccgcctccagcacacctg
cagcctgctcctctgcagaacacttatatgaactatattcccgtcgggacggcagtgatc
gaagtggggaacaacctgcacctgatcctccctcagagggcttttcctcttcctgttgcc
tccacctccaccccgcttccctccgttctcactccagtcgctcaggttcatccgcagacg
aaccatcccgctgctgtgatccccgtggcgaggagccgctcggcagcgcccgccgcggtc
gtggttcctccggcgcgccggcccgcgctcgccgctgcgtctctgccctctgcagctcct
cagacgacctcaaagccctctaagcgtaaactgaagcagcaaagcgaagcgtccaaagag
aaagtcccgcacaacgtccgccagcgctacgtcaacatgttcacggaggagttcctcaag
tccactcacgacgtgaacgaagcctttcagaaggccctgagcgaagagaagagcgtcttt
aaccgcagcgccaacaaactcaagtacctgagcgtcgccgtgaacgccctgaagaggctg
aagaaccagagcgccgccgcctccaagagtgagaaggacgtcagcagtcggagatctaaa
gggaacatcccgctcagcctcatgagctgcagaggaaaagcagacgactcgccgatctat
aatagtctgaaggattacgtcctgagcgatgaaaggatgatcgagaataactatcccgtc
cagcacccagagaaacccggatgtgcggttctgttcaacgagaagaaaacgaatccggat
cccctaaaacggatctgctgtcgatgcggatccacgtactccgtcagccaatcagggaaa
cacgtccgcaaggaggagtgcaactaccactacggcaaaggagtggagaacagagtccca
ggtggagtggagacgcgctacagctgctgtcagggagtcatgggagctccagcatgtcag
ctgtttaagctgcacgtccacgactccctgagcatggagggcttcgtgtccacggctgga
gggacgccctcggacgcagcgtgtccaggagtttactctctggactgtgagatgtgctac
accgtccacggcctggagctgtcgcgagtcaccgtgatcggctctgatctccaagtcgtc
tacgacgccttcgtcaaacccgacagcgaggtcatcgactacaacaccaggttttcaggc
atcagtgagaaggatgtgtctggaaccagcacctcactgaaggaggtccagcaaacgctg
ttgcagttcatcaccgcagacaccattctcatcggacacggcctggagacggacctctgt
ctgctgaagctgcttcacgggaaggtcgtggacacggcggtggtcttcccccaccgcctg
ggccccccccacaagctcagcctcaaccagctgacggccgaacacctgcggaggatcatc
caggaaagcggtgggtttgtgggcggagctgcaggaggaaggtcaccattcctcacgtct
cagtttaataaagacatttggtccttcagaatcattagagaagctgaacaggtgaaactc
agacactgtttgccgtctctccagtttgtggccacgacactgcagaagacgcagctgcct
gcatggagctga
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integrated database retrieval system
